RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 AFDNP55196 1824 aaKnown RBP12.02□□□□□ -0.48
TRIM39-202ENST00000376659 FSD2A1L4K1 749 aa12.02□□□□□ -0.49
TRIM39-202ENST00000376659 ANKRD45Q5TZF3 282 aa12.02□□□□□ -0.49
TRIM39-202ENST00000376659 C16orf71Q8IYS4 520 aaPredicted RBP12.02□□□□□ -0.49
TRIM39-202ENST00000376659 IBTKQ9P2D0 1353 aaPredicted RBP12.02□□□□□ -0.49
TRIM39-202ENST00000376659 CLEC17AQ6ZS10 378 aa12.02□□□□□ -0.49
TRIM39-202ENST00000376659 RPAP2Q8IXW5 612 aaPredicted RBP12.02□□□□□ -0.49
TRIM39-202ENST00000376659 MIS18AQ9NYP9 233 aa12.02□□□□□ -0.49
TRIM39-202ENST00000376659 GAS2L2Q8NHY3 880 aa12□□□□□ -0.49
TRIM39-202ENST00000376659 TOGARAM1Q9Y4F4 1720 aa12□□□□□ -0.49
TRIM39-202ENST00000376659 SLKQ9H2G2 1235 aaPredicted RBP11.99□□□□□ -0.49
TRIM39-202ENST00000376659 DDX60Q8IY21 1712 aaKnown RBP11.99□□□□□ -0.49
TRIM39-202ENST00000376659 STRCQ7RTU9 1775 aa11.99□□□□□ -0.49
TRIM39-202ENST00000376659 IL27Q8NEV9 243 aa11.99□□□□□ -0.49
TRIM39-202ENST00000376659 IP6K1Q92551 441 aa11.99□□□□□ -0.49
TRIM39-202ENST00000376659 UPF2Q9HAU5 1272 aaKnown RBP11.99□□□□□ -0.49
TRIM39-202ENST00000376659 C1orf167Q5SNV9 1468 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 GNAT3A8MTJ3 354 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 SLC4A2P04920 1241 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 CYP2E1P05181 493 aaPredicted RBP11.98□□□□□ -0.49
TRIM39-202ENST00000376659 USP26Q9BXU7 913 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 ADCY9O60503 1353 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 PLEKHG2Q9H7P9 1386 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 CDC45O75419 566 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 RAB3GAP1Q15042 981 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 WNK3Q9BYP7 1800 aa11.98□□□□□ -0.49
TRIM39-202ENST00000376659 MCM4P33991 863 aa11.97□□□□□ -0.49
TRIM39-202ENST00000376659 RBM42Q9BTD8 480 aaKnown RBP11.97□□□□□ -0.49
TRIM39-202ENST00000376659 TSPYL4Q9UJ04 414 aa11.97□□□□□ -0.49
TRIM39-202ENST00000376659 SDSP20132 328 aa11.97□□□□□ -0.49
TRIM39-202ENST00000376659 F6X3S4 739 aa11.96□□□□□ -0.49
TRIM39-202ENST00000376659 CCT4P50991 539 aaKnown RBP11.96□□□□□ -0.49
TRIM39-202ENST00000376659 HAP1P54257 671 aaPredicted RBP11.96□□□□□ -0.49
TRIM39-202ENST00000376659 NBPF6Q5VWK0 638 aa11.96□□□□□ -0.49
TRIM39-202ENST00000376659 NBPF4Q96M43 638 aa11.96□□□□□ -0.49
TRIM39-202ENST00000376659 DCCP43146 1447 aa11.96□□□□□ -0.49
TRIM39-202ENST00000376659 KDM6AO15550 1401 aaPredicted RBP11.96□□□□□ -0.5
TRIM39-202ENST00000376659 POLA2Q14181 598 aa11.96□□□□□ -0.5
TRIM39-202ENST00000376659 CHMP5Q9NZZ3 219 aa11.96□□□□□ -0.5
TRIM39-202ENST00000376659 SMARCA5O60264 1052 aaPredicted RBP11.95□□□□□ -0.5
TRIM39-202ENST00000376659 FLIIQ13045 1269 aa11.95□□□□□ -0.5
TRIM39-202ENST00000376659 NGDNQ8NEJ9 315 aaKnown RBP11.95□□□□□ -0.5
TRIM39-202ENST00000376659 BRPF3Q9ULD4 1205 aa11.95□□□□□ -0.5
TRIM39-202ENST00000376659 PHF8Q9UPP1 1060 aa11.95□□□□□ -0.5
TRIM39-202ENST00000376659 PNMA6EA0A0J9YXQ4 647 aa11.95□□□□□ -0.5
TRIM39-202ENST00000376659 NLRP6P59044 892 aa11.95□□□□□ -0.5
TRIM39-202ENST00000376659 STAP2Q9UGK3 403 aa11.95□□□□□ -0.5
TRIM39-202ENST00000376659 CIZ1Q9ULV3 898 aaPredicted RBP11.94□□□□□ -0.5
TRIM39-202ENST00000376659 EIF4A1P60842 406 aaKnown RBP11.94□□□□□ -0.5
TRIM39-202ENST00000376659 USP44Q9H0E7 712 aa11.94□□□□□ -0.5
TRIM39-202ENST00000376659 MEGF6O75095 1541 aa11.93□□□□□ -0.5
TRIM39-202ENST00000376659 HOXB7P09629 217 aa11.93□□□□□ -0.5
TRIM39-202ENST00000376659 ARHGEF25Q86VW2 580 aa11.93□□□□□ -0.5
TRIM39-202ENST00000376659 USP42Q9H9J4 1324 aaKnown RBP11.93□□□□□ -0.5
TRIM39-202ENST00000376659 AMPHP49418 695 aa11.93□□□□□ -0.5
TRIM39-202ENST00000376659 PDE1AP54750 535 aa11.93□□□□□ -0.5
TRIM39-202ENST00000376659 NHSL1Q5SYE7 1610 aa11.93□□□□□ -0.5
TRIM39-202ENST00000376659 AOX1Q06278 1338 aa11.92□□□□□ -0.5
TRIM39-202ENST00000376659 LAMA4Q16363 1823 aa11.92□□□□□ -0.5
TRIM39-202ENST00000376659 K7ELQ4 463 aaPredicted RBP11.92□□□□□ -0.5
TRIM39-202ENST00000376659 TAF7Q15545 349 aaPredicted RBP11.92□□□□□ -0.5
TRIM39-202ENST00000376659 USHBP1Q8N6Y0 703 aa11.92□□□□□ -0.5
TRIM39-202ENST00000376659 TNPO1Q92973 898 aaKnown RBP11.92□□□□□ -0.5
TRIM39-202ENST00000376659 ATP8B2P98198 1209 aa11.92□□□□□ -0.5
TRIM39-202ENST00000376659 ABTB2Q8N961 1025 aa11.92□□□□□ -0.5
TRIM39-202ENST00000376659 SSH3Q8TE77 659 aa11.92□□□□□ -0.5
TRIM39-202ENST00000376659 MYH15Q9Y2K3 1946 aa11.92□□□□□ -0.5
TRIM39-202ENST00000376659 SOX12O15370 315 aa11.91□□□□□ -0.5
TRIM39-202ENST00000376659 NUTM2GQ5VZR2 741 aa11.91□□□□□ -0.5
TRIM39-202ENST00000376659 IL25Q9H293 177 aa11.91□□□□□ -0.5
TRIM39-202ENST00000376659 PLCH1Q4KWH8 1693 aa11.91□□□□□ -0.5
TRIM39-202ENST00000376659 LGR6Q9HBX8 967 aa11.91□□□□□ -0.5
TRIM39-202ENST00000376659 CCDC30Q5VVM6 783 aa11.9□□□□□ -0.5
TRIM39-202ENST00000376659 PHAXQ9H814 394 aaKnown RBP11.9□□□□□ -0.5
TRIM39-202ENST00000376659 KCPQ6ZWJ8 1503 aa11.9□□□□□ -0.5
TRIM39-202ENST00000376659 BEND3Q5T5X7 828 aa11.9□□□□□ -0.5
TRIM39-202ENST00000376659 HSCBQ8IWL3 235 aa11.9□□□□□ -0.5
TRIM39-202ENST00000376659 UTYO14607 1347 aa11.9□□□□□ -0.51
TRIM39-202ENST00000376659 ANKLE2Q86XL3 938 aa11.9□□□□□ -0.51
TRIM39-202ENST00000376659 AXIN2Q9Y2T1 843 aa11.9□□□□□ -0.51
TRIM39-202ENST00000376659 KCNQ3O43525 872 aa11.89□□□□□ -0.51
TRIM39-202ENST00000376659 GNAI2P04899 355 aa11.89□□□□□ -0.51
TRIM39-202ENST00000376659 LRP10Q7Z4F1 713 aa11.89□□□□□ -0.51
TRIM39-202ENST00000376659 PI4K2BQ8TCG2 481 aa11.89□□□□□ -0.51
TRIM39-202ENST00000376659 RTF1Q92541 710 aaKnown RBP11.89□□□□□ -0.51
TRIM39-202ENST00000376659 MTX1Q13505 466 aa11.89□□□□□ -0.51
TRIM39-202ENST00000376659 ZDHHC9Q9Y397 364 aa11.89□□□□□ -0.51
TRIM39-202ENST00000376659 AKAP4Q5JQC9 854 aa11.88□□□□□ -0.51
TRIM39-202ENST00000376659 SPRYD3Q8NCJ5 442 aa11.88□□□□□ -0.51
TRIM39-202ENST00000376659 UNC5CLQ8IV45 518 aa11.88□□□□□ -0.51
TRIM39-202ENST00000376659 PDIA6Q15084 440 aa11.87□□□□□ -0.51
TRIM39-202ENST00000376659 RABEP1Q15276 862 aa11.87□□□□□ -0.51
TRIM39-202ENST00000376659 LRRC59Q96AG4 307 aaKnown RBP11.87□□□□□ -0.51
TRIM39-202ENST00000376659 ORAI2Q96SN7 254 aa11.87□□□□□ -0.51
TRIM39-202ENST00000376659 JCADQ9P266 1359 aa11.87□□□□□ -0.51
TRIM39-202ENST00000376659 KCNH5Q8NCM2 988 aa11.87□□□□□ -0.51
TRIM39-202ENST00000376659 RBM33Q96EV2 1170 aaKnown RBP11.87□□□□□ -0.51
TRIM39-202ENST00000376659 LRRFIP2Q9Y608 721 aaKnown RBP11.87□□□□□ -0.51
TRIM39-202ENST00000376659 ANKRD36CQ5JPF3 1778 aa11.87□□□□□ -0.51
TRIM39-202ENST00000376659 PLPPR3Q6T4P5 718 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms