RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 KIAA0586Q9BVV6 1533 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 TNNT1P13805 278 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 RARSP54136 660 aaKnown RBP11.88□□□□□ -0.51
PTCH1-204ENST00000375290 SMC1AQ14683 1233 aaKnown RBP11.88□□□□□ -0.51
PTCH1-204ENST00000375290 FAM200AQ8TCP9 573 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 GNL3LQ9NVN8 582 aaKnown RBP11.88□□□□□ -0.51
PTCH1-204ENST00000375290 CETN2P41208 172 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 SEPT7Q16181 437 aaKnown RBP11.88□□□□□ -0.51
PTCH1-204ENST00000375290 KIAA1328Q86T90 577 aa11.88□□□□□ -0.51
PTCH1-204ENST00000375290 SOX12O15370 315 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 CCDC91Q7Z6B0 441 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 SMC5Q8IY18 1101 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 SPC24Q8NBT2 197 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 ARFGAP3Q9NP61 516 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 ALS2CR12Q96Q35 445 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 ELL2O00472 640 aaPredicted RBP11.87□□□□□ -0.51
PTCH1-204ENST00000375290 MYO1BO43795 1136 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 VPS37DQ86XT2 251 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 MX1P20591 662 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 OGFRQ9NZT2 677 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 SPA17Q15506 151 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 ZNF287Q9HBT7 754 aa11.87□□□□□ -0.51
PTCH1-204ENST00000375290 CTCFLQ8NI51 663 aaPredicted RBP11.86□□□□□ -0.51
PTCH1-204ENST00000375290 STMN4Q9H169 189 aaPredicted RBP11.86□□□□□ -0.51
PTCH1-204ENST00000375290 PIP4K2BP78356 416 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 TAF4BQ92750 862 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 LAMC3Q9Y6N6 1575 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 PIK3C2GO75747 1445 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 CFAP100Q494V2 611 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 ZMYND15Q9H091 742 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 CEP112Q8N8E3 955 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 TRIM34Q9BYJ4 488 aa11.86□□□□□ -0.51
PTCH1-204ENST00000375290 TOP1P11387 765 aaKnown RBP11.86□□□□□ -0.51
PTCH1-204ENST00000375290 GTF2E1P29083 439 aaPredicted RBP11.86□□□□□ -0.51
PTCH1-204ENST00000375290 IFI16Q16666 785 aaKnown RBP11.86□□□□□ -0.51
PTCH1-204ENST00000375290 PLEKHO1Q53GL0 409 aaPredicted RBP11.86□□□□□ -0.51
PTCH1-204ENST00000375290 BBXQ8WY36 941 aaPredicted RBP11.86□□□□□ -0.51
PTCH1-204ENST00000375290 PAFAH1B1P43034 410 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 NPC1L1Q9UHC9 1359 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 MAPKBP1O60336 1514 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 RAB34Q9BZG1 259 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 RIC3Q7Z5B4 369 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 FAM114A1Q8IWE2 563 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 SMARCC1Q92922 1105 aaPredicted RBP11.85□□□□□ -0.51
PTCH1-204ENST00000375290 PARD3Q8TEW0 1356 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 PRKAR2BP31323 418 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 SPAG1Q07617 926 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 NFE2L2Q16236 605 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 PPP4R3BQ5MIZ7 849 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 BAG4O95429 457 aaKnown RBP11.85□□□□□ -0.51
PTCH1-204ENST00000375290 YEATS4O95619 227 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 HSP90AB3PQ58FF7 597 aa11.85□□□□□ -0.51
PTCH1-204ENST00000375290 FKBP15Q5T1M5 1219 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 SNW1Q13573 536 aaKnown RBP11.84□□□□□ -0.51
PTCH1-204ENST00000375290 VPS53Q5VIR6 699 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 TOPBP1Q92547 1522 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 BCAR3O75815 825 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 G3V3G9 751 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 DCAF8Q5TAQ9 597 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 SPATA24Q86W54 205 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 ANKRD36BQ8N2N9 1353 aa11.84□□□□□ -0.51
PTCH1-204ENST00000375290 WASHC4Q2M389 1173 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 LRRC27Q9C0I9 530 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 ADCY5O95622 1261 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 RAPGEF4Q8WZA2 1011 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 CEP135Q66GS9 1140 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 ANKS4BQ8N8V4 417 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 ARFGAP2Q8N6H7 521 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 AKAP2Q9Y2D5 859 aa11.83□□□□□ -0.52
PTCH1-204ENST00000375290 ZSCAN23Q3MJ62 389 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 DNAI2Q9GZS0 605 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.82□□□□□ -0.52
PTCH1-204ENST00000375290 NOLC1Q14978 699 aaKnown RBP eCLIP11.82□□□□□ -0.52
PTCH1-204ENST00000375290 HOOK3Q86VS8 718 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 IBTKQ9P2D0 1353 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-204ENST00000375290 RAB3GAP1Q15042 981 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 DUSP27Q5VZP5 1158 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 CCDC69A6NI79 296 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 OPA1O60313 960 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 CCDC50Q8IVM0 306 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 TTC14Q96N46 770 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 STX6O43752 255 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 TEX14Q8IWB6 1497 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 SLC4A2P04920 1241 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 XRCC6P12956 609 aaKnown RBP eCLIP11.82□□□□□ -0.52
PTCH1-204ENST00000375290 PLVAPQ9BX97 442 aa11.82□□□□□ -0.52
PTCH1-204ENST00000375290 NSRP1Q9H0G5 558 aaKnown RBP11.82□□□□□ -0.52
PTCH1-204ENST00000375290 MINK1Q8N4C8 1332 aaPredicted RBP11.82□□□□□ -0.52
PTCH1-204ENST00000375290 SHANK2Q9UPX8 1470 aa11.81□□□□□ -0.52
PTCH1-204ENST00000375290 CASTP20810 708 aaKnown RBP11.81□□□□□ -0.52
PTCH1-204ENST00000375290 NSD3Q9BZ95 1437 aa11.81□□□□□ -0.52
PTCH1-204ENST00000375290 SLU7O95391 586 aaKnown RBP11.81□□□□□ -0.52
PTCH1-204ENST00000375290 CCDC172P0C7W6 258 aa11.81□□□□□ -0.52
PTCH1-204ENST00000375290 PRPHP41219 470 aa11.81□□□□□ -0.52
PTCH1-204ENST00000375290 ENOX2Q16206 610 aaKnown RBP11.81□□□□□ -0.52
PTCH1-204ENST00000375290 SPATS2Q86XZ4 545 aaKnown RBP11.81□□□□□ -0.52
PTCH1-204ENST00000375290 NPHP3Q7Z494 1330 aa11.81□□□□□ -0.52
PTCH1-204ENST00000375290 CCDC175P0C221 793 aa11.81□□□□□ -0.52
PTCH1-204ENST00000375290 TTC21BQ7Z4L5 1316 aa11.81□□□□□ -0.52
PTCH1-204ENST00000375290 PATL2C9JE40 543 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms