RNA–Protein interactions for RNA: ENST00000373010.5

USP49-202, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 5 BASIC

Gene USP49, Length 2,446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-202ENST00000373010 ARHGEF25Q86VW2 580 aa23.24■■□□□ 1.31
USP49-202ENST00000373010 ZNF530Q6P9A1 599 aaPredicted RBP23.23■■□□□ 1.31
USP49-202ENST00000373010 PHAXQ9H814 394 aaKnown RBP23.23■■□□□ 1.31
USP49-202ENST00000373010 MED1Q15648 1581 aaPredicted RBP23.23■■□□□ 1.31
USP49-202ENST00000373010 KCNQ3O43525 872 aa23.22■■□□□ 1.31
USP49-202ENST00000373010 SNX21Q969T3 373 aa23.22■■□□□ 1.31
USP49-202ENST00000373010 SLIT3O75094 1523 aa23.22■■□□□ 1.31
USP49-202ENST00000373010 EIF2S2P20042 333 aaKnown RBP23.21■■□□□ 1.31
USP49-202ENST00000373010 EIF4A1P60842 406 aaKnown RBP23.21■■□□□ 1.31
USP49-202ENST00000373010 KRT28Q7Z3Y7 464 aa23.21■■□□□ 1.31
USP49-202ENST00000373010 EXOC6BQ9Y2D4 811 aa23.21■■□□□ 1.31
USP49-202ENST00000373010 TRPM3Q9HCF6 1732 aaPredicted RBP23.21■■□□□ 1.31
USP49-202ENST00000373010 LMO7Q8WWI1 1683 aa23.21■■□□□ 1.31
USP49-202ENST00000373010 GNAI3P08754 354 aa23.21■■□□□ 1.31
USP49-202ENST00000373010 MPRIPQ6WCQ1 1025 aa23.21■■□□□ 1.31
USP49-202ENST00000373010 SDSP20132 328 aa23.2■■□□□ 1.3
USP49-202ENST00000373010 ANKRD24Q8TF21 1146 aa23.2■■□□□ 1.3
USP49-202ENST00000373010 KDM3BQ7LBC6 1761 aa23.2■■□□□ 1.3
USP49-202ENST00000373010 PLEKHO1Q53GL0 409 aaPredicted RBP23.2■■□□□ 1.3
USP49-202ENST00000373010 AKAP4Q5JQC9 854 aa23.2■■□□□ 1.3
USP49-202ENST00000373010 RBM42Q9BTD8 480 aaKnown RBP23.2■■□□□ 1.3
USP49-202ENST00000373010 N4BP2Q86UW6 1770 aaPredicted RBP23.2■■□□□ 1.3
USP49-202ENST00000373010 PNMA6EA0A0J9YXQ4 647 aa23.19■■□□□ 1.3
USP49-202ENST00000373010 PXDNQ92626 1479 aa23.19■■□□□ 1.3
USP49-202ENST00000373010 CHMP5Q9NZZ3 219 aa23.19■■□□□ 1.3
USP49-202ENST00000373010 AXIN2Q9Y2T1 843 aa23.19■■□□□ 1.3
USP49-202ENST00000373010 LRRFIP2Q9Y608 721 aaKnown RBP23.19■■□□□ 1.3
USP49-202ENST00000373010 CD2BP2O95400 341 aaKnown RBP23.18■■□□□ 1.3
USP49-202ENST00000373010 TEFQ10587 303 aa23.18■■□□□ 1.3
USP49-202ENST00000373010 C1orf167Q5SNV9 1468 aa23.18■■□□□ 1.3
USP49-202ENST00000373010 ATP8B2P98198 1209 aa23.17■■□□□ 1.3
USP49-202ENST00000373010 USP44Q9H0E7 712 aa23.17■■□□□ 1.3
USP49-202ENST00000373010 NCOA3Q9Y6Q9 1424 aa23.17■■□□□ 1.3
USP49-202ENST00000373010 PXDNLA1KZ92 1463 aa23.16■■□□□ 1.3
USP49-202ENST00000373010 BTBD11A6QL63 1104 aa23.16■■□□□ 1.3
USP49-202ENST00000373010 CHPF2Q9P2E5 772 aa23.16■■□□□ 1.3
USP49-202ENST00000373010 RGPD5Q99666 1765 aa23.15■■□□□ 1.3
USP49-202ENST00000373010 RNMTO43148 476 aaKnown RBP23.15■■□□□ 1.3
USP49-202ENST00000373010 HSP90AB1P08238 724 aaKnown RBP23.15■■□□□ 1.3
USP49-202ENST00000373010 NCAPD2Q15021 1401 aa23.15■■□□□ 1.3
USP49-202ENST00000373010 AMOTQ4VCS5 1084 aa23.15■■□□□ 1.3
USP49-202ENST00000373010 C19orf44Q9H6X5 657 aa23.15■■□□□ 1.3
USP49-202ENST00000373010 PDE1AP54750 535 aa23.14■■□□□ 1.3
USP49-202ENST00000373010 C1orf141Q5JVX7 400 aa23.14■■□□□ 1.29
USP49-202ENST00000373010 KIF1AQ12756 1690 aa23.14■■□□□ 1.29
USP49-202ENST00000373010 ANXA1P04083 346 aa23.13■■□□□ 1.29
USP49-202ENST00000373010 UBTFL1P0CB47 393 aaPredicted RBP23.13■■□□□ 1.29
USP49-202ENST00000373010 TSHZ3Q63HK5 1081 aa23.13■■□□□ 1.29
USP49-202ENST00000373010 USP26Q9BXU7 913 aa23.13■■□□□ 1.29
USP49-202ENST00000373010 ZC3H6P61129 1189 aaKnown RBP23.12■■□□□ 1.29
USP49-202ENST00000373010 LRRCC1Q9C099 1032 aa23.12■■□□□ 1.29
USP49-202ENST00000373010 HOXB7P09629 217 aa23.12■■□□□ 1.29
USP49-202ENST00000373010 DDIT3P35638 169 aa23.12■■□□□ 1.29
USP49-202ENST00000373010 OSBPL3Q9H4L5 887 aa23.12■■□□□ 1.29
USP49-202ENST00000373010 DDX17Q92841 729 aaKnown RBP23.11■■□□□ 1.29
USP49-202ENST00000373010 SRCIN1Q9C0H9 1055 aa23.11■■□□□ 1.29
USP49-202ENST00000373010 CAMTA1Q9Y6Y1 1673 aa23.1■■□□□ 1.29
USP49-202ENST00000373010 IBTKQ9P2D0 1353 aaPredicted RBP23.1■■□□□ 1.29
USP49-202ENST00000373010 CASC1Q6TDU7 716 aa23.1■■□□□ 1.29
USP49-202ENST00000373010 SALL3Q9BXA9 1300 aa23.1■■□□□ 1.29
USP49-202ENST00000373010 MCM4P33991 863 aa23.1■■□□□ 1.29
USP49-202ENST00000373010 FOXD4L1Q9NU39 408 aa23.1■■□□□ 1.29
USP49-202ENST00000373010 PI4KAP2A4QPH2 592 aa23.09■■□□□ 1.29
USP49-202ENST00000373010 EIF5BO60841 1220 aaKnown RBP23.09■■□□□ 1.29
USP49-202ENST00000373010 PI4KAP1Q8N8J0 262 aa23.09■■□□□ 1.29
USP49-202ENST00000373010 ALS2Q96Q42 1657 aa23.09■■□□□ 1.29
USP49-202ENST00000373010 K7ELQ4 463 aaPredicted RBP23.09■■□□□ 1.29
USP49-202ENST00000373010 DNAAF4Q8WXU2 420 aa23.08■■□□□ 1.28
USP49-202ENST00000373010 ATF3P18847 181 aa23.07■■□□□ 1.28
USP49-202ENST00000373010 MX1P20591 662 aa23.07■■□□□ 1.28
USP49-202ENST00000373010 BEND3Q5T5X7 828 aa23.07■■□□□ 1.28
USP49-202ENST00000373010 ERBB3P21860 1342 aa23.07■■□□□ 1.28
USP49-202ENST00000373010 TMEM94Q12767 1356 aa23.07■■□□□ 1.28
USP49-202ENST00000373010 NBPF7P0C2Y1 421 aaPredicted RBP23.06■■□□□ 1.28
USP49-202ENST00000373010 MST1RQ04912 1400 aa23.06■■□□□ 1.28
USP49-202ENST00000373010 SSH3Q8TE77 659 aa23.06■■□□□ 1.28
USP49-202ENST00000373010 TUBGCP6Q96RT7 1819 aa23.06■■□□□ 1.28
USP49-202ENST00000373010 STRCP1A6NGW2 1772 aa23.06■■□□□ 1.28
USP49-202ENST00000373010 PRAMEF22A3QJZ6 481 aa23.06■■□□□ 1.28
USP49-202ENST00000373010 HSP90AA1P07900 732 aaKnown RBP23.06■■□□□ 1.28
USP49-202ENST00000373010 PPP1R42Q7Z4L9 355 aa23.06■■□□□ 1.28
USP49-202ENST00000373010 ADCY9O60503 1353 aa23.05■■□□□ 1.28
USP49-202ENST00000373010 RABEP1Q15276 862 aa23.05■■□□□ 1.28
USP49-202ENST00000373010 OVOS2A0A0G2JMS6 1433 aa23.05■■□□□ 1.28
USP49-202ENST00000373010 GIGYF1O75420 1035 aaPredicted RBP23.04■■□□□ 1.28
USP49-202ENST00000373010 PROSER3Q2NL68 480 aa23.04■■□□□ 1.28
USP49-202ENST00000373010 CHMP4AQ9BY43 222 aa23.04■■□□□ 1.28
USP49-202ENST00000373010 IL1RAPL2Q9NP60 686 aa23.04■■□□□ 1.28
USP49-202ENST00000373010 ERC2O15083 957 aa23.03■■□□□ 1.28
USP49-202ENST00000373010 DBF4Q9UBU7 674 aaPredicted RBP23.03■■□□□ 1.28
USP49-202ENST00000373010 SIPA1L3O60292 1781 aaPredicted RBP23.03■■□□□ 1.28
USP49-202ENST00000373010 NLRP2Q9NX02 1062 aa23.03■■□□□ 1.28
USP49-202ENST00000373010 REC8O95072 547 aa23.02■■□□□ 1.28
USP49-202ENST00000373010 POLA2Q14181 598 aa23.02■■□□□ 1.28
USP49-202ENST00000373010 SURF6O75683 361 aaKnown RBP23.02■■□□□ 1.28
USP49-202ENST00000373010 HEG1Q9ULI3 1381 aa23.02■■□□□ 1.28
USP49-202ENST00000373010 CABLES1Q8TDN4 633 aa23.01■■□□□ 1.27
USP49-202ENST00000373010 CIZ1Q9ULV3 898 aaPredicted RBP23.01■■□□□ 1.27
USP49-202ENST00000373010 SRGAP3O43295 1099 aa23.01■■□□□ 1.27
USP49-202ENST00000373010 STAP2Q9UGK3 403 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms