RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 DYNC1I1O14576 645 aa16.63■□□□□ 0.25
USP49-201ENST00000373006 CBX1P83916 185 aa16.63■□□□□ 0.25
USP49-201ENST00000373006 ESYT1Q9BSJ8 1104 aa16.63■□□□□ 0.25
USP49-201ENST00000373006 YEATS2Q9ULM3 1422 aa16.63■□□□□ 0.25
USP49-201ENST00000373006 HMMRO75330 724 aa16.62■□□□□ 0.25
USP49-201ENST00000373006 CHL1O00533 1208 aa16.62■□□□□ 0.25
USP49-201ENST00000373006 USP48Q86UV5 1035 aa16.61■□□□□ 0.25
USP49-201ENST00000373006 C17orf53Q8N3J3 647 aaPredicted RBP16.61■□□□□ 0.25
USP49-201ENST00000373006 KIAA2012Q0VF49 1180 aa16.61■□□□□ 0.25
USP49-201ENST00000373006 KIF20BQ96Q89 1820 aa16.61■□□□□ 0.25
USP49-201ENST00000373006 USP25Q9UHP3 1055 aa16.6■□□□□ 0.25
USP49-201ENST00000373006 CUL4AQ13619 759 aa16.6■□□□□ 0.25
USP49-201ENST00000373006 LARP6Q9BRS8 491 aaKnown RBP16.6■□□□□ 0.25
USP49-201ENST00000373006 DTNBO60941 627 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 OSBPL3Q9H4L5 887 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 VGLL3A8MV65 326 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 PTPRCP08575 1304 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 MCCP23508 829 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 UNC5CLQ8IV45 518 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 SYAP1Q96A49 352 aaPredicted RBP16.59■□□□□ 0.25
USP49-201ENST00000373006 TTC12Q9H892 705 aaPredicted RBP16.59■□□□□ 0.25
USP49-201ENST00000373006 MYO5BQ9ULV0 1848 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 MCM2P49736 904 aa16.59■□□□□ 0.25
USP49-201ENST00000373006 EIF4A2Q14240 407 aaKnown RBP16.59■□□□□ 0.25
USP49-201ENST00000373006 DLG5Q8TDM6 1919 aa16.58■□□□□ 0.24
USP49-201ENST00000373006 PLCB2Q00722 1185 aa16.58■□□□□ 0.24
USP49-201ENST00000373006 MX1P20591 662 aa16.58■□□□□ 0.24
USP49-201ENST00000373006 CHMLP26374 656 aa16.58■□□□□ 0.24
USP49-201ENST00000373006 HAP1P54257 671 aaPredicted RBP16.58■□□□□ 0.24
USP49-201ENST00000373006 NECTIN2Q92692 538 aa16.58■□□□□ 0.24
USP49-201ENST00000373006 WASLO00401 505 aaPredicted RBP16.57■□□□□ 0.24
USP49-201ENST00000373006 FOXO3O43524 673 aa16.57■□□□□ 0.24
USP49-201ENST00000373006 IL25Q9H293 177 aa16.57■□□□□ 0.24
USP49-201ENST00000373006 PNMA6EA0A0J9YXQ4 647 aa16.57■□□□□ 0.24
USP49-201ENST00000373006 NUDT16Q96DE0 195 aaKnown RBP16.57■□□□□ 0.24
USP49-201ENST00000373006 LRRCC1Q9C099 1032 aa16.57■□□□□ 0.24
USP49-201ENST00000373006 ESF1Q9H501 851 aaKnown RBP16.57■□□□□ 0.24
USP49-201ENST00000373006 CDK12Q9NYV4 1490 aaPredicted RBP16.56■□□□□ 0.24
USP49-201ENST00000373006 CLTCQ00610 1675 aaKnown RBP16.56■□□□□ 0.24
USP49-201ENST00000373006 ALKQ9UM73 1620 aa16.56■□□□□ 0.24
USP49-201ENST00000373006 MAP4K4O95819 1239 aaPredicted RBP16.56■□□□□ 0.24
USP49-201ENST00000373006 GNAI2P04899 355 aa16.56■□□□□ 0.24
USP49-201ENST00000373006 HCLS1P14317 486 aaPredicted RBP16.56■□□□□ 0.24
USP49-201ENST00000373006 INTS4Q96HW7 963 aaKnown RBP16.56■□□□□ 0.24
USP49-201ENST00000373006 CPSF1Q10570 1443 aaKnown RBP16.56■□□□□ 0.24
USP49-201ENST00000373006 CNPY2Q9Y2B0 182 aa16.55■□□□□ 0.24
USP49-201ENST00000373006 EDC4Q6P2E9 1401 aaKnown RBP16.55■□□□□ 0.24
USP49-201ENST00000373006 ADCY5O95622 1261 aa16.55■□□□□ 0.24
USP49-201ENST00000373006 HSP90AB2PQ58FF8 381 aa16.55■□□□□ 0.24
USP49-201ENST00000373006 ATP7BP35670 1465 aa16.55■□□□□ 0.24
USP49-201ENST00000373006 SPDYE4A6NLX3 237 aa16.54■□□□□ 0.24
USP49-201ENST00000373006 NOLC1Q14978 699 aaKnown RBP eCLIP16.54■□□□□ 0.24
USP49-201ENST00000373006 SRCIN1Q9C0H9 1055 aa16.54■□□□□ 0.24
USP49-201ENST00000373006 IL1RAPL2Q9NP60 686 aa16.54■□□□□ 0.24
USP49-201ENST00000373006 PLCD3Q8N3E9 789 aa16.54■□□□□ 0.24
USP49-201ENST00000373006 TSPYL4Q9UJ04 414 aa16.54■□□□□ 0.24
USP49-201ENST00000373006 AATKQ6ZMQ8 1374 aa16.54■□□□□ 0.24
USP49-201ENST00000373006 PHF14O94880 888 aa16.54■□□□□ 0.24
USP49-201ENST00000373006 MTERF4Q7Z6M4 381 aaKnown RBP16.53■□□□□ 0.24
USP49-201ENST00000373006 CCT4P50991 539 aaKnown RBP16.53■□□□□ 0.24
USP49-201ENST00000373006 MYRIPQ8NFW9 859 aa16.53■□□□□ 0.24
USP49-201ENST00000373006 SALL3Q9BXA9 1300 aa16.53■□□□□ 0.24
USP49-201ENST00000373006 WDR33Q9C0J8 1336 aaKnown RBP16.53■□□□□ 0.24
USP49-201ENST00000373006 TMEM131LA2VDJ0 1609 aa16.53■□□□□ 0.24
USP49-201ENST00000373006 CPS1P31327 1500 aa16.53■□□□□ 0.24
USP49-201ENST00000373006 KIAA0232Q92628 1395 aa16.52■□□□□ 0.24
USP49-201ENST00000373006 ANAPC15P60006 121 aa16.52■□□□□ 0.24
USP49-201ENST00000373006 CCDC61Q9Y6R9 512 aa16.52■□□□□ 0.24
USP49-201ENST00000373006 FKBP5Q13451 457 aaPredicted RBP16.52■□□□□ 0.23
USP49-201ENST00000373006 NUTM1Q86Y26 1132 aa16.52■□□□□ 0.23
USP49-201ENST00000373006 PIBF1Q8WXW3 757 aa16.52■□□□□ 0.23
USP49-201ENST00000373006 FIBPO43427 364 aa16.5■□□□□ 0.23
USP49-201ENST00000373006 ZNF710Q8N1W2 664 aa16.5■□□□□ 0.23
USP49-201ENST00000373006 CCDC183Q5T5S1 534 aa16.5■□□□□ 0.23
USP49-201ENST00000373006 CCDC94Q9BW85 323 aaPredicted RBP16.5■□□□□ 0.23
USP49-201ENST00000373006 LRRFIP2Q9Y608 721 aaKnown RBP16.5■□□□□ 0.23
USP49-201ENST00000373006 GIMAP6Q6P9H5 292 aa16.49■□□□□ 0.23
USP49-201ENST00000373006 RTF1Q92541 710 aaKnown RBP16.49■□□□□ 0.23
USP49-201ENST00000373006 ZBTB22O15209 634 aa16.49■□□□□ 0.23
USP49-201ENST00000373006 CPA1P15085 419 aa16.49■□□□□ 0.23
USP49-201ENST00000373006 FAM184AQ8NB25 1140 aa16.49■□□□□ 0.23
USP49-201ENST00000373006 STK31Q9BXU1 1019 aa16.49■□□□□ 0.23
USP49-201ENST00000373006 ATP8B2P98198 1209 aa16.48■□□□□ 0.23
USP49-201ENST00000373006 MTHFSDQ2M296 383 aaKnown RBP16.48■□□□□ 0.23
USP49-201ENST00000373006 SMAP1Q8IYB5 467 aaPredicted RBP16.48■□□□□ 0.23
USP49-201ENST00000373006 TSPOAP1O95153 1857 aa16.48■□□□□ 0.23
USP49-201ENST00000373006 UVSSAQ2YD98 709 aa16.48■□□□□ 0.23
USP49-201ENST00000373006 RPAP1Q9BWH6 1393 aaPredicted RBP16.47■□□□□ 0.23
USP49-201ENST00000373006 SYT1P21579 422 aa16.47■□□□□ 0.23
USP49-201ENST00000373006 HSPA4P34932 840 aa16.47■□□□□ 0.23
USP49-201ENST00000373006 FLIIQ13045 1269 aa16.47■□□□□ 0.23
USP49-201ENST00000373006 DIP2CQ9Y2E4 1556 aa16.47■□□□□ 0.23
USP49-201ENST00000373006 ZSCAN22P10073 491 aaPredicted RBP16.47■□□□□ 0.23
USP49-201ENST00000373006 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
USP49-201ENST00000373006 SPC24Q8NBT2 197 aa16.47■□□□□ 0.23
USP49-201ENST00000373006 TCHHQ07283 1943 aa16.47■□□□□ 0.23
USP49-201ENST00000373006 AK2P54819 239 aa16.46■□□□□ 0.23
USP49-201ENST00000373006 RASEFQ8IZ41 740 aa16.46■□□□□ 0.23
USP49-201ENST00000373006 CRB1P82279 1406 aa16.46■□□□□ 0.23
USP49-201ENST00000373006 STX6O43752 255 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 104.7 ms