RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 NSD2O96028 1365 aa10.92□□□□□ -0.66
ATG4A-203ENST00000372232 NINLQ9Y2I6 1382 aa10.92□□□□□ -0.66
ATG4A-203ENST00000372232 YTHDC2Q9H6S0 1430 aaKnown RBP10.92□□□□□ -0.66
ATG4A-203ENST00000372232 CLGNO14967 610 aa10.91□□□□□ -0.66
ATG4A-203ENST00000372232 RFX1P22670 979 aa10.91□□□□□ -0.66
ATG4A-203ENST00000372232 PRAM1Q96QH2 718 aa10.91□□□□□ -0.66
ATG4A-203ENST00000372232 CHMP5Q9NZZ3 219 aa10.91□□□□□ -0.66
ATG4A-203ENST00000372232 MTHFSP49914 203 aa10.91□□□□□ -0.66
ATG4A-203ENST00000372232 SRPK2P78362 688 aaKnown RBP10.91□□□□□ -0.66
ATG4A-203ENST00000372232 C20orf194Q5TEA3 1177 aa10.9□□□□□ -0.66
ATG4A-203ENST00000372232 KCNG1Q9UIX4 513 aa10.9□□□□□ -0.66
ATG4A-203ENST00000372232 MCM5P33992 734 aa10.9□□□□□ -0.67
ATG4A-203ENST00000372232 RFC5P40937 340 aa10.9□□□□□ -0.67
ATG4A-203ENST00000372232 ATP2B3Q16720 1220 aa10.9□□□□□ -0.67
ATG4A-203ENST00000372232 MYSM1Q5VVJ2 828 aa10.9□□□□□ -0.67
ATG4A-203ENST00000372232 TBC1D2Q9BYX2 928 aa10.9□□□□□ -0.67
ATG4A-203ENST00000372232 GPCPD1Q9NPB8 672 aa10.9□□□□□ -0.67
ATG4A-203ENST00000372232 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.9□□□□□ -0.67
ATG4A-203ENST00000372232 A0A1W2PP64 1363 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 HSP90B1P14625 803 aaKnown RBP10.89□□□□□ -0.67
ATG4A-203ENST00000372232 CCDC27Q2M243 656 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 MTMR14Q8NCE2 650 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 YY1AP1Q9H869 796 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 ALKQ9UM73 1620 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 NKTRP30414 1462 aaKnown RBP10.89□□□□□ -0.67
ATG4A-203ENST00000372232 ATAD2Q6PL18 1390 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 ABCC11Q96J66 1382 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 NASPP49321 788 aaPredicted RBP10.89□□□□□ -0.67
ATG4A-203ENST00000372232 XPCQ01831 940 aaPredicted RBP10.89□□□□□ -0.67
ATG4A-203ENST00000372232 WWC1Q8IX03 1113 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 ZNF710Q8N1W2 664 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 MYRIPQ8NFW9 859 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 UPF1Q92900 1129 aaKnown RBP eCLIP10.89□□□□□ -0.67
ATG4A-203ENST00000372232 RUNDC1Q96C34 613 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 CFAP53Q96M91 514 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 IVNS1ABPQ9Y6Y0 642 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 SPATA31D1Q6ZQQ2 1576 aa10.89□□□□□ -0.67
ATG4A-203ENST00000372232 A2ML1A8K2U0 1454 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 UNCXA6NJT0 531 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 BRD1O95696 1058 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 ABL2P42684 1182 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 MAP3K9P80192 1104 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 MLECQ14165 292 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.88□□□□□ -0.67
ATG4A-203ENST00000372232 HDAC5Q9UQL6 1122 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 SHPRHQ149N8 1683 aa10.88□□□□□ -0.67
ATG4A-203ENST00000372232 KDM4FA0A1W2PPD8 638 aa10.87□□□□□ -0.67
ATG4A-203ENST00000372232 TBC1D12O60347 775 aa10.87□□□□□ -0.67
ATG4A-203ENST00000372232 FOXK1P85037 733 aa10.87□□□□□ -0.67
ATG4A-203ENST00000372232 CNPY4Q8N129 248 aa10.87□□□□□ -0.67
ATG4A-203ENST00000372232 CLTCQ00610 1675 aaKnown RBP10.87□□□□□ -0.67
ATG4A-203ENST00000372232 KCNJ4P48050 445 aa10.87□□□□□ -0.67
ATG4A-203ENST00000372232 KCNA1Q09470 495 aa10.87□□□□□ -0.67
ATG4A-203ENST00000372232 TERF2IPQ9NYB0 399 aa10.87□□□□□ -0.67
ATG4A-203ENST00000372232 IBTKQ9P2D0 1353 aaPredicted RBP10.87□□□□□ -0.67
ATG4A-203ENST00000372232 GTF2F1P35269 517 aaKnown RBP eCLIP10.86□□□□□ -0.67
ATG4A-203ENST00000372232 SKOR2Q2VWA4 1001 aaPredicted RBP10.86□□□□□ -0.67
ATG4A-203ENST00000372232 AXDND1Q5T1B0 1012 aaPredicted RBP10.86□□□□□ -0.67
ATG4A-203ENST00000372232 PLPP6Q8IY26 295 aa10.86□□□□□ -0.67
ATG4A-203ENST00000372232 RBM42Q9BTD8 480 aaKnown RBP10.86□□□□□ -0.67
ATG4A-203ENST00000372232 RIMS2Q9UQ26 1411 aa10.86□□□□□ -0.67
ATG4A-203ENST00000372232 TCP11L2Q8N4U5 519 aa10.86□□□□□ -0.67
ATG4A-203ENST00000372232 CDK19Q9BWU1 502 aa10.86□□□□□ -0.67
ATG4A-203ENST00000372232 CDHR5Q9HBB8 845 aa10.86□□□□□ -0.67
ATG4A-203ENST00000372232 GEMIN8Q9NWZ8 242 aaKnown RBP10.86□□□□□ -0.67
ATG4A-203ENST00000372232 ZKSCAN5Q9Y2L8 839 aa10.86□□□□□ -0.67
ATG4A-203ENST00000372232 CD163L1Q9NR16 1453 aa10.86□□□□□ -0.67
ATG4A-203ENST00000372232 PTMSP20962 102 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 ZNF622Q969S3 477 aaKnown RBP eCLIP10.85□□□□□ -0.67
ATG4A-203ENST00000372232 TRPC6Q9Y210 931 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 IQSEC2Q5JU85 1478 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 TULP2O00295 520 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 FYB1O15117 783 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 SEC24BO95487 1268 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 CERS3Q8IU89 383 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 PDLIM2Q96JY6 352 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 GGNBP2Q9H3C7 697 aa10.85□□□□□ -0.67
ATG4A-203ENST00000372232 ADAMTSL3P82987 1691 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 BCAR3O75815 825 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 CLK2P49760 499 aaKnown RBP10.84□□□□□ -0.67
ATG4A-203ENST00000372232 TBC1D32Q96NH3 1257 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 TMEM106CQ9BVX2 250 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 TBC1D2BQ9UPU7 963 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 RRP7AQ9Y3A4 280 aaKnown RBP10.84□□□□□ -0.67
ATG4A-203ENST00000372232 ZMYM3Q14202 1370 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 ZNF771Q7L3S4 317 aaPredicted RBP10.84□□□□□ -0.67
ATG4A-203ENST00000372232 WDR63Q8IWG1 891 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 PBXIP1Q96AQ6 731 aa10.84□□□□□ -0.67
ATG4A-203ENST00000372232 DLC1Q96QB1 1528 aa10.83□□□□□ -0.68
ATG4A-203ENST00000372232 MED14O60244 1454 aa10.83□□□□□ -0.68
ATG4A-203ENST00000372232 CCDC66A2RUB6 948 aa10.83□□□□□ -0.68
ATG4A-203ENST00000372232 U2AF1L5P0DN76 240 aaPredicted RBP10.83□□□□□ -0.68
ATG4A-203ENST00000372232 U2AF1Q01081 240 aaKnown RBP eCLIP10.83□□□□□ -0.68
ATG4A-203ENST00000372232 GABPB1Q06547 395 aaPredicted RBP10.83□□□□□ -0.68
ATG4A-203ENST00000372232 HDGFL2Q7Z4V5 671 aaPredicted RBP10.83□□□□□ -0.68
ATG4A-203ENST00000372232 WAPLQ7Z5K2 1190 aa10.83□□□□□ -0.68
ATG4A-203ENST00000372232 PRIMPOLQ96LW4 560 aa10.83□□□□□ -0.68
ATG4A-203ENST00000372232 TSPYL1Q9H0U9 437 aa10.83□□□□□ -0.68
ATG4A-203ENST00000372232 CABP1Q9NZU7 370 aa10.83□□□□□ -0.68
ATG4A-203ENST00000372232 DPY19L2Q6NUT2 758 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms