RNA–Protein interactions for RNA: ENST00000371122.8

SMARCA1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCA1, Length 4,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-202ENST00000371122 SDF4Q9BRK5 362 aa10.96□□□□□ -0.66
SMARCA1-202ENST00000371122 MBIPQ9NS73 344 aa10.96□□□□□ -0.66
SMARCA1-202ENST00000371122 PER1O15534 1290 aaPredicted RBP10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 MARCH6O60337 910 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 CSPP1Q1MSJ5 1256 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 AMOTL2Q9Y2J4 779 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 POLR1AO95602 1720 aaPredicted RBP10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 TRDNQ13061 729 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 C8orf58Q8NAV2 365 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 TCEANC2Q96MN5 208 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 ZNF692Q9BU19 519 aaPredicted RBP10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 LRRFIP2Q9Y608 721 aaKnown RBP10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 AKAP17AQ02040 695 aaKnown RBP10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 IFT57Q9NWB7 429 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 SPG7Q9UQ90 795 aa10.95□□□□□ -0.66
SMARCA1-202ENST00000371122 RABEP1Q15276 862 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 RALYLQ86SE5 291 aaKnown RBP10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 PIBF1Q8WXW3 757 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 MEIS3Q99687 375 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 LMTK3Q96Q04 1460 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 JAKMIP1Q96N16 626 aaKnown RBP10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 STRCQ7RTU9 1775 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 A2ML1A8K2U0 1454 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 CHRNA2Q15822 529 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 THEMISQ8N1K5 641 aaPredicted RBP10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 PRDM11Q9NQV5 511 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 KIF3AQ9Y496 699 aa10.94□□□□□ -0.66
SMARCA1-202ENST00000371122 SYCE3A1L190 88 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 TPD52L1Q16890 204 aaPredicted RBP10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 C14orf93Q9H972 538 aaKnown RBP10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 LRPPRCP42704 1394 aaKnown RBP10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 SPATA31E1Q6ZUB1 1445 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 NRXN1Q9ULB1 1477 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 WASLO00401 505 aaPredicted RBP10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 HSP90AB4PQ58FF6 505 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 TTLL5Q6EMB2 1281 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 SYNE3Q6ZMZ3 975 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 GRPEL1Q9HAV7 217 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 ATP5J2-PTCD1G3V325 749 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 CABP4P57796 275 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 RSPH6AQ9H0K4 717 aa10.93□□□□□ -0.66
SMARCA1-202ENST00000371122 SASS6Q6UVJ0 657 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 TBC1D9Q6ZT07 1266 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 CCDC82Q8N4S0 544 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 NEXMIFQ5QGS0 1516 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 NKTRP30414 1462 aaKnown RBP10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 GUCY1B3Q02153 619 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 CAMK4Q16566 473 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 HOMER1Q86YM7 354 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 RAB11FIP4Q86YS3 637 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 TRIM5Q9C035 493 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 NRXN3Q9Y4C0 1643 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 CCT4P50991 539 aaKnown RBP10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 TPM4P67936 248 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 CPLX2Q6PUV4 134 aaKnown RBP10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 BICDL1Q6ZP65 573 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 CCDC83Q8IWF9 413 aa10.92□□□□□ -0.66
SMARCA1-202ENST00000371122 ATAD2Q6PL18 1390 aa10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 GNAT3A8MTJ3 354 aa10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 PRPF40BQ6NWY9 871 aaKnown RBP10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 TATP17735 454 aaPredicted RBP10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 PANK2Q9BZ23 570 aa10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 CASTP20810 708 aaKnown RBP10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 TRIM29Q14134 588 aa10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 LARP1BQ659C4 914 aaKnown RBP10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 ZFYVE9O95405 1425 aa10.91□□□□□ -0.66
SMARCA1-202ENST00000371122 SLC39A6Q13433 755 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 CCDC73Q6ZRK6 1079 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 MED14O60244 1454 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 KIAA1210Q9ULL0 1709 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 C8orf34Q49A92 452 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 TNPO1Q92973 898 aaKnown RBP10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 SNRKQ9NRH2 765 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 RBM27Q9P2N5 1060 aaKnown RBP10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 ACEP12821 1306 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 PI4KAP2A4QPH2 592 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 MX1P20591 662 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 PI4KAP1Q8N8J0 262 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 CNNM1Q9NRU3 951 aa10.9□□□□□ -0.66
SMARCA1-202ENST00000371122 AAMPQ13685 434 aa10.89□□□□□ -0.67
SMARCA1-202ENST00000371122 FLIIQ13045 1269 aa10.89□□□□□ -0.67
SMARCA1-202ENST00000371122 CYP46A1Q9Y6A2 500 aa10.89□□□□□ -0.67
SMARCA1-202ENST00000371122 RPAP2Q8IXW5 612 aaPredicted RBP10.89□□□□□ -0.67
SMARCA1-202ENST00000371122 TFIP11Q9UBB9 837 aaKnown RBP10.89□□□□□ -0.67
SMARCA1-202ENST00000371122 BRPF1P55201 1214 aaPredicted RBP10.89□□□□□ -0.67
SMARCA1-202ENST00000371122 POLKQ9UBT6 870 aa10.89□□□□□ -0.67
SMARCA1-202ENST00000371122 KLHL34Q8N239 644 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 PDILTQ8N807 584 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 CABLES1Q8TDN4 633 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 MYD88Q99836 296 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 ZBTB3Q9H5J0 574 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 PRAG1Q86YV5 1406 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 SETBP1Q9Y6X0 1596 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 ANKLE2Q86XL3 938 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 FAM177A1Q8N128 213 aaPredicted RBP10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 OTUD7AQ8TE49 926 aaPredicted RBP10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 LRRC59Q96AG4 307 aaKnown RBP10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 RPGRIP1LQ68CZ1 1315 aa10.88□□□□□ -0.67
SMARCA1-202ENST00000371122 PCMTD1Q96MG8 357 aaPredicted RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms