RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 ERBINQ96RT1 1412 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 ANKRD18BA2A2Z9 1011 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 FKBP4Q02790 459 aaKnown RBP eCLIP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 NUP88Q99567 741 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 CCDC175P0C221 793 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 BLOC1S2Q6QNY1 142 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 CLIP2Q9UDT6 1046 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 FGD5Q6ZNL6 1462 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 PRKAR2BP31323 418 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 PLEKHO1Q53GL0 409 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 PPP4R3AQ6IN85 833 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 RAI14Q9P0K7 980 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 PAXBP1Q9Y5B6 917 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 TNIP1Q15025 636 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 UVSSAQ2YD98 709 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 CTR9Q6PD62 1173 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 RUSC2Q8N2Y8 1516 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 RBM42Q9BTD8 480 aaKnown RBP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 ANO10Q9NW15 660 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 CWC27Q6UX04 472 aaKnown RBP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 CCDC141Q6ZP82 1450 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 GGNBP2Q9H3C7 697 aa8.49□□□□□ -1.05
SYNE1-208ENST00000367256 SPINK5Q9NQ38 1064 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-208ENST00000367256 MACROD2A1Z1Q3 448 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 JPH4Q96JJ6 628 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 TSR2Q969E8 191 aaKnown RBP8.48□□□□□ -1.05
SYNE1-208ENST00000367256 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.48□□□□□ -1.05
SYNE1-208ENST00000367256 PHAXQ9H814 394 aaKnown RBP8.48□□□□□ -1.05
SYNE1-208ENST00000367256 HS1BP3Q53T59 392 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 ABTB2Q8N961 1025 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 FAM135AQ9P2D6 1515 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 SLC4A2P04920 1241 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 PIBF1Q8WXW3 757 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 DCAF8L1A6NGE4 600 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 TAOK3Q9H2K8 898 aa8.48□□□□□ -1.05
SYNE1-208ENST00000367256 MTHFSP49914 203 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 HDGFL1Q5TGJ6 251 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 DDX23Q9BUQ8 820 aaKnown RBP8.47□□□□□ -1.05
SYNE1-208ENST00000367256 GRIPAP1Q4V328 841 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 SPECC1LQ69YQ0 1117 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 IVLP07476 585 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 TIGD1Q96MW7 591 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 RPAP2Q8IXW5 612 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-208ENST00000367256 SCLT1Q96NL6 688 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 BCCIPQ9P287 314 aaKnown RBP eCLIP8.47□□□□□ -1.05
SYNE1-208ENST00000367256 GPATCH11Q8N954 259 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 PPM1FP49593 454 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-208ENST00000367256 DNA2P51530 1060 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 CBX1P83916 185 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 PPP1R1BQ9UD71 204 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-208ENST00000367256 TOP2BQ02880 1626 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 FGFR1OPO95684 399 aaKnown RBP8.47□□□□□ -1.05
SYNE1-208ENST00000367256 TOP1P11387 765 aaKnown RBP8.47□□□□□ -1.05
SYNE1-208ENST00000367256 EHBP1Q8NDI1 1231 aa8.47□□□□□ -1.05
SYNE1-208ENST00000367256 DDX19AQ9NUU7 478 aaKnown RBP8.46□□□□□ -1.05
SYNE1-208ENST00000367256 NLRP6P59044 892 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 NBPF1Q3BBV0 1214 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 CCDC171Q6TFL3 1326 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 C9orf84Q5VXU9 1444 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 CACNA2D4Q7Z3S7 1137 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 CEP112Q8N8E3 955 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 AIDAQ96BJ3 306 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 CFAP57Q96MR6 1250 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 UBA5Q9GZZ9 404 aa8.46□□□□□ -1.05
SYNE1-208ENST00000367256 EXOSC9Q06265 439 aaKnown RBP8.46□□□□□ -1.06
SYNE1-208ENST00000367256 COMMD10Q9Y6G5 202 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 C6orf163Q5TEZ5 329 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 KLHL10Q6JEL2 608 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 LARP1Q6PKG0 1096 aaKnown RBP8.46□□□□□ -1.06
SYNE1-208ENST00000367256 ZFP91Q96JP5 570 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-208ENST00000367256 PUS7Q96PZ0 661 aaKnown RBP8.46□□□□□ -1.06
SYNE1-208ENST00000367256 USP5P45974 858 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 BMS1Q14692 1282 aaKnown RBP8.46□□□□□ -1.06
SYNE1-208ENST00000367256 BBXQ8WY36 941 aaPredicted RBP8.46□□□□□ -1.06
SYNE1-208ENST00000367256 MAP3K1Q13233 1512 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 FERP16591 822 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 MAATS1Q7Z4T9 603 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 CTNNA2P26232 953 aa8.46□□□□□ -1.06
SYNE1-208ENST00000367256 CABP4P57796 275 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 C16orf45Q96MC5 204 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-208ENST00000367256 YEATS4O95619 227 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 ANKRD30BQ9BXX2 1392 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 RAB11FIP3O75154 756 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 KRT222Q8N1A0 295 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 PHF23Q9BUL5 403 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-208ENST00000367256 MYL6BP14649 208 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 IPO4Q8TEX9 1081 aaKnown RBP8.45□□□□□ -1.06
SYNE1-208ENST00000367256 ALDH1L2Q3SY69 923 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 CDCA7LQ96GN5 454 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 NAA15Q9BXJ9 866 aaKnown RBP8.45□□□□□ -1.06
SYNE1-208ENST00000367256 CLCN1P35523 988 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 STX1AQ16623 288 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 PYM1Q9BRP8 204 aaKnown RBP8.45□□□□□ -1.06
SYNE1-208ENST00000367256 U3KPZ7 1027 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-208ENST00000367256 ATAD2Q6PL18 1390 aa8.45□□□□□ -1.06
SYNE1-208ENST00000367256 SYNJ2O15056 1496 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 SRGAP3O43295 1099 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 BCAR3O75815 825 aa8.44□□□□□ -1.06
SYNE1-208ENST00000367256 RBM25P49756 843 aaKnown RBP8.44□□□□□ -1.06
SYNE1-208ENST00000367256 GTPBP4Q9BZE4 634 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms