RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CTNNA3Q9UI47 895 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 WDHD1O75717 1129 aaPredicted RBP13.79□□□□□ -0.2
SYNE1-204ENST00000367248 PPIP5K1Q6PFW1 1433 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 ATP5J2-PTCD1G3V325 749 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 DDB1Q16531 1140 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 RALGAPBQ86X10 1494 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 KRT18P05783 430 aaKnown RBP13.79□□□□□ -0.2
SYNE1-204ENST00000367248 ATP6V1AP38606 617 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 CEBPZQ03701 1054 aaKnown RBP13.79□□□□□ -0.2
SYNE1-204ENST00000367248 MBIPQ9NS73 344 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 AKAP2Q9Y2D5 859 aa13.79□□□□□ -0.2
SYNE1-204ENST00000367248 IFIT1P09914 478 aaKnown RBP13.79□□□□□ -0.2
SYNE1-204ENST00000367248 CAVIN4Q5BKX8 364 aa13.78□□□□□ -0.2
SYNE1-204ENST00000367248 EIF4G3O43432 1585 aaKnown RBP13.78□□□□□ -0.2
SYNE1-204ENST00000367248 A0A087WZG4 1122 aa13.78□□□□□ -0.2
SYNE1-204ENST00000367248 MX1P20591 662 aa13.78□□□□□ -0.2
SYNE1-204ENST00000367248 PIP4K2AP48426 406 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-204ENST00000367248 CDK5RAP3Q96JB5 506 aa13.78□□□□□ -0.2
SYNE1-204ENST00000367248 IL16Q14005 1332 aa13.78□□□□□ -0.2
SYNE1-204ENST00000367248 GLRX3O76003 335 aaKnown RBP13.78□□□□□ -0.2
SYNE1-204ENST00000367248 POLR3DP05423 398 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-204ENST00000367248 TESK2Q96S53 571 aa13.78□□□□□ -0.2
SYNE1-204ENST00000367248 RAB11FIP3O75154 756 aa13.78□□□□□ -0.2
SYNE1-204ENST00000367248 IFIT5Q13325 482 aaKnown RBP13.77□□□□□ -0.2
SYNE1-204ENST00000367248 SDF4Q9BRK5 362 aa13.77□□□□□ -0.2
SYNE1-204ENST00000367248 ANKRD1Q15327 319 aa13.77□□□□□ -0.2
SYNE1-204ENST00000367248 SASS6Q6UVJ0 657 aa13.77□□□□□ -0.2
SYNE1-204ENST00000367248 C16orf71Q8IYS4 520 aaPredicted RBP13.77□□□□□ -0.2
SYNE1-204ENST00000367248 DZIP1Q86YF9 867 aaKnown RBP13.77□□□□□ -0.21
SYNE1-204ENST00000367248 MINDY4BA8MYZ0 360 aa13.77□□□□□ -0.21
SYNE1-204ENST00000367248 CT47A1Q5JQC4 288 aaPredicted RBP13.77□□□□□ -0.21
SYNE1-204ENST00000367248 SNRPA1P09661 255 aaKnown RBP13.77□□□□□ -0.21
SYNE1-204ENST00000367248 BLOC1S2Q6QNY1 142 aa13.77□□□□□ -0.21
SYNE1-204ENST00000367248 ANXA1P04083 346 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 CWC27Q6UX04 472 aaKnown RBP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 BACH2Q9BYV9 841 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 NKTRP30414 1462 aaKnown RBP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 TRIM27P14373 513 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 EPS15P42566 896 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 TRIM22Q8IYM9 498 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 IPO7O95373 1038 aaKnown RBP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 NBPF6Q5VWK0 638 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 NBPF5PQ86XG9 351 aaPredicted RBP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 NBPF4Q96M43 638 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 RBM26Q5T8P6 1007 aaKnown RBP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 C20orf194Q5TEA3 1177 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 NBPF14Q5TI25 921 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 POLKQ9UBT6 870 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 ZCRB1Q8TBF4 217 aaKnown RBP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 PTPRCP08575 1304 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 TRMT1LQ7Z2T5 733 aaKnown RBP13.76□□□□□ -0.21
SYNE1-204ENST00000367248 ZRANB1Q9UGI0 708 aa13.76□□□□□ -0.21
SYNE1-204ENST00000367248 F8W031 263 aaPredicted RBP13.75□□□□□ -0.21
SYNE1-204ENST00000367248 AIDAQ96BJ3 306 aa13.75□□□□□ -0.21
SYNE1-204ENST00000367248 CCDC69A6NI79 296 aa13.75□□□□□ -0.21
SYNE1-204ENST00000367248 LRRFIP2Q9Y608 721 aaKnown RBP13.75□□□□□ -0.21
SYNE1-204ENST00000367248 KRT32Q14532 448 aa13.75□□□□□ -0.21
SYNE1-204ENST00000367248 DDX17Q92841 729 aaKnown RBP13.75□□□□□ -0.21
SYNE1-204ENST00000367248 NAP1L1P55209 391 aaKnown RBP13.75□□□□□ -0.21
SYNE1-204ENST00000367248 EIF4A2Q14240 407 aaKnown RBP13.75□□□□□ -0.21
SYNE1-204ENST00000367248 AEBP1Q8IUX7 1158 aa13.75□□□□□ -0.21
SYNE1-204ENST00000367248 POLD1P28340 1107 aa13.74□□□□□ -0.21
SYNE1-204ENST00000367248 SLC39A6Q13433 755 aa13.74□□□□□ -0.21
SYNE1-204ENST00000367248 ZNF76P36508 570 aa13.74□□□□□ -0.21
SYNE1-204ENST00000367248 SOGA3Q5TF21 947 aa13.74□□□□□ -0.21
SYNE1-204ENST00000367248 PI4KAP2A4QPH2 592 aa13.74□□□□□ -0.21
SYNE1-204ENST00000367248 DDX46Q7L014 1031 aaKnown RBP13.74□□□□□ -0.21
SYNE1-204ENST00000367248 PI4KAP1Q8N8J0 262 aa13.74□□□□□ -0.21
SYNE1-204ENST00000367248 LRRC59Q96AG4 307 aaKnown RBP13.74□□□□□ -0.21
SYNE1-204ENST00000367248 FLT4P35916 1363 aa13.74□□□□□ -0.21
SYNE1-204ENST00000367248 ANKRD18BA2A2Z9 1011 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 STK38Q15208 465 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 UBAC1Q9BSL1 405 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 ODF2Q5BJF6 829 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 BTG4Q9NY30 223 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 PIK3R4Q99570 1358 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 SSBP05455 408 aaKnown RBP eCLIP13.73□□□□□ -0.21
SYNE1-204ENST00000367248 ATP10AO60312 1499 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 MBD3O95983 291 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 GCP02774 474 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 JAKMIP1Q96N16 626 aaKnown RBP13.73□□□□□ -0.21
SYNE1-204ENST00000367248 ST5P78524 1137 aa13.73□□□□□ -0.21
SYNE1-204ENST00000367248 SMARCA5O60264 1052 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-204ENST00000367248 ZNF396Q96N95 335 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-204ENST00000367248 MKNK2Q9HBH9 465 aa13.72□□□□□ -0.21
SYNE1-204ENST00000367248 MAP3K2Q9Y2U5 619 aa13.72□□□□□ -0.21
SYNE1-204ENST00000367248 NPATQ14207 1427 aa13.72□□□□□ -0.21
SYNE1-204ENST00000367248 ZSCAN31Q96LW9 406 aaPredicted RBP13.72□□□□□ -0.21
SYNE1-204ENST00000367248 BOLA2Q9H3K6 86 aa13.72□□□□□ -0.21
SYNE1-204ENST00000367248 FIBPO43427 364 aa13.71□□□□□ -0.21
SYNE1-204ENST00000367248 AKAP4Q5JQC9 854 aa13.71□□□□□ -0.21
SYNE1-204ENST00000367248 PDRG1Q9NUG6 133 aa13.71□□□□□ -0.21
SYNE1-204ENST00000367248 MATR3P43243 847 aaKnown RBP eCLIP13.71□□□□□ -0.21
SYNE1-204ENST00000367248 NFKBIBQ15653 356 aa13.71□□□□□ -0.21
SYNE1-204ENST00000367248 UBE3BQ7Z3V4 1068 aa13.71□□□□□ -0.21
SYNE1-204ENST00000367248 SCLT1Q96NL6 688 aa13.71□□□□□ -0.21
SYNE1-204ENST00000367248 CCDC8Q9H0W5 538 aaPredicted RBP13.71□□□□□ -0.21
SYNE1-204ENST00000367248 YTHDC2Q9H6S0 1430 aaKnown RBP13.71□□□□□ -0.21
SYNE1-204ENST00000367248 MAPKBP1O60336 1514 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms