RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ADGRL1O94910 1474 aa22.91■■□□□ 1.26
CCDC88B-202ENST00000356786 ALDH1L2Q3SY69 923 aa22.91■■□□□ 1.26
CCDC88B-202ENST00000356786 ADAMTS12P58397 1594 aa22.91■■□□□ 1.26
CCDC88B-202ENST00000356786 CCDC43Q96MW1 224 aaKnown RBP22.91■■□□□ 1.26
CCDC88B-202ENST00000356786 HCLS1P14317 486 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-202ENST00000356786 C8orf34Q49A92 452 aa22.9■■□□□ 1.26
CCDC88B-202ENST00000356786 SYTL4Q96C24 671 aaPredicted RBP22.9■■□□□ 1.26
CCDC88B-202ENST00000356786 LUC7LQ9NQ29 371 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-202ENST00000356786 DHX37Q8IY37 1157 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-202ENST00000356786 ERLIN2O94905 339 aa22.9■■□□□ 1.26
CCDC88B-202ENST00000356786 STIM1Q13586 685 aa22.9■■□□□ 1.26
CCDC88B-202ENST00000356786 CCDC158Q5M9N0 1113 aa22.89■■□□□ 1.26
CCDC88B-202ENST00000356786 LIMCH1Q9UPQ0 1083 aa22.89■■□□□ 1.26
CCDC88B-202ENST00000356786 GOLGA6L7A0A1B0GV03 622 aa22.89■■□□□ 1.25
CCDC88B-202ENST00000356786 SH2B1Q9NRF2 756 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-202ENST00000356786 KIF21AQ7Z4S6 1674 aa22.89■■□□□ 1.25
CCDC88B-202ENST00000356786 LRSAM1Q6UWE0 723 aa22.89■■□□□ 1.25
CCDC88B-202ENST00000356786 NSD3Q9BZ95 1437 aa22.89■■□□□ 1.25
CCDC88B-202ENST00000356786 ZNF830Q96NB3 372 aaPredicted RBP22.88■■□□□ 1.25
CCDC88B-202ENST00000356786 CDK19Q9BWU1 502 aa22.88■■□□□ 1.25
CCDC88B-202ENST00000356786 IQCEQ6IPM2 695 aa22.88■■□□□ 1.25
CCDC88B-202ENST00000356786 PLEKHH1Q9ULM0 1364 aa22.88■■□□□ 1.25
CCDC88B-202ENST00000356786 RPRD2Q5VT52 1461 aaKnown RBP22.88■■□□□ 1.25
CCDC88B-202ENST00000356786 CDK5RAP3Q96JB5 506 aa22.88■■□□□ 1.25
CCDC88B-202ENST00000356786 NEMFO60524 1076 aa22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 UVSSAQ2YD98 709 aa22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 GLRX3O76003 335 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 ZKSCAN5Q9Y2L8 839 aa22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 RAB11FIP3O75154 756 aa22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 KIF4BQ2VIQ3 1234 aa22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 CCAR1Q8IX12 1150 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 KIF1BPQ96EK5 621 aa22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 LARP6Q9BRS8 491 aaKnown RBP22.87■■□□□ 1.25
CCDC88B-202ENST00000356786 NOLC1Q14978 699 aaKnown RBP eCLIP22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 JAKMIP3Q5VZ66 844 aa22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 ZNF165P49910 485 aa22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 PLEKHO1Q53GL0 409 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 RPGRIP1LQ68CZ1 1315 aa22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 TTC39AQ5SRH9 613 aa22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 TXNDC2Q86VQ3 553 aa22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 DDX19AQ9NUU7 478 aaKnown RBP22.86■■□□□ 1.25
CCDC88B-202ENST00000356786 TFIP11Q9UBB9 837 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-202ENST00000356786 FBXO3Q9UK99 471 aa22.85■■□□□ 1.25
CCDC88B-202ENST00000356786 TOP1P11387 765 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-202ENST00000356786 CDKL5O76039 1030 aa22.85■■□□□ 1.25
CCDC88B-202ENST00000356786 PCDHB15Q9Y5E8 787 aa22.84■■□□□ 1.25
CCDC88B-202ENST00000356786 RRS1Q15050 365 aaKnown RBP22.84■■□□□ 1.25
CCDC88B-202ENST00000356786 GPRASP1Q5JY77 1395 aa22.84■■□□□ 1.25
CCDC88B-202ENST00000356786 STX6O43752 255 aa22.84■■□□□ 1.25
CCDC88B-202ENST00000356786 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.84■■□□□ 1.257e-7■■■■■ 33
CCDC88B-202ENST00000356786 TAX1BP1Q86VP1 789 aa22.84■■□□□ 1.25
CCDC88B-202ENST00000356786 ABTB2Q8N961 1025 aa22.84■■□□□ 1.25
CCDC88B-202ENST00000356786 KIAA1328Q86T90 577 aa22.83■■□□□ 1.25
CCDC88B-202ENST00000356786 KIF5CO60282 957 aa22.83■■□□□ 1.25
CCDC88B-202ENST00000356786 BMS1Q14692 1282 aaKnown RBP22.83■■□□□ 1.25
CCDC88B-202ENST00000356786 FKBP4Q02790 459 aaKnown RBP eCLIP22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 CCDC148Q8NFR7 591 aa22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 NUP133Q8WUM0 1156 aa22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 CTNNA3Q9UI47 895 aa22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 SHTN1A0MZ66 631 aa22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 CCDC69A6NI79 296 aa22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 CASQ1P31415 396 aa22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 TANGO6Q9C0B7 1094 aa22.83■■□□□ 1.24
CCDC88B-202ENST00000356786 MAPKBP1O60336 1514 aa22.82■■□□□ 1.24
CCDC88B-202ENST00000356786 UBE2HP62256 183 aa22.82■■□□□ 1.24
CCDC88B-202ENST00000356786 CTAGE5O15320 804 aa22.82■■□□□ 1.24
CCDC88B-202ENST00000356786 TXLNBQ8N3L3 684 aa22.82■■□□□ 1.24
CCDC88B-202ENST00000356786 KIAA0556O60303 1618 aa22.82■■□□□ 1.24
CCDC88B-202ENST00000356786 EIF5P55010 431 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 GSDMDP57764 484 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 GIMAP6Q6P9H5 292 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 MIS18AQ9NYP9 233 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 DHX29Q7Z478 1369 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 TIGD1Q96MW7 591 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 ABCC11Q96J66 1382 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 FANCAO15360 1455 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 NEFHP12036 1026 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 KRT222Q8N1A0 295 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 PAXBP1Q9Y5B6 917 aa22.81■■□□□ 1.24
CCDC88B-202ENST00000356786 CEP135Q66GS9 1140 aa22.8■■□□□ 1.24
CCDC88B-202ENST00000356786 GIMAP7Q8NHV1 300 aa22.8■■□□□ 1.24
CCDC88B-202ENST00000356786 NOL7Q9UMY1 257 aaKnown RBP22.8■■□□□ 1.24
CCDC88B-202ENST00000356786 KRT18P05783 430 aaKnown RBP22.8■■□□□ 1.24
CCDC88B-202ENST00000356786 SNW1Q13573 536 aaKnown RBP22.8■■□□□ 1.24
CCDC88B-202ENST00000356786 TTC12Q9H892 705 aaPredicted RBP22.8■■□□□ 1.24
CCDC88B-202ENST00000356786 MAP9Q49MG5 647 aa22.79■■□□□ 1.24
CCDC88B-202ENST00000356786 NACAP1Q9BZK3 213 aa22.79■■□□□ 1.24
CCDC88B-202ENST00000356786 GUCY1B3Q02153 619 aa22.79■■□□□ 1.24
CCDC88B-202ENST00000356786 SAMD1Q6SPF0 538 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-202ENST00000356786 ZNF692Q9BU19 519 aaPredicted RBP22.79■■□□□ 1.24
CCDC88B-202ENST00000356786 IBSPP21815 317 aaPredicted RBP22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 PRIM1P49642 420 aaKnown RBP22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 RRAGDQ9NQL2 400 aaPredicted RBP22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 TMX3Q96JJ7 454 aa22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 CNNM1Q9NRU3 951 aa22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 KLHL10Q6JEL2 608 aa22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 ZNF530Q6P9A1 599 aaPredicted RBP22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 MCM10Q7L590 875 aa22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 TMC6Q7Z403 805 aa22.78■■□□□ 1.24
CCDC88B-202ENST00000356786 WDR62O43379 1518 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms