RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 SMARCA5O60264 1052 aaPredicted RBP27.49■■□□□ 1.99
NKX2-1-201ENST00000354822 SDSP20132 328 aa27.49■■□□□ 1.99
NKX2-1-201ENST00000354822 C1orf167Q5SNV9 1468 aa27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 TRPM3Q9HCF6 1732 aaPredicted RBP27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 NBPF6Q5VWK0 638 aa27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 USHBP1Q8N6Y0 703 aa27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 OTUD7AQ8TE49 926 aaPredicted RBP27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 NBPF4Q96M43 638 aa27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 SLIT3O75094 1523 aa27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 K7ELQ4 463 aaPredicted RBP27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 HOXB7P09629 217 aa27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 ATP8B2P98198 1209 aa27.48■■□□□ 1.99
NKX2-1-201ENST00000354822 APBB1O00213 710 aa27.47■■□□□ 1.99
NKX2-1-201ENST00000354822 RABEP1Q15276 862 aa27.46■■□□□ 1.99
NKX2-1-201ENST00000354822 HDGFL1Q5TGJ6 251 aa27.46■■□□□ 1.99
NKX2-1-201ENST00000354822 USP26Q9BXU7 913 aa27.46■■□□□ 1.99
NKX2-1-201ENST00000354822 NECTIN2Q92692 538 aa27.45■■□□□ 1.98
NKX2-1-201ENST00000354822 PLEKHO1Q53GL0 409 aaPredicted RBP27.44■■□□□ 1.98
NKX2-1-201ENST00000354822 HSP90AA1P07900 732 aaKnown RBP27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 PDE1AP54750 535 aa27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 XPCQ01831 940 aaPredicted RBP27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 AMOTQ4VCS5 1084 aa27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 AKAP4Q5JQC9 854 aa27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 KRT28Q7Z3Y7 464 aa27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 DDX11L8A8MPP1 907 aa27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 REC8O95072 547 aa27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 LRRCC1Q9C099 1032 aa27.43■■□□□ 1.98
NKX2-1-201ENST00000354822 N4BP2Q86UW6 1770 aaPredicted RBP27.42■■□□□ 1.98
NKX2-1-201ENST00000354822 GCP02774 474 aa27.42■■□□□ 1.98
NKX2-1-201ENST00000354822 EIF4A1P60842 406 aaKnown RBP27.41■■□□□ 1.98
NKX2-1-201ENST00000354822 MED1Q15648 1581 aaPredicted RBP27.41■■□□□ 1.98
NKX2-1-201ENST00000354822 STRCP1A6NGW2 1772 aa27.41■■□□□ 1.98
NKX2-1-201ENST00000354822 ARHGEF25Q86VW2 580 aa27.41■■□□□ 1.98
NKX2-1-201ENST00000354822 ZBTB7CA1YPR0 619 aa27.4■■□□□ 1.98
NKX2-1-201ENST00000354822 MST1RQ04912 1400 aa27.39■■□□□ 1.98
NKX2-1-201ENST00000354822 USP44Q9H0E7 712 aa27.39■■□□□ 1.98
NKX2-1-201ENST00000354822 EXOC6BQ9Y2D4 811 aa27.39■■□□□ 1.98
NKX2-1-201ENST00000354822 UBTFL1P0CB47 393 aaPredicted RBP27.39■■□□□ 1.97
NKX2-1-201ENST00000354822 RBM42Q9BTD8 480 aaKnown RBP27.39■■□□□ 1.97
NKX2-1-201ENST00000354822 TMEM94Q12767 1356 aa27.39■■□□□ 1.97
NKX2-1-201ENST00000354822 DCCP43146 1447 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 RGPD2P0DJD1 1756 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 CD2BP2O95400 341 aaKnown RBP27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 TEFQ10587 303 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 LGR6Q9HBX8 967 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 IBTKQ9P2D0 1353 aaPredicted RBP27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 ERC2O15083 957 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 ATF3P18847 181 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 RAB3GAP1Q15042 981 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 L1TD1Q5T7N2 865 aaKnown RBP27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 SRCIN1Q9C0H9 1055 aa27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 LRRFIP2Q9Y608 721 aaKnown RBP27.38■■□□□ 1.97
NKX2-1-201ENST00000354822 PNMA6EA0A0J9YXQ4 647 aa27.37■■□□□ 1.97
NKX2-1-201ENST00000354822 LMOD2Q6P5Q4 547 aa27.37■■□□□ 1.97
NKX2-1-201ENST00000354822 ZNF530Q6P9A1 599 aaPredicted RBP27.37■■□□□ 1.97
NKX2-1-201ENST00000354822 GBP4Q96PP9 640 aa27.37■■□□□ 1.97
NKX2-1-201ENST00000354822 SALL3Q9BXA9 1300 aa27.37■■□□□ 1.97
NKX2-1-201ENST00000354822 TRAK2O60296 914 aa27.36■■□□□ 1.97
NKX2-1-201ENST00000354822 PTMSP20962 102 aa27.36■■□□□ 1.97
NKX2-1-201ENST00000354822 NCAPD2Q15021 1401 aa27.36■■□□□ 1.97
NKX2-1-201ENST00000354822 LMO7Q8WWI1 1683 aa27.36■■□□□ 1.97
NKX2-1-201ENST00000354822 ALS2Q96Q42 1657 aa27.35■■□□□ 1.97
NKX2-1-201ENST00000354822 PHAXQ9H814 394 aaKnown RBP27.35■■□□□ 1.97
NKX2-1-201ENST00000354822 BTBD11A6QL63 1104 aa27.35■■□□□ 1.97
NKX2-1-201ENST00000354822 OVOS2A0A0G2JMS6 1433 aa27.34■■□□□ 1.97
NKX2-1-201ENST00000354822 TNPO1Q92973 898 aaKnown RBP27.34■■□□□ 1.97
NKX2-1-201ENST00000354822 STAP2Q9UGK3 403 aa27.34■■□□□ 1.97
NKX2-1-201ENST00000354822 KDM3BQ7LBC6 1761 aa27.34■■□□□ 1.97
NKX2-1-201ENST00000354822 EIF2S2P20042 333 aaKnown RBP27.33■■□□□ 1.97
NKX2-1-201ENST00000354822 MX1P20591 662 aa27.33■■□□□ 1.97
NKX2-1-201ENST00000354822 C1orf141Q5JVX7 400 aa27.33■■□□□ 1.97
NKX2-1-201ENST00000354822 SSH3Q8TE77 659 aa27.33■■□□□ 1.97
NKX2-1-201ENST00000354822 LRRC59Q96AG4 307 aaKnown RBP27.33■■□□□ 1.97
NKX2-1-201ENST00000354822 RAB11FIP3O75154 756 aa27.33■■□□□ 1.97
NKX2-1-201ENST00000354822 AOX1Q06278 1338 aa27.31■■□□□ 1.96
NKX2-1-201ENST00000354822 ST18O60284 1047 aa27.31■■□□□ 1.96
NKX2-1-201ENST00000354822 RNMTO43148 476 aaKnown RBP27.31■■□□□ 1.96
NKX2-1-201ENST00000354822 ANKRD24Q8TF21 1146 aa27.31■■□□□ 1.96
NKX2-1-201ENST00000354822 BRPF3Q9ULD4 1205 aa27.31■■□□□ 1.96
NKX2-1-201ENST00000354822 IL27Q8NEV9 243 aa27.3■■□□□ 1.96
NKX2-1-201ENST00000354822 CAMTA1Q9Y6Y1 1673 aa27.3■■□□□ 1.96
NKX2-1-201ENST00000354822 DNAAF4Q8WXU2 420 aa27.29■■□□□ 1.96
NKX2-1-201ENST00000354822 CHPF2Q9P2E5 772 aa27.29■■□□□ 1.96
NKX2-1-201ENST00000354822 MPRIPQ6WCQ1 1025 aa27.29■■□□□ 1.96
NKX2-1-201ENST00000354822 PLEKHG5O94827 1062 aa27.28■■□□□ 1.96
NKX2-1-201ENST00000354822 POLA2Q14181 598 aa27.28■■□□□ 1.96
NKX2-1-201ENST00000354822 SKOR2Q2VWA4 1001 aaPredicted RBP27.28■■□□□ 1.96
NKX2-1-201ENST00000354822 CADPS2Q86UW7 1296 aa27.28■■□□□ 1.96
NKX2-1-201ENST00000354822 DBF4Q9UBU7 674 aaPredicted RBP27.28■■□□□ 1.96
NKX2-1-201ENST00000354822 HSPA2P54652 639 aa27.27■■□□□ 1.96
NKX2-1-201ENST00000354822 BEND3Q5T5X7 828 aa27.27■■□□□ 1.96
NKX2-1-201ENST00000354822 CLEC17AQ6ZS10 378 aa27.26■■□□□ 1.96
NKX2-1-201ENST00000354822 PPP1R42Q7Z4L9 355 aa27.26■■□□□ 1.95
NKX2-1-201ENST00000354822 PI4KAP2A4QPH2 592 aa27.25■■□□□ 1.95
NKX2-1-201ENST00000354822 KCNQ3O43525 872 aa27.25■■□□□ 1.95
NKX2-1-201ENST00000354822 PI4KAP1Q8N8J0 262 aa27.25■■□□□ 1.95
NKX2-1-201ENST00000354822 CWC22Q9HCG8 908 aaKnown RBP27.25■■□□□ 1.95
NKX2-1-201ENST00000354822 GOLGA6L3A6NEY3 463 aa27.25■■□□□ 1.95
NKX2-1-201ENST00000354822 ESYT1Q9BSJ8 1104 aa27.25■■□□□ 1.95
NKX2-1-201ENST00000354822 FOXD4L1Q9NU39 408 aa27.25■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms