RNA–Protein interactions for RNA: ENST00000344824.10

TPM4-202, Transcript of tropomyosin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TPM4, Length 1,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-202ENST00000344824 U2AF1Q01081 240 aaKnown RBP eCLIP18.38■□□□□ 0.53
TPM4-202ENST00000344824 MTHFSDQ2M296 383 aaKnown RBP18.37■□□□□ 0.53
TPM4-202ENST00000344824 AKAP4Q5JQC9 854 aa18.37■□□□□ 0.53
TPM4-202ENST00000344824 SPON1Q9HCB6 807 aa18.37■□□□□ 0.53
TPM4-202ENST00000344824 TFCP2L1Q9NZI6 479 aa18.37■□□□□ 0.53
TPM4-202ENST00000344824 PPP1R1BQ9UD71 204 aaPredicted RBP18.37■□□□□ 0.53
TPM4-202ENST00000344824 ASAP1Q9ULH1 1129 aa18.37■□□□□ 0.53
TPM4-202ENST00000344824 ERVV-2B6SEH9 535 aa18.36■□□□□ 0.53
TPM4-202ENST00000344824 PRKAR2BP31323 418 aa18.36■□□□□ 0.53
TPM4-202ENST00000344824 UBR3Q6ZT12 1888 aa18.36■□□□□ 0.53
TPM4-202ENST00000344824 AKT1S1Q96B36 256 aa18.35■□□□□ 0.53
TPM4-202ENST00000344824 RBM42Q9BTD8 480 aaKnown RBP18.35■□□□□ 0.53
TPM4-202ENST00000344824 ATF5Q9Y2D1 282 aaPredicted RBP18.35■□□□□ 0.53
TPM4-202ENST00000344824 DLG5Q8TDM6 1919 aa18.34■□□□□ 0.53
TPM4-202ENST00000344824 COL5A3P25940 1745 aaPredicted RBP18.34■□□□□ 0.53
TPM4-202ENST00000344824 ADAMTS7Q9UKP4 1686 aa18.33■□□□□ 0.53
TPM4-202ENST00000344824 LOC102724428A0A0B4J2F2 783 aa18.33■□□□□ 0.53
TPM4-202ENST00000344824 SIK1P57059 783 aa18.33■□□□□ 0.53
TPM4-202ENST00000344824 ATG3Q9NT62 314 aa18.33■□□□□ 0.53
TPM4-202ENST00000344824 MAP3K5Q99683 1374 aa18.33■□□□□ 0.52
TPM4-202ENST00000344824 ATP6V1AP38606 617 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 GAS2L2Q8NHY3 880 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 AK7Q96M32 723 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 RSPH6AQ9H0K4 717 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 MRC1P22897 1456 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 PNPLA7Q6ZV29 1317 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 NFATC2IPQ8NCF5 419 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 LGR6Q9HBX8 967 aa18.32■□□□□ 0.52
TPM4-202ENST00000344824 TJP1Q07157 1748 aa18.31■□□□□ 0.52
TPM4-202ENST00000344824 SIPA1L3O60292 1781 aaPredicted RBP18.31■□□□□ 0.52
TPM4-202ENST00000344824 ZNF831Q5JPB2 1677 aa18.31■□□□□ 0.52
TPM4-202ENST00000344824 RNMTO43148 476 aaKnown RBP18.31■□□□□ 0.52
TPM4-202ENST00000344824 PHF14O94880 888 aa18.3■□□□□ 0.52
TPM4-202ENST00000344824 MTFR1LQ9H019 292 aa18.3■□□□□ 0.52
TPM4-202ENST00000344824 SLC52A2Q9HAB3 445 aa18.3■□□□□ 0.52
TPM4-202ENST00000344824 PTCD1O75127 700 aaKnown RBP18.29■□□□□ 0.52
TPM4-202ENST00000344824 LINC00116Q8NCU8 138 aa18.29■□□□□ 0.52
TPM4-202ENST00000344824 GNAT3A8MTJ3 354 aa18.28■□□□□ 0.52
TPM4-202ENST00000344824 NEFMP07197 916 aa18.28■□□□□ 0.52
TPM4-202ENST00000344824 ITPK1Q13572 414 aa18.28■□□□□ 0.52
TPM4-202ENST00000344824 FAM9BQ8IZU0 186 aa18.28■□□□□ 0.52
TPM4-202ENST00000344824 PHACTR3Q96KR7 559 aa18.28■□□□□ 0.52
TPM4-202ENST00000344824 UBR2Q8IWV8 1755 aa18.27■□□□□ 0.52
TPM4-202ENST00000344824 HMGB2P26583 209 aaKnown RBP18.27■□□□□ 0.52
TPM4-202ENST00000344824 MYH14Q7Z406 1995 aaKnown RBP18.27■□□□□ 0.52
TPM4-202ENST00000344824 GNPATO15228 680 aa18.26■□□□□ 0.51
TPM4-202ENST00000344824 FCHSD2O94868 740 aa18.26■□□□□ 0.51
TPM4-202ENST00000344824 TEFQ10587 303 aa18.26■□□□□ 0.51
TPM4-202ENST00000344824 SLC39A6Q13433 755 aa18.25■□□□□ 0.51
TPM4-202ENST00000344824 COL24A1Q17RW2 1714 aa18.25■□□□□ 0.51
TPM4-202ENST00000344824 MSL1Q68DK7 614 aa18.25■□□□□ 0.51
TPM4-202ENST00000344824 SMIM5Q71RC9 77 aa18.25■□□□□ 0.51
TPM4-202ENST00000344824 COL23A1Q86Y22 540 aaPredicted RBP18.25■□□□□ 0.51
TPM4-202ENST00000344824 KLHL34Q8N239 644 aa18.25■□□□□ 0.51
TPM4-202ENST00000344824 CICQ96RK0 1608 aaPredicted RBP18.25■□□□□ 0.51
TPM4-202ENST00000344824 C4AP0C0L4 1744 aa18.25■□□□□ 0.51
TPM4-202ENST00000344824 YTHDC1Q96MU7 727 aaKnown RBP18.24■□□□□ 0.51
TPM4-202ENST00000344824 SLC4A9Q96Q91 983 aa18.24■□□□□ 0.51
TPM4-202ENST00000344824 MAPK8IP3Q9UPT6 1336 aa18.24■□□□□ 0.51
TPM4-202ENST00000344824 PTGER2P43116 358 aa18.23■□□□□ 0.51
TPM4-202ENST00000344824 RTF1Q92541 710 aaKnown RBP18.23■□□□□ 0.51
TPM4-202ENST00000344824 KCPQ6ZWJ8 1503 aa18.23■□□□□ 0.51
TPM4-202ENST00000344824 POLD1P28340 1107 aa18.23■□□□□ 0.51
TPM4-202ENST00000344824 TTC5Q8N0Z6 440 aa18.23■□□□□ 0.51
TPM4-202ENST00000344824 SLC16A10Q8TF71 515 aa18.23■□□□□ 0.51
TPM4-202ENST00000344824 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.22■□□□□ 0.51
TPM4-202ENST00000344824 WDR43Q15061 677 aaKnown RBP eCLIP18.22■□□□□ 0.511e-6■□□□□ 11.1
TPM4-202ENST00000344824 AMIGO3Q86WK7 504 aa18.22■□□□□ 0.51
TPM4-202ENST00000344824 FLAD1Q8NFF5 587 aa18.22■□□□□ 0.51
TPM4-202ENST00000344824 PNISRQ8TF01 805 aaKnown RBP18.22■□□□□ 0.51
TPM4-202ENST00000344824 MCM10Q7L590 875 aa18.21■□□□□ 0.51
TPM4-202ENST00000344824 IL17REQ8NFR9 667 aa18.21■□□□□ 0.51
TPM4-202ENST00000344824 SSFA2P28290 1259 aa18.2■□□□□ 0.5
TPM4-202ENST00000344824 ARXQ96QS3 562 aa18.2■□□□□ 0.5
TPM4-202ENST00000344824 DCTN1Q14203 1278 aa18.19■□□□□ 0.5
TPM4-202ENST00000344824 RTCBQ9Y3I0 505 aaKnown RBP18.19■□□□□ 0.5
TPM4-202ENST00000344824 CNTNAP4Q9C0A0 1308 aa18.18■□□□□ 0.5
TPM4-202ENST00000344824 CRKLP46109 303 aaKnown RBP18.18■□□□□ 0.5
TPM4-202ENST00000344824 DNAJC10Q8IXB1 793 aa18.18■□□□□ 0.5
TPM4-202ENST00000344824 SGIP1Q9BQI5 828 aa18.18■□□□□ 0.5
TPM4-202ENST00000344824 CEMIPQ8WUJ3 1361 aa18.18■□□□□ 0.5
TPM4-202ENST00000344824 FHDC1Q9C0D6 1143 aaPredicted RBP18.17■□□□□ 0.5
TPM4-202ENST00000344824 PNNQ9H307 717 aaKnown RBP18.17■□□□□ 0.5
TPM4-202ENST00000344824 BTBD11A6QL63 1104 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 CCDC146Q8IYE0 955 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 PLEKHF1Q96S99 279 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 ADAMTS8Q9UP79 889 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 KDM3BQ7LBC6 1761 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 NFE2L2Q16236 605 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 TRAPPC3LQ5T215 181 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 ZNF790Q6PG37 636 aa18.15■□□□□ 0.5
TPM4-202ENST00000344824 SENP3-EIF4A1A0A087X0R7 540 aa18.14■□□□□ 0.49
TPM4-202ENST00000344824 RC3H1Q5TC82 1133 aaKnown RBP18.14■□□□□ 0.49
TPM4-202ENST00000344824 RPS6KA4O75676 772 aa18.13■□□□□ 0.49
TPM4-202ENST00000344824 RFC4P35249 363 aa18.13■□□□□ 0.49
TPM4-202ENST00000344824 PPP4R3CPQ6ZMV5 832 aa18.13■□□□□ 0.49
TPM4-202ENST00000344824 CCDC87Q9NVE4 849 aa18.13■□□□□ 0.49
TPM4-202ENST00000344824 LAMB4A4D0S4 1761 aa18.12■□□□□ 0.49
TPM4-202ENST00000344824 HEG1Q9ULI3 1381 aa18.12■□□□□ 0.49
TPM4-202ENST00000344824 KCNQ3O43525 872 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms