RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 HSP90AB1P08238 724 aaKnown RBP23.96■■□□□ 1.43
COL9A3-201ENST00000343916 HDGFL1Q5TGJ6 251 aa23.96■■□□□ 1.43
COL9A3-201ENST00000343916 LMOD2Q6P5Q4 547 aa23.96■■□□□ 1.43
COL9A3-201ENST00000343916 PHAXQ9H814 394 aaKnown RBP23.96■■□□□ 1.43
COL9A3-201ENST00000343916 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.95■■□□□ 1.43
COL9A3-201ENST00000343916 NCOA3Q9Y6Q9 1424 aa23.95■■□□□ 1.43
COL9A3-201ENST00000343916 PNMA6EA0A0J9YXQ4 647 aa23.95■■□□□ 1.42
COL9A3-201ENST00000343916 FOXD4L1Q9NU39 408 aa23.94■■□□□ 1.42
COL9A3-201ENST00000343916 EIF2S2P20042 333 aaKnown RBP23.94■■□□□ 1.42
COL9A3-201ENST00000343916 MCM4P33991 863 aa23.94■■□□□ 1.42
COL9A3-201ENST00000343916 KCNH5Q8NCM2 988 aa23.94■■□□□ 1.42
COL9A3-201ENST00000343916 CEMIPQ8WUJ3 1361 aa23.94■■□□□ 1.42
COL9A3-201ENST00000343916 RGPD2P0DJD1 1756 aa23.93■■□□□ 1.42
COL9A3-201ENST00000343916 DDIT3P35638 169 aa23.93■■□□□ 1.42
COL9A3-201ENST00000343916 TSHZ3Q63HK5 1081 aa23.93■■□□□ 1.42
COL9A3-201ENST00000343916 BABAM1Q9NWV8 329 aa23.93■■□□□ 1.42
COL9A3-201ENST00000343916 KCNQ3O43525 872 aa23.92■■□□□ 1.42
COL9A3-201ENST00000343916 GCP02774 474 aa23.92■■□□□ 1.42
COL9A3-201ENST00000343916 GNAI3P08754 354 aa23.92■■□□□ 1.42
COL9A3-201ENST00000343916 LRRFIP2Q9Y608 721 aaKnown RBP23.92■■□□□ 1.42
COL9A3-201ENST00000343916 PDE1AP54750 535 aa23.9■■□□□ 1.42
COL9A3-201ENST00000343916 MPRIPQ6WCQ1 1025 aa23.9■■□□□ 1.42
COL9A3-201ENST00000343916 USP26Q9BXU7 913 aa23.9■■□□□ 1.42
COL9A3-201ENST00000343916 K7ELQ4 463 aaPredicted RBP23.9■■□□□ 1.42
COL9A3-201ENST00000343916 HSP90AA1P07900 732 aaKnown RBP23.9■■□□□ 1.42
COL9A3-201ENST00000343916 USP44Q9H0E7 712 aa23.9■■□□□ 1.42
COL9A3-201ENST00000343916 EIF4A1P60842 406 aaKnown RBP23.89■■□□□ 1.42
COL9A3-201ENST00000343916 ZNF530Q6P9A1 599 aaPredicted RBP23.89■■□□□ 1.42
COL9A3-201ENST00000343916 SOS1Q07889 1333 aaPredicted RBP23.89■■□□□ 1.41
COL9A3-201ENST00000343916 CACNA1FO60840 1977 aa23.88■■□□□ 1.41
COL9A3-201ENST00000343916 ATP8B2P98198 1209 aa23.88■■□□□ 1.41
COL9A3-201ENST00000343916 ARHGEF25Q86VW2 580 aa23.87■■□□□ 1.41
COL9A3-201ENST00000343916 CHPF2Q9P2E5 772 aa23.87■■□□□ 1.41
COL9A3-201ENST00000343916 ANXA1P04083 346 aa23.87■■□□□ 1.41
COL9A3-201ENST00000343916 LRRCC1Q9C099 1032 aa23.87■■□□□ 1.41
COL9A3-201ENST00000343916 TEFQ10587 303 aa23.86■■□□□ 1.41
COL9A3-201ENST00000343916 CASC1Q6TDU7 716 aa23.86■■□□□ 1.41
COL9A3-201ENST00000343916 UBTFL1P0CB47 393 aaPredicted RBP23.86■■□□□ 1.41
COL9A3-201ENST00000343916 OSBPL3Q9H4L5 887 aa23.86■■□□□ 1.41
COL9A3-201ENST00000343916 GZF1Q9H116 711 aaPredicted RBP23.85■■□□□ 1.41
COL9A3-201ENST00000343916 AXIN2Q9Y2T1 843 aa23.85■■□□□ 1.41
COL9A3-201ENST00000343916 BTBD11A6QL63 1104 aa23.85■■□□□ 1.41
COL9A3-201ENST00000343916 AKAP4Q5JQC9 854 aa23.85■■□□□ 1.41
COL9A3-201ENST00000343916 MED1Q15648 1581 aaPredicted RBP23.84■■□□□ 1.41
COL9A3-201ENST00000343916 PXDNQ92626 1479 aa23.84■■□□□ 1.41
COL9A3-201ENST00000343916 PLEKHO1Q53GL0 409 aaPredicted RBP23.84■■□□□ 1.41
COL9A3-201ENST00000343916 ANKRD24Q8TF21 1146 aa23.84■■□□□ 1.41
COL9A3-201ENST00000343916 TNPO1Q92973 898 aaKnown RBP23.84■■□□□ 1.41
COL9A3-201ENST00000343916 IBTKQ9P2D0 1353 aaPredicted RBP23.83■■□□□ 1.41
COL9A3-201ENST00000343916 PROSER2Q86WR7 435 aaPredicted RBP23.83■■□□□ 1.41
COL9A3-201ENST00000343916 SALL3Q9BXA9 1300 aa23.83■■□□□ 1.41
COL9A3-201ENST00000343916 RABEP1Q15276 862 aa23.82■■□□□ 1.4
COL9A3-201ENST00000343916 MX1P20591 662 aa23.82■■□□□ 1.4
COL9A3-201ENST00000343916 SRCIN1Q9C0H9 1055 aa23.82■■□□□ 1.4
COL9A3-201ENST00000343916 PXDNLA1KZ92 1463 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 PI4KAP2A4QPH2 592 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 TRAK2O60296 914 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 KRT28Q7Z3Y7 464 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 PI4KAP1Q8N8J0 262 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 ARXQ96QS3 562 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 KDM4FA0A1W2PPD8 638 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 EIF5BO60841 1220 aaKnown RBP23.81■■□□□ 1.4
COL9A3-201ENST00000343916 NBPF7P0C2Y1 421 aaPredicted RBP23.81■■□□□ 1.4
COL9A3-201ENST00000343916 C1orf141Q5JVX7 400 aa23.81■■□□□ 1.4
COL9A3-201ENST00000343916 PHRF1Q9P1Y6 1649 aaKnown RBP23.8■■□□□ 1.4
COL9A3-201ENST00000343916 RNMTO43148 476 aaKnown RBP23.8■■□□□ 1.4
COL9A3-201ENST00000343916 IL1RAPL2Q9NP60 686 aa23.8■■□□□ 1.4
COL9A3-201ENST00000343916 CIZ1Q9ULV3 898 aaPredicted RBP23.8■■□□□ 1.4
COL9A3-201ENST00000343916 ERC2O15083 957 aa23.79■■□□□ 1.4
COL9A3-201ENST00000343916 RAB3GAP1Q15042 981 aa23.79■■□□□ 1.4
COL9A3-201ENST00000343916 KDM3BQ7LBC6 1761 aa23.79■■□□□ 1.4
COL9A3-201ENST00000343916 REC8O95072 547 aa23.79■■□□□ 1.4
COL9A3-201ENST00000343916 AMOTQ4VCS5 1084 aa23.79■■□□□ 1.4
COL9A3-201ENST00000343916 HSPA2P54652 639 aa23.78■■□□□ 1.4
COL9A3-201ENST00000343916 PPP1R42Q7Z4L9 355 aa23.78■■□□□ 1.4
COL9A3-201ENST00000343916 ZC3H6P61129 1189 aaKnown RBP23.78■■□□□ 1.4
COL9A3-201ENST00000343916 SLIT3O75094 1523 aa23.78■■□□□ 1.4
COL9A3-201ENST00000343916 LMO7Q8WWI1 1683 aa23.78■■□□□ 1.4
COL9A3-201ENST00000343916 N4BP2Q86UW6 1770 aaPredicted RBP23.78■■□□□ 1.4
COL9A3-201ENST00000343916 HOXB7P09629 217 aa23.77■■□□□ 1.4
COL9A3-201ENST00000343916 DNAAF4Q8WXU2 420 aa23.77■■□□□ 1.4
COL9A3-201ENST00000343916 PRAMEF22A3QJZ6 481 aa23.77■■□□□ 1.4
COL9A3-201ENST00000343916 BEND3Q5T5X7 828 aa23.77■■□□□ 1.4
COL9A3-201ENST00000343916 SSH3Q8TE77 659 aa23.77■■□□□ 1.4
COL9A3-201ENST00000343916 RILPL2Q969X0 211 aa23.77■■□□□ 1.4
COL9A3-201ENST00000343916 TRIM6-TRIM34B2RNG4 842 aa23.76■■□□□ 1.39
COL9A3-201ENST00000343916 DDX11L8A8MPP1 907 aa23.76■■□□□ 1.39
COL9A3-201ENST00000343916 DDX17Q92841 729 aaKnown RBP23.76■■□□□ 1.39
COL9A3-201ENST00000343916 SURF6O75683 361 aaKnown RBP23.75■■□□□ 1.39
COL9A3-201ENST00000343916 PRKCSHP14314 528 aaPredicted RBP23.75■■□□□ 1.39
COL9A3-201ENST00000343916 UNC5CLQ8IV45 518 aa23.75■■□□□ 1.39
COL9A3-201ENST00000343916 C1orf167Q5SNV9 1468 aa23.74■■□□□ 1.39
COL9A3-201ENST00000343916 SRGAP3O43295 1099 aa23.74■■□□□ 1.39
COL9A3-201ENST00000343916 PROSER3Q2NL68 480 aa23.74■■□□□ 1.39
COL9A3-201ENST00000343916 NUTM1Q86Y26 1132 aa23.74■■□□□ 1.39
COL9A3-201ENST00000343916 SSFA2P28290 1259 aa23.74■■□□□ 1.39
COL9A3-201ENST00000343916 ADCY9O60503 1353 aa23.74■■□□□ 1.39
COL9A3-201ENST00000343916 NCAPD2Q15021 1401 aa23.73■■□□□ 1.39
COL9A3-201ENST00000343916 C19orf44Q9H6X5 657 aa23.73■■□□□ 1.39
COL9A3-201ENST00000343916 TRPM3Q9HCF6 1732 aaPredicted RBP23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms