RNA–Protein interactions for RNA: ENST00000338468.7

PRKN-201, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 1,276 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-201ENST00000338468 C1orf141Q5JVX7 400 aa20.52■□□□□ 0.88
PRKN-201ENST00000338468 SMARCC1Q92922 1105 aaPredicted RBP20.52■□□□□ 0.88
PRKN-201ENST00000338468 TUBGCP6Q96RT7 1819 aa20.52■□□□□ 0.88
PRKN-201ENST00000338468 C5P01031 1676 aa20.51■□□□□ 0.87
PRKN-201ENST00000338468 GIGYF1O75420 1035 aaPredicted RBP20.51■□□□□ 0.87
PRKN-201ENST00000338468 AKAP4Q5JQC9 854 aa20.51■□□□□ 0.87
PRKN-201ENST00000338468 PELP1Q8IZL8 1130 aaKnown RBP20.51■□□□□ 0.87
PRKN-201ENST00000338468 ATG3Q9NT62 314 aa20.51■□□□□ 0.87
PRKN-201ENST00000338468 SCN11AQ9UI33 1791 aa20.51■□□□□ 0.87
PRKN-201ENST00000338468 TAF1LQ8IZX4 1826 aa20.5■□□□□ 0.87
PRKN-201ENST00000338468 PNPLA7Q6ZV29 1317 aa20.5■□□□□ 0.87
PRKN-201ENST00000338468 COL24A1Q17RW2 1714 aa20.5■□□□□ 0.87
PRKN-201ENST00000338468 ADAMTS7Q9UKP4 1686 aa20.49■□□□□ 0.87
PRKN-201ENST00000338468 RSPH6AQ9H0K4 717 aa20.49■□□□□ 0.87
PRKN-201ENST00000338468 TFCP2L1Q9NZI6 479 aa20.49■□□□□ 0.87
PRKN-201ENST00000338468 LOC102724428A0A0B4J2F2 783 aa20.48■□□□□ 0.87
PRKN-201ENST00000338468 SIK1P57059 783 aa20.48■□□□□ 0.87
PRKN-201ENST00000338468 LGR6Q9HBX8 967 aa20.48■□□□□ 0.87
PRKN-201ENST00000338468 CABP4P57796 275 aa20.47■□□□□ 0.87
PRKN-201ENST00000338468 NFATC2IPQ8NCF5 419 aa20.46■□□□□ 0.87
PRKN-201ENST00000338468 PHACTR3Q96KR7 559 aa20.46■□□□□ 0.87
PRKN-201ENST00000338468 SLC4A9Q96Q91 983 aa20.46■□□□□ 0.87
PRKN-201ENST00000338468 NUDCQ9Y266 331 aa20.46■□□□□ 0.87
PRKN-201ENST00000338468 MRC1P22897 1456 aa20.45■□□□□ 0.86
PRKN-201ENST00000338468 C4BP0C0L5 1744 aa20.45■□□□□ 0.86
PRKN-201ENST00000338468 RNMTO43148 476 aaKnown RBP20.45■□□□□ 0.86
PRKN-201ENST00000338468 U2AF1L5P0DN76 240 aaPredicted RBP20.45■□□□□ 0.86
PRKN-201ENST00000338468 PRKAR2BP31323 418 aa20.45■□□□□ 0.86
PRKN-201ENST00000338468 U2AF1Q01081 240 aaKnown RBP eCLIP20.45■□□□□ 0.86
PRKN-201ENST00000338468 ITPK1Q13572 414 aa20.45■□□□□ 0.86
PRKN-201ENST00000338468 RALBP1Q15311 655 aa20.45■□□□□ 0.86
PRKN-201ENST00000338468 VIRMAQ69YN4 1812 aaKnown RBP20.45■□□□□ 0.86
PRKN-201ENST00000338468 LINC00116Q8NCU8 138 aa20.44■□□□□ 0.86
PRKN-201ENST00000338468 NLGN2Q8NFZ4 835 aa20.44■□□□□ 0.86
PRKN-201ENST00000338468 ZNF831Q5JPB2 1677 aa20.43■□□□□ 0.86
PRKN-201ENST00000338468 AMIGO3Q86WK7 504 aa20.43■□□□□ 0.86
PRKN-201ENST00000338468 SLC52A2Q9HAB3 445 aa20.43■□□□□ 0.86
PRKN-201ENST00000338468 GRIN3BO60391 1043 aa20.41■□□□□ 0.86
PRKN-201ENST00000338468 FCHSD2O94868 740 aa20.41■□□□□ 0.86
PRKN-201ENST00000338468 ATP6V1AP38606 617 aa20.41■□□□□ 0.86
PRKN-201ENST00000338468 COL23A1Q86Y22 540 aaPredicted RBP20.41■□□□□ 0.86
PRKN-201ENST00000338468 GAS2L2Q8NHY3 880 aa20.41■□□□□ 0.86
PRKN-201ENST00000338468 UBR3Q6ZT12 1888 aa20.4■□□□□ 0.86
PRKN-201ENST00000338468 IL17REQ8NFR9 667 aa20.4■□□□□ 0.86
PRKN-201ENST00000338468 CEP350Q5VT06 3117 aa20.4■□□□□ 0.86
PRKN-201ENST00000338468 MSH5O43196 834 aa20.39■□□□□ 0.85
PRKN-201ENST00000338468 SMIM5Q71RC9 77 aa20.39■□□□□ 0.85
PRKN-201ENST00000338468 RBM42Q9BTD8 480 aaKnown RBP20.39■□□□□ 0.85
PRKN-201ENST00000338468 GNAT3A8MTJ3 354 aa20.38■□□□□ 0.85
PRKN-201ENST00000338468 COL5A3P25940 1745 aaPredicted RBP20.38■□□□□ 0.85
PRKN-201ENST00000338468 MYBBP1AQ9BQG0 1328 aaKnown RBP20.37■□□□□ 0.85
PRKN-201ENST00000338468 PTCD1O75127 700 aaKnown RBP20.37■□□□□ 0.85
PRKN-201ENST00000338468 YBX3P16989 372 aaKnown RBP eCLIP20.37■□□□□ 0.85
PRKN-201ENST00000338468 HMGB2P26583 209 aaKnown RBP20.37■□□□□ 0.85
PRKN-201ENST00000338468 AK7Q96M32 723 aa20.37■□□□□ 0.85
PRKN-201ENST00000338468 SIPA1L3O60292 1781 aaPredicted RBP20.36■□□□□ 0.85
PRKN-201ENST00000338468 TJP1Q07157 1748 aa20.36■□□□□ 0.85
PRKN-201ENST00000338468 CEMIPQ8WUJ3 1361 aa20.36■□□□□ 0.85
PRKN-201ENST00000338468 CICQ96RK0 1608 aaPredicted RBP20.36■□□□□ 0.85
PRKN-201ENST00000338468 SLC39A6Q13433 755 aa20.36■□□□□ 0.85
PRKN-201ENST00000338468 PLEKHF1Q96S99 279 aa20.36■□□□□ 0.85
PRKN-201ENST00000338468 KCPQ6ZWJ8 1503 aa20.36■□□□□ 0.85
PRKN-201ENST00000338468 IFFO2Q5TF58 517 aa20.35■□□□□ 0.85
PRKN-201ENST00000338468 PRKRIP1Q9H875 184 aaPredicted RBP20.35■□□□□ 0.85
PRKN-201ENST00000338468 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.33■□□□□ 0.85
PRKN-201ENST00000338468 ZNF316A6NFI3 1004 aaPredicted RBP20.33■□□□□ 0.85
PRKN-201ENST00000338468 GNPATO15228 680 aa20.33■□□□□ 0.85
PRKN-201ENST00000338468 MSL1Q68DK7 614 aa20.33■□□□□ 0.85
PRKN-201ENST00000338468 ATP10DQ9P241 1426 aa20.33■□□□□ 0.84
PRKN-201ENST00000338468 UBR2Q8IWV8 1755 aa20.33■□□□□ 0.84
PRKN-201ENST00000338468 CNTNAP4Q9C0A0 1308 aa20.32■□□□□ 0.84
PRKN-201ENST00000338468 MYH14Q7Z406 1995 aaKnown RBP20.32■□□□□ 0.84
PRKN-201ENST00000338468 PHF14O94880 888 aa20.32■□□□□ 0.84
PRKN-201ENST00000338468 SSFA2P28290 1259 aa20.32■□□□□ 0.84
PRKN-201ENST00000338468 RC3H1Q5TC82 1133 aaKnown RBP20.32■□□□□ 0.84
PRKN-201ENST00000338468 FLAD1Q8NFF5 587 aa20.32■□□□□ 0.84
PRKN-201ENST00000338468 TEFQ10587 303 aa20.3■□□□□ 0.84
PRKN-201ENST00000338468 CD2APQ9Y5K6 639 aa20.3■□□□□ 0.84
PRKN-201ENST00000338468 MCM10Q7L590 875 aa20.29■□□□□ 0.84
PRKN-201ENST00000338468 DNAJC10Q8IXB1 793 aa20.29■□□□□ 0.84
PRKN-201ENST00000338468 DLG5Q8TDM6 1919 aa20.28■□□□□ 0.84
PRKN-201ENST00000338468 CRKLP46109 303 aaKnown RBP20.28■□□□□ 0.84
PRKN-201ENST00000338468 DCTN1Q14203 1278 aa20.28■□□□□ 0.84
PRKN-201ENST00000338468 GPBP1L1Q9HC44 474 aaPredicted RBP20.28■□□□□ 0.84
PRKN-201ENST00000338468 HTATSF1O43719 755 aaKnown RBP20.27■□□□□ 0.84
PRKN-201ENST00000338468 RPS6KA4O75676 772 aa20.27■□□□□ 0.84
PRKN-201ENST00000338468 INTS5Q6P9B9 1019 aaKnown RBP20.27■□□□□ 0.84
PRKN-201ENST00000338468 ZNF790Q6PG37 636 aa20.27■□□□□ 0.84
PRKN-201ENST00000338468 KCNQ3O43525 872 aa20.26■□□□□ 0.83
PRKN-201ENST00000338468 RTCBQ9Y3I0 505 aaKnown RBP20.26■□□□□ 0.83
PRKN-201ENST00000338468 ADCY9O60503 1353 aa20.25■□□□□ 0.83
PRKN-201ENST00000338468 CYP19A1P11511 503 aaPredicted RBP20.25■□□□□ 0.83
PRKN-201ENST00000338468 NFE2L2Q16236 605 aa20.25■□□□□ 0.83
PRKN-201ENST00000338468 VSIG10Q8N0Z9 540 aa20.25■□□□□ 0.83
PRKN-201ENST00000338468 RTF1Q92541 710 aaKnown RBP20.25■□□□□ 0.83
PRKN-201ENST00000338468 ARHGEF1Q92888 912 aaKnown RBP20.25■□□□□ 0.83
PRKN-201ENST00000338468 ZNF496Q96IT1 587 aaPredicted RBP20.25■□□□□ 0.83
PRKN-201ENST00000338468 TRAPPC3LQ5T215 181 aa20.24■□□□□ 0.83
PRKN-201ENST00000338468 TTC5Q8N0Z6 440 aa20.24■□□□□ 0.83
PRKN-201ENST00000338468 C4AP0C0L4 1744 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms