RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 TTC22Q5TAA0 569 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 NWD1Q149M9 1564 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 DTNBO60941 627 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 AIMP1Q12904 312 aaKnown RBP10.98□□□□□ -0.65
SNCA-201ENST00000336904 SLC39A6Q13433 755 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 PROSER3Q2NL68 480 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 CCDC30Q5VVM6 783 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 IP6K1Q92551 441 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 PTPRCP08575 1304 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 MARF1Q9Y4F3 1742 aaKnown RBP10.98□□□□□ -0.65
SNCA-201ENST00000336904 TEFQ10587 303 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 ANKRD24Q8TF21 1146 aa10.98□□□□□ -0.65
SNCA-201ENST00000336904 LTN1O94822 1766 aa10.97□□□□□ -0.65
SNCA-201ENST00000336904 CDC45O75419 566 aa10.97□□□□□ -0.65
SNCA-201ENST00000336904 NUTM1Q86Y26 1132 aa10.97□□□□□ -0.65
SNCA-201ENST00000336904 RILPL2Q969X0 211 aa10.97□□□□□ -0.65
SNCA-201ENST00000336904 CHMP4BQ9H444 224 aaKnown RBP10.97□□□□□ -0.65
SNCA-201ENST00000336904 BTBD11A6QL63 1104 aa10.97□□□□□ -0.65
SNCA-201ENST00000336904 NBPF7P0C2Y1 421 aaPredicted RBP10.97□□□□□ -0.65
SNCA-201ENST00000336904 KRT28Q7Z3Y7 464 aa10.97□□□□□ -0.65
SNCA-201ENST00000336904 JARID2Q92833 1246 aaPredicted RBP10.97□□□□□ -0.65
SNCA-201ENST00000336904 TRIM6-TRIM34B2RNG4 842 aa10.96□□□□□ -0.65
SNCA-201ENST00000336904 GNAI2P04899 355 aa10.96□□□□□ -0.65
SNCA-201ENST00000336904 PXDNQ92626 1479 aa10.96□□□□□ -0.65
SNCA-201ENST00000336904 NLRP2Q9NX02 1062 aa10.96□□□□□ -0.65
SNCA-201ENST00000336904 PI4KAP2A4QPH2 592 aa10.96□□□□□ -0.66
SNCA-201ENST00000336904 FOXD4L5Q5VV16 416 aaPredicted RBP10.96□□□□□ -0.66
SNCA-201ENST00000336904 RPAP2Q8IXW5 612 aaPredicted RBP10.96□□□□□ -0.66
SNCA-201ENST00000336904 PI4KAP1Q8N8J0 262 aa10.96□□□□□ -0.66
SNCA-201ENST00000336904 FOXD4L4Q8WXT5 416 aaPredicted RBP10.96□□□□□ -0.66
SNCA-201ENST00000336904 CHAMP1Q96JM3 812 aa10.96□□□□□ -0.66
SNCA-201ENST00000336904 UNC5CLQ8IV45 518 aa10.95□□□□□ -0.66
SNCA-201ENST00000336904 ANKARQ7Z5J8 1434 aa10.95□□□□□ -0.66
SNCA-201ENST00000336904 USP44Q9H0E7 712 aa10.95□□□□□ -0.66
SNCA-201ENST00000336904 CCT4P50991 539 aaKnown RBP10.95□□□□□ -0.66
SNCA-201ENST00000336904 NPHP4O75161 1426 aaPredicted RBP10.94□□□□□ -0.66
SNCA-201ENST00000336904 UBTFL1P0CB47 393 aaPredicted RBP10.94□□□□□ -0.66
SNCA-201ENST00000336904 RBM25P49756 843 aaKnown RBP10.94□□□□□ -0.66
SNCA-201ENST00000336904 EIF4A1P60842 406 aaKnown RBP10.94□□□□□ -0.66
SNCA-201ENST00000336904 CWF19L2Q2TBE0 894 aaKnown RBP10.94□□□□□ -0.66
SNCA-201ENST00000336904 AK9Q5TCS8 1911 aa10.94□□□□□ -0.66
SNCA-201ENST00000336904 CSB-PGBD3P0DP91 1061 aa10.94□□□□□ -0.66
SNCA-201ENST00000336904 HAP1P54257 671 aaPredicted RBP10.94□□□□□ -0.66
SNCA-201ENST00000336904 ADGRL3Q9HAR2 1447 aa10.94□□□□□ -0.66
SNCA-201ENST00000336904 CHD2O14647 1828 aaKnown RBP10.93□□□□□ -0.66
SNCA-201ENST00000336904 MYL6BP14649 208 aa10.93□□□□□ -0.66
SNCA-201ENST00000336904 PDE1AP54750 535 aa10.93□□□□□ -0.66
SNCA-201ENST00000336904 C1orf141Q5JVX7 400 aa10.93□□□□□ -0.66
SNCA-201ENST00000336904 HMMRO75330 724 aa10.93□□□□□ -0.66
SNCA-201ENST00000336904 SURF6O75683 361 aaKnown RBP10.93□□□□□ -0.66
SNCA-201ENST00000336904 PPP1R42Q7Z4L9 355 aa10.93□□□□□ -0.66
SNCA-201ENST00000336904 ARHGEF25Q86VW2 580 aa10.93□□□□□ -0.66
SNCA-201ENST00000336904 IL25Q9H293 177 aa10.93□□□□□ -0.66
SNCA-201ENST00000336904 SRGAP3O43295 1099 aa10.92□□□□□ -0.66
SNCA-201ENST00000336904 PKP1Q13835 747 aa10.92□□□□□ -0.66
SNCA-201ENST00000336904 TPRNQ4KMQ1 711 aa10.92□□□□□ -0.66
SNCA-201ENST00000336904 AEBP2Q6ZN18 517 aaPredicted RBP10.92□□□□□ -0.66
SNCA-201ENST00000336904 PA2G4Q9UQ80 394 aaKnown RBP10.92□□□□□ -0.66
SNCA-201ENST00000336904 LARP6Q9BRS8 491 aaKnown RBP10.92□□□□□ -0.66
SNCA-201ENST00000336904 LRRCC1Q9C099 1032 aa10.92□□□□□ -0.66
SNCA-201ENST00000336904 SSFA2P28290 1259 aa10.91□□□□□ -0.66
SNCA-201ENST00000336904 MCM4P33991 863 aa10.91□□□□□ -0.66
SNCA-201ENST00000336904 KCNH5Q8NCM2 988 aa10.91□□□□□ -0.66
SNCA-201ENST00000336904 CHMP5Q9NZZ3 219 aa10.91□□□□□ -0.66
SNCA-201ENST00000336904 SOS1Q07889 1333 aaPredicted RBP10.91□□□□□ -0.66
SNCA-201ENST00000336904 NFAT5O94916 1531 aa10.91□□□□□ -0.66
SNCA-201ENST00000336904 RNMTO43148 476 aaKnown RBP10.91□□□□□ -0.66
SNCA-201ENST00000336904 FOXD4L6Q3SYB3 417 aaPredicted RBP10.91□□□□□ -0.66
SNCA-201ENST00000336904 FOXD4L3Q6VB84 417 aaPredicted RBP10.91□□□□□ -0.66
SNCA-201ENST00000336904 TNPO1Q92973 898 aaKnown RBP10.91□□□□□ -0.66
SNCA-201ENST00000336904 SRCIN1Q9C0H9 1055 aa10.91□□□□□ -0.66
SNCA-201ENST00000336904 PLEKHO1Q53GL0 409 aaPredicted RBP10.9□□□□□ -0.66
SNCA-201ENST00000336904 KLHDC4Q8TBB5 520 aa10.9□□□□□ -0.66
SNCA-201ENST00000336904 USP26Q9BXU7 913 aa10.9□□□□□ -0.66
SNCA-201ENST00000336904 MAP3K2Q9Y2U5 619 aa10.9□□□□□ -0.66
SNCA-201ENST00000336904 ATF3P18847 181 aa10.9□□□□□ -0.66
SNCA-201ENST00000336904 MX1P20591 662 aa10.9□□□□□ -0.66
SNCA-201ENST00000336904 OS9Q13438 667 aaPredicted RBP10.9□□□□□ -0.66
SNCA-201ENST00000336904 ZGPATQ8N5A5 531 aaKnown RBP10.9□□□□□ -0.66
SNCA-201ENST00000336904 CCDC9Q9Y3X0 531 aaKnown RBP10.9□□□□□ -0.66
SNCA-201ENST00000336904 GNAI3P08754 354 aa10.9□□□□□ -0.67
SNCA-201ENST00000336904 NFATC2IPQ8NCF5 419 aa10.9□□□□□ -0.67
SNCA-201ENST00000336904 SIL1Q9H173 461 aa10.9□□□□□ -0.67
SNCA-201ENST00000336904 ANO2Q9NQ90 1003 aa10.9□□□□□ -0.67
SNCA-201ENST00000336904 PALD1Q9ULE6 856 aa10.9□□□□□ -0.67
SNCA-201ENST00000336904 K7ELQ4 463 aaPredicted RBP10.89□□□□□ -0.67
SNCA-201ENST00000336904 ATP8B2P98198 1209 aa10.89□□□□□ -0.67
SNCA-201ENST00000336904 AKAP4Q5JQC9 854 aa10.89□□□□□ -0.67
SNCA-201ENST00000336904 DDX54Q8TDD1 881 aaKnown RBP10.89□□□□□ -0.67
SNCA-201ENST00000336904 DNAAF4Q8WXU2 420 aa10.89□□□□□ -0.67
SNCA-201ENST00000336904 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.89□□□□□ -0.67
SNCA-201ENST00000336904 FAM208AQ9UK61 1670 aaKnown RBP10.89□□□□□ -0.67
SNCA-201ENST00000336904 TMEM94Q12767 1356 aa10.89□□□□□ -0.67
SNCA-201ENST00000336904 RGPD5Q99666 1765 aa10.89□□□□□ -0.67
SNCA-201ENST00000336904 HTATSF1O43719 755 aaKnown RBP10.89□□□□□ -0.67
SNCA-201ENST00000336904 UPF3BQ9BZI7 483 aaKnown RBP10.89□□□□□ -0.67
SNCA-201ENST00000336904 PANK2Q9BZ23 570 aa10.88□□□□□ -0.67
SNCA-201ENST00000336904 C9orf78Q9NZ63 289 aaPredicted RBP10.88□□□□□ -0.67
SNCA-201ENST00000336904 CEMIPQ8WUJ3 1361 aa10.88□□□□□ -0.67
SNCA-201ENST00000336904 TRAK2O60296 914 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms