RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 RUNDC1Q96C34 613 aa21.01■□□□□ 0.95
CCDC28A-201ENST00000332797 MCM10Q7L590 875 aa21.01■□□□□ 0.95
CCDC28A-201ENST00000332797 ATG3Q9NT62 314 aa21.01■□□□□ 0.95
CCDC28A-201ENST00000332797 CCNL1Q9UK58 526 aaPredicted RBP21.01■□□□□ 0.95
CCDC28A-201ENST00000332797 KCNQ4P56696 695 aa21■□□□□ 0.95
CCDC28A-201ENST00000332797 TEFQ10587 303 aa21■□□□□ 0.95
CCDC28A-201ENST00000332797 SLC27A3Q5K4L6 730 aa21■□□□□ 0.95
CCDC28A-201ENST00000332797 PNISRQ8TF01 805 aaKnown RBP21■□□□□ 0.95
CCDC28A-201ENST00000332797 LRRC4BQ9NT99 713 aa21■□□□□ 0.95
CCDC28A-201ENST00000332797 CEMIPQ8WUJ3 1361 aa20.99■□□□□ 0.95
CCDC28A-201ENST00000332797 DCTN1Q14203 1278 aa20.99■□□□□ 0.95
CCDC28A-201ENST00000332797 NBPF14Q5TI25 921 aa20.99■□□□□ 0.95
CCDC28A-201ENST00000332797 HTATSF1O43719 755 aaKnown RBP20.98■□□□□ 0.95
CCDC28A-201ENST00000332797 PAPPAQ13219 1627 aa20.98■□□□□ 0.95
CCDC28A-201ENST00000332797 TMPOP42166 694 aaKnown RBP20.97■□□□□ 0.95
CCDC28A-201ENST00000332797 ANO8Q9HCE9 1232 aaPredicted RBP20.97■□□□□ 0.95
CCDC28A-201ENST00000332797 RRP7AQ9Y3A4 280 aaKnown RBP20.97■□□□□ 0.95
CCDC28A-201ENST00000332797 SIPA1L3O60292 1781 aaPredicted RBP20.97■□□□□ 0.95
CCDC28A-201ENST00000332797 RIPK4P57078 832 aa20.96■□□□□ 0.95
CCDC28A-201ENST00000332797 LOC102724428A0A0B4J2F2 783 aa20.95■□□□□ 0.94
CCDC28A-201ENST00000332797 PSDA5PKW4 1024 aaPredicted RBP20.95■□□□□ 0.94
CCDC28A-201ENST00000332797 SIK1P57059 783 aa20.95■□□□□ 0.94
CCDC28A-201ENST00000332797 NEUROD2Q15784 382 aa20.95■□□□□ 0.94
CCDC28A-201ENST00000332797 RBM42Q9BTD8 480 aaKnown RBP20.95■□□□□ 0.94
CCDC28A-201ENST00000332797 C5P01031 1676 aa20.95■□□□□ 0.94
CCDC28A-201ENST00000332797 SLC39A6Q13433 755 aa20.94■□□□□ 0.94
CCDC28A-201ENST00000332797 R3HDM1Q15032 1099 aaKnown RBP20.94■□□□□ 0.94
CCDC28A-201ENST00000332797 PTCD1O75127 700 aaKnown RBP20.94■□□□□ 0.94
CCDC28A-201ENST00000332797 STK32BQ9NY57 414 aa20.94■□□□□ 0.94
CCDC28A-201ENST00000332797 FAM9BQ8IZU0 186 aa20.93■□□□□ 0.94
CCDC28A-201ENST00000332797 THUMPD2Q9BTF0 503 aaKnown RBP20.93■□□□□ 0.94
CCDC28A-201ENST00000332797 TAF1LQ8IZX4 1826 aa20.92■□□□□ 0.94
CCDC28A-201ENST00000332797 APAF1O14727 1248 aa20.92■□□□□ 0.94
CCDC28A-201ENST00000332797 ATP6V1AP38606 617 aa20.92■□□□□ 0.94
CCDC28A-201ENST00000332797 LMOD3Q0VAK6 560 aa20.92■□□□□ 0.94
CCDC28A-201ENST00000332797 ZNF827Q17R98 1081 aa20.92■□□□□ 0.94
CCDC28A-201ENST00000332797 BTBD11A6QL63 1104 aa20.91■□□□□ 0.94
CCDC28A-201ENST00000332797 SLC15A2Q16348 729 aa20.91■□□□□ 0.94
CCDC28A-201ENST00000332797 TTC5Q8N0Z6 440 aa20.91■□□□□ 0.94
CCDC28A-201ENST00000332797 KCPQ6ZWJ8 1503 aa20.91■□□□□ 0.94
CCDC28A-201ENST00000332797 SLC4A9Q96Q91 983 aa20.9■□□□□ 0.94
CCDC28A-201ENST00000332797 ZNF831Q5JPB2 1677 aa20.9■□□□□ 0.94
CCDC28A-201ENST00000332797 UBR2Q8IWV8 1755 aa20.89■□□□□ 0.94
CCDC28A-201ENST00000332797 CCER2I3L3R5 266 aa20.89■□□□□ 0.94
CCDC28A-201ENST00000332797 ITPK1Q13572 414 aa20.89■□□□□ 0.94
CCDC28A-201ENST00000332797 C4BP0C0L5 1744 aa20.89■□□□□ 0.94
CCDC28A-201ENST00000332797 ZNF790Q6PG37 636 aa20.88■□□□□ 0.93
CCDC28A-201ENST00000332797 LINC00116Q8NCU8 138 aa20.88■□□□□ 0.93
CCDC28A-201ENST00000332797 AKT1S1Q96B36 256 aa20.88■□□□□ 0.93
CCDC28A-201ENST00000332797 TAF7Q15545 349 aaPredicted RBP20.88■□□□□ 0.93
CCDC28A-201ENST00000332797 MIER1Q8N108 512 aa20.88■□□□□ 0.93
CCDC28A-201ENST00000332797 TRIM35Q9UPQ4 493 aa20.88■□□□□ 0.93
CCDC28A-201ENST00000332797 TJP1Q07157 1748 aa20.87■□□□□ 0.93
CCDC28A-201ENST00000332797 SENP3-EIF4A1A0A087X0R7 540 aa20.87■□□□□ 0.93
CCDC28A-201ENST00000332797 HMGB2P26583 209 aaKnown RBP20.87■□□□□ 0.93
CCDC28A-201ENST00000332797 TUBGCP6Q96RT7 1819 aa20.86■□□□□ 0.93
CCDC28A-201ENST00000332797 KCNQ3O43525 872 aa20.86■□□□□ 0.93
CCDC28A-201ENST00000332797 MIS18AQ9NYP9 233 aa20.86■□□□□ 0.93
CCDC28A-201ENST00000332797 TFCP2L1Q9NZI6 479 aa20.86■□□□□ 0.93
CCDC28A-201ENST00000332797 CICQ96RK0 1608 aaPredicted RBP20.86■□□□□ 0.93
CCDC28A-201ENST00000332797 COL5A3P25940 1745 aaPredicted RBP20.85■□□□□ 0.93
CCDC28A-201ENST00000332797 AK7Q96M32 723 aa20.85■□□□□ 0.93
CCDC28A-201ENST00000332797 ZNF496Q96IT1 587 aaPredicted RBP20.84■□□□□ 0.93
CCDC28A-201ENST00000332797 KDM3BQ7LBC6 1761 aa20.84■□□□□ 0.93
CCDC28A-201ENST00000332797 FMNL2Q96PY5 1086 aa20.83■□□□□ 0.93
CCDC28A-201ENST00000332797 QSER1Q2KHR3 1735 aa20.83■□□□□ 0.92
CCDC28A-201ENST00000332797 HEG1Q9ULI3 1381 aa20.82■□□□□ 0.92
CCDC28A-201ENST00000332797 DNAJC10Q8IXB1 793 aa20.82■□□□□ 0.92
CCDC28A-201ENST00000332797 CASZ1Q86V15 1759 aa20.82■□□□□ 0.92
CCDC28A-201ENST00000332797 VSIG10Q8N0Z9 540 aa20.81■□□□□ 0.92
CCDC28A-201ENST00000332797 GNPATO15228 680 aa20.81■□□□□ 0.92
CCDC28A-201ENST00000332797 PDGFDQ9GZP0 370 aaPredicted RBP20.81■□□□□ 0.92
CCDC28A-201ENST00000332797 PNPLA7Q6ZV29 1317 aa20.8■□□□□ 0.92
CCDC28A-201ENST00000332797 TSPYL4Q9UJ04 414 aa20.8■□□□□ 0.92
CCDC28A-201ENST00000332797 LAS1LQ9Y4W2 734 aaKnown RBP20.8■□□□□ 0.92
CCDC28A-201ENST00000332797 UBR3Q6ZT12 1888 aa20.8■□□□□ 0.92
CCDC28A-201ENST00000332797 CNTNAP4Q9C0A0 1308 aa20.79■□□□□ 0.92
CCDC28A-201ENST00000332797 CRKLP46109 303 aaKnown RBP20.79■□□□□ 0.92
CCDC28A-201ENST00000332797 PHF14O94880 888 aa20.78■□□□□ 0.92
CCDC28A-201ENST00000332797 MSH5O43196 834 aa20.77■□□□□ 0.92
CCDC28A-201ENST00000332797 CYP19A1P11511 503 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-201ENST00000332797 RC3H1Q5TC82 1133 aaKnown RBP20.77■□□□□ 0.92
CCDC28A-201ENST00000332797 SMIM5Q71RC9 77 aa20.77■□□□□ 0.92
CCDC28A-201ENST00000332797 AMIGO3Q86WK7 504 aa20.77■□□□□ 0.92
CCDC28A-201ENST00000332797 SALL2Q9Y467 1007 aaPredicted RBP20.77■□□□□ 0.92
CCDC28A-201ENST00000332797 CALD1Q05682 793 aaKnown RBP20.76■□□□□ 0.91
CCDC28A-201ENST00000332797 BABAM1Q9NWV8 329 aa20.76■□□□□ 0.91
CCDC28A-201ENST00000332797 MYH14Q7Z406 1995 aaKnown RBP20.76■□□□□ 0.91
CCDC28A-201ENST00000332797 STARD3NLO95772 234 aa20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 SSFA2P28290 1259 aa20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 EIF4A1P60842 406 aaKnown RBP20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 CCDC27Q2M243 656 aa20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 COL23A1Q86Y22 540 aaPredicted RBP20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 FLAD1Q8NFF5 587 aa20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 TEX13AQ9BXU3 409 aaPredicted RBP20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 CCDC87Q9NVE4 849 aa20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 RTCBQ9Y3I0 505 aaKnown RBP20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 PRAMEF22A3QJZ6 481 aa20.75■□□□□ 0.91
CCDC28A-201ENST00000332797 ZBTB7AO95365 584 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms