RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 SIK1P57059 783 aa18.6■□□□□ 0.57
LIMS1-201ENST00000332345 ANP32CO43423 234 aa18.59■□□□□ 0.57
LIMS1-201ENST00000332345 RTF1Q92541 710 aaKnown RBP18.59■□□□□ 0.57
LIMS1-201ENST00000332345 AKT1S1Q96B36 256 aa18.59■□□□□ 0.57
LIMS1-201ENST00000332345 TEFQ10587 303 aa18.58■□□□□ 0.56
LIMS1-201ENST00000332345 WDR43Q15061 677 aaKnown RBP eCLIP18.58■□□□□ 0.56
LIMS1-201ENST00000332345 IL17REQ8NFR9 667 aa18.58■□□□□ 0.56
LIMS1-201ENST00000332345 PLEKHF1Q96S99 279 aa18.58■□□□□ 0.56
LIMS1-201ENST00000332345 RBM42Q9BTD8 480 aaKnown RBP18.58■□□□□ 0.56
LIMS1-201ENST00000332345 TFCP2L1Q9NZI6 479 aa18.58■□□□□ 0.56
LIMS1-201ENST00000332345 HTATSF1O43719 755 aaKnown RBP18.57■□□□□ 0.56
LIMS1-201ENST00000332345 ATP6V1AP38606 617 aa18.57■□□□□ 0.56
LIMS1-201ENST00000332345 VIRMAQ69YN4 1812 aaKnown RBP18.57■□□□□ 0.56
LIMS1-201ENST00000332345 MAPK8IP3Q9UPT6 1336 aa18.56■□□□□ 0.56
LIMS1-201ENST00000332345 ZNF827Q17R98 1081 aa18.56■□□□□ 0.56
LIMS1-201ENST00000332345 PAPPAQ13219 1627 aa18.54■□□□□ 0.56
LIMS1-201ENST00000332345 PTCD1O75127 700 aaKnown RBP18.54■□□□□ 0.56
LIMS1-201ENST00000332345 NFE2L2Q16236 605 aa18.53■□□□□ 0.56
LIMS1-201ENST00000332345 SPON1Q9HCB6 807 aa18.53■□□□□ 0.56
LIMS1-201ENST00000332345 TAF1LQ8IZX4 1826 aa18.53■□□□□ 0.56
LIMS1-201ENST00000332345 ADAMTS7Q9UKP4 1686 aa18.53■□□□□ 0.56
LIMS1-201ENST00000332345 SRCAPQ6ZRS2 3230 aa18.53■□□□□ 0.56
LIMS1-201ENST00000332345 FLAD1Q8NFF5 587 aa18.52■□□□□ 0.56
LIMS1-201ENST00000332345 AK7Q96M32 723 aa18.52■□□□□ 0.56
LIMS1-201ENST00000332345 ADAMTS8Q9UP79 889 aa18.52■□□□□ 0.56
LIMS1-201ENST00000332345 C5P01031 1676 aa18.52■□□□□ 0.56
LIMS1-201ENST00000332345 CEMIPQ8WUJ3 1361 aa18.52■□□□□ 0.55
LIMS1-201ENST00000332345 SLC39A6Q13433 755 aa18.51■□□□□ 0.55
LIMS1-201ENST00000332345 ITPK1Q13572 414 aa18.51■□□□□ 0.55
LIMS1-201ENST00000332345 MCM10Q7L590 875 aa18.51■□□□□ 0.55
LIMS1-201ENST00000332345 TTC5Q8N0Z6 440 aa18.51■□□□□ 0.55
LIMS1-201ENST00000332345 PDGFDQ9GZP0 370 aaPredicted RBP18.51■□□□□ 0.55
LIMS1-201ENST00000332345 MRC1P22897 1456 aa18.51■□□□□ 0.55
LIMS1-201ENST00000332345 LINC00116Q8NCU8 138 aa18.5■□□□□ 0.55
LIMS1-201ENST00000332345 SLC16A10Q8TF71 515 aa18.5■□□□□ 0.55
LIMS1-201ENST00000332345 RUNDC1Q96C34 613 aa18.5■□□□□ 0.55
LIMS1-201ENST00000332345 SLC4A9Q96Q91 983 aa18.5■□□□□ 0.55
LIMS1-201ENST00000332345 PNPLA7Q6ZV29 1317 aa18.49■□□□□ 0.55
LIMS1-201ENST00000332345 BTBD11A6QL63 1104 aa18.49■□□□□ 0.55
LIMS1-201ENST00000332345 ZBTB7AO95365 584 aa18.49■□□□□ 0.55
LIMS1-201ENST00000332345 RC3H1Q5TC82 1133 aaKnown RBP18.49■□□□□ 0.55
LIMS1-201ENST00000332345 MTFR1LQ9H019 292 aa18.49■□□□□ 0.55
LIMS1-201ENST00000332345 ZNF831Q5JPB2 1677 aa18.48■□□□□ 0.55
LIMS1-201ENST00000332345 RIPK4P57078 832 aa18.48■□□□□ 0.55
LIMS1-201ENST00000332345 DCTN1Q14203 1278 aa18.48■□□□□ 0.55
LIMS1-201ENST00000332345 ZNF790Q6PG37 636 aa18.48■□□□□ 0.55
LIMS1-201ENST00000332345 QSER1Q2KHR3 1735 aa18.48■□□□□ 0.55
LIMS1-201ENST00000332345 DLG5Q8TDM6 1919 aa18.47■□□□□ 0.55
LIMS1-201ENST00000332345 C4BP0C0L5 1744 aa18.47■□□□□ 0.55
LIMS1-201ENST00000332345 TAF7Q15545 349 aaPredicted RBP18.47■□□□□ 0.55
LIMS1-201ENST00000332345 CCDC146Q8IYE0 955 aa18.47■□□□□ 0.55
LIMS1-201ENST00000332345 VSIG10Q8N0Z9 540 aa18.47■□□□□ 0.55
LIMS1-201ENST00000332345 ATF5Q9Y2D1 282 aaPredicted RBP18.47■□□□□ 0.55
LIMS1-201ENST00000332345 CASZ1Q86V15 1759 aa18.47■□□□□ 0.55
LIMS1-201ENST00000332345 TMPOP42166 694 aaKnown RBP18.46■□□□□ 0.55
LIMS1-201ENST00000332345 LMOD3Q0VAK6 560 aa18.46■□□□□ 0.55
LIMS1-201ENST00000332345 COL23A1Q86Y22 540 aaPredicted RBP18.46■□□□□ 0.55
LIMS1-201ENST00000332345 LRP5O75197 1615 aa18.45■□□□□ 0.54
LIMS1-201ENST00000332345 GNPATO15228 680 aa18.45■□□□□ 0.54
LIMS1-201ENST00000332345 SSFA2P28290 1259 aa18.45■□□□□ 0.54
LIMS1-201ENST00000332345 PPP1R1BQ9UD71 204 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-201ENST00000332345 RTCBQ9Y3I0 505 aaKnown RBP18.45■□□□□ 0.54
LIMS1-201ENST00000332345 SIPA1L3O60292 1781 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-201ENST00000332345 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.44■□□□□ 0.54
LIMS1-201ENST00000332345 CCDC184Q52MB2 194 aa18.44■□□□□ 0.54
LIMS1-201ENST00000332345 PNISRQ8TF01 805 aaKnown RBP18.44■□□□□ 0.54
LIMS1-201ENST00000332345 FMNL2Q96PY5 1086 aa18.44■□□□□ 0.54
LIMS1-201ENST00000332345 TEX13AQ9BXU3 409 aaPredicted RBP18.44■□□□□ 0.54
LIMS1-201ENST00000332345 MRS2Q9HD23 443 aa18.44■□□□□ 0.54
LIMS1-201ENST00000332345 CNTNAP4Q9C0A0 1308 aa18.44■□□□□ 0.54
LIMS1-201ENST00000332345 TUBGCP6Q96RT7 1819 aa18.44■□□□□ 0.54
LIMS1-201ENST00000332345 RPS6KA4O75676 772 aa18.43■□□□□ 0.54
LIMS1-201ENST00000332345 PHF14O94880 888 aa18.43■□□□□ 0.54
LIMS1-201ENST00000332345 TRAPPC3LQ5T215 181 aa18.43■□□□□ 0.54
LIMS1-201ENST00000332345 DNAJC10Q8IXB1 793 aa18.43■□□□□ 0.54
LIMS1-201ENST00000332345 ZNF496Q96IT1 587 aaPredicted RBP18.43■□□□□ 0.54
LIMS1-201ENST00000332345 STARD3NLO95772 234 aa18.42■□□□□ 0.54
LIMS1-201ENST00000332345 CRKLP46109 303 aaKnown RBP18.42■□□□□ 0.54
LIMS1-201ENST00000332345 NEUROD2Q15784 382 aa18.42■□□□□ 0.54
LIMS1-201ENST00000332345 UBR3Q6ZT12 1888 aa18.41■□□□□ 0.54
LIMS1-201ENST00000332345 CYP19A1P11511 503 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-201ENST00000332345 PTGER2P43116 358 aa18.41■□□□□ 0.54
LIMS1-201ENST00000332345 RRP7AQ9Y3A4 280 aaKnown RBP18.41■□□□□ 0.54
LIMS1-201ENST00000332345 KCPQ6ZWJ8 1503 aa18.4■□□□□ 0.54
LIMS1-201ENST00000332345 KCNQ3O43525 872 aa18.4■□□□□ 0.54
LIMS1-201ENST00000332345 POLD1P28340 1107 aa18.4■□□□□ 0.54
LIMS1-201ENST00000332345 CCDC87Q9NVE4 849 aa18.4■□□□□ 0.54
LIMS1-201ENST00000332345 HEG1Q9ULI3 1381 aa18.4■□□□□ 0.54
LIMS1-201ENST00000332345 COL5A3P25940 1745 aaPredicted RBP18.4■□□□□ 0.54
LIMS1-201ENST00000332345 UBR2Q8IWV8 1755 aa18.4■□□□□ 0.54
LIMS1-201ENST00000332345 MYH14Q7Z406 1995 aaKnown RBP18.39■□□□□ 0.53
LIMS1-201ENST00000332345 INTS5Q6P9B9 1019 aaKnown RBP18.39■□□□□ 0.53
LIMS1-201ENST00000332345 SMIM5Q71RC9 77 aa18.39■□□□□ 0.53
LIMS1-201ENST00000332345 AMIGO3Q86WK7 504 aa18.39■□□□□ 0.53
LIMS1-201ENST00000332345 THUMPD2Q9BTF0 503 aaKnown RBP18.39■□□□□ 0.53
LIMS1-201ENST00000332345 MIS18AQ9NYP9 233 aa18.39■□□□□ 0.53
LIMS1-201ENST00000332345 APAF1O14727 1248 aa18.38■□□□□ 0.53
LIMS1-201ENST00000332345 RFC4P35249 363 aa18.38■□□□□ 0.53
LIMS1-201ENST00000332345 ARHGEF1Q92888 912 aaKnown RBP18.38■□□□□ 0.53
LIMS1-201ENST00000332345 SGIP1Q9BQI5 828 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms