RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 RBSNQ9H1K0 784 aa12.75□□□□□ -0.37
COL3A1-202ENST00000317840 RRP9O43818 475 aaKnown RBP12.75□□□□□ -0.37
COL3A1-202ENST00000317840 MBD3O95983 291 aa12.75□□□□□ -0.37
COL3A1-202ENST00000317840 CCDC30Q5VVM6 783 aa12.75□□□□□ -0.37
COL3A1-202ENST00000317840 NUTM1Q86Y26 1132 aa12.75□□□□□ -0.37
COL3A1-202ENST00000317840 ORAI2Q96SN7 254 aa12.75□□□□□ -0.37
COL3A1-202ENST00000317840 NCOA3Q9Y6Q9 1424 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 AIMP1Q12904 312 aaKnown RBP12.74□□□□□ -0.37
COL3A1-202ENST00000317840 DDX17Q92841 729 aaKnown RBP12.74□□□□□ -0.37
COL3A1-202ENST00000317840 ZC3H13Q5T200 1668 aaKnown RBP12.74□□□□□ -0.37
COL3A1-202ENST00000317840 RTL1A6NKG5 1358 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 PRR36Q9H6K5 1346 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 TPM2P07951 284 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 MCM2P49736 904 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 LARP6Q9BRS8 491 aaKnown RBP12.74□□□□□ -0.37
COL3A1-202ENST00000317840 LRRFIP2Q9Y608 721 aaKnown RBP12.74□□□□□ -0.37
COL3A1-202ENST00000317840 DIP2CQ9Y2E4 1556 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 FLIIQ13045 1269 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 MTHFSDQ2M296 383 aaKnown RBP12.74□□□□□ -0.37
COL3A1-202ENST00000317840 ROBO2Q9HCK4 1378 aa12.74□□□□□ -0.37
COL3A1-202ENST00000317840 TBX22Q9Y458 520 aa12.73□□□□□ -0.37
COL3A1-202ENST00000317840 CD163L1Q9NR16 1453 aa12.73□□□□□ -0.37
COL3A1-202ENST00000317840 CABLES1Q8TDN4 633 aa12.73□□□□□ -0.37
COL3A1-202ENST00000317840 IFT172Q9UG01 1749 aa12.73□□□□□ -0.37
COL3A1-202ENST00000317840 USP32Q8NFA0 1604 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 FRMPD1Q5SYB0 1578 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 MED14O60244 1454 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 ARHGEF28Q8N1W1 1705 aaKnown RBP12.72□□□□□ -0.37
COL3A1-202ENST00000317840 MAP3K19Q56UN5 1328 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 PHF14O94880 888 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 ZNF530Q6P9A1 599 aaPredicted RBP12.72□□□□□ -0.37
COL3A1-202ENST00000317840 LRRC59Q96AG4 307 aaKnown RBP12.72□□□□□ -0.37
COL3A1-202ENST00000317840 ESYT1Q9BSJ8 1104 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 PIK3R4Q99570 1358 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 HDGFL1Q5TGJ6 251 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 ARHGAP31Q2M1Z3 1444 aa12.72□□□□□ -0.37
COL3A1-202ENST00000317840 ZNF445P59923 1031 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 CHRNA2Q15822 529 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 RAPGEF4Q8WZA2 1011 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 STRN4Q9NRL3 753 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 CCDC9Q9Y3X0 531 aaKnown RBP12.71□□□□□ -0.37
COL3A1-202ENST00000317840 EVA1CP58658 441 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 KIAA2012Q0VF49 1180 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 MPRIPQ6WCQ1 1025 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 TSPY26PQ9H489 355 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 TMEM63CQ9P1W3 806 aa12.71□□□□□ -0.37
COL3A1-202ENST00000317840 GPT2Q8TD30 523 aa12.71□□□□□ -0.38
COL3A1-202ENST00000317840 ARHGEF40Q8TER5 1519 aa12.71□□□□□ -0.38
COL3A1-202ENST00000317840 PNMA6EA0A0J9YXQ4 647 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 CHMP3Q9Y3E7 222 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 FIBPO43427 364 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 LRSAM1Q6UWE0 723 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 PPP1R9BQ96SB3 815 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 PALD1Q9ULE6 856 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 A2ML1A8K2U0 1454 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 SRGAP3O43295 1099 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 DIAPH3Q9NSV4 1193 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 CCDC39Q9UFE4 941 aa12.7□□□□□ -0.38
COL3A1-202ENST00000317840 ANXA1P04083 346 aa12.69□□□□□ -0.38
COL3A1-202ENST00000317840 EYA1Q99502 592 aa12.69□□□□□ -0.38
COL3A1-202ENST00000317840 ATP7BP35670 1465 aa12.69□□□□□ -0.38
COL3A1-202ENST00000317840 CWC27Q6UX04 472 aaKnown RBP12.69□□□□□ -0.38
COL3A1-202ENST00000317840 KRT28Q7Z3Y7 464 aa12.69□□□□□ -0.38
COL3A1-202ENST00000317840 SMC3Q9UQE7 1217 aa12.69□□□□□ -0.38
COL3A1-202ENST00000317840 AATKQ6ZMQ8 1374 aa12.69□□□□□ -0.38
COL3A1-202ENST00000317840 DTNBO60941 627 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 NSFL1CQ9UNZ2 370 aaKnown RBP12.68□□□□□ -0.38
COL3A1-202ENST00000317840 PIK3C2BO00750 1634 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 ALKQ9UM73 1620 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 GNAT3A8MTJ3 354 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 CHMLP26374 656 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 WDR33Q9C0J8 1336 aaKnown RBP12.68□□□□□ -0.38
COL3A1-202ENST00000317840 KIF24Q5T7B8 1368 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 VPS37CA5D8V6 355 aaPredicted RBP12.68□□□□□ -0.38
COL3A1-202ENST00000317840 DDX54Q8TDD1 881 aaKnown RBP12.68□□□□□ -0.38
COL3A1-202ENST00000317840 SRCIN1Q9C0H9 1055 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 AK9Q5TCS8 1911 aa12.68□□□□□ -0.38
COL3A1-202ENST00000317840 UQCRHLA0A096LP55 91 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 OFD1O75665 1012 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 UQCRHP07919 91 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 ZDHHC9Q9Y397 364 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 CDK12Q9NYV4 1490 aaPredicted RBP12.67□□□□□ -0.38
COL3A1-202ENST00000317840 GOLGA6L4A6NEF3 574 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 ATP8B2P98198 1209 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 CSPP1Q1MSJ5 1256 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 SYTL4Q96C24 671 aaPredicted RBP12.67□□□□□ -0.38
COL3A1-202ENST00000317840 SPG7Q9UQ90 795 aa12.67□□□□□ -0.38
COL3A1-202ENST00000317840 PPP1R42Q7Z4L9 355 aa12.66□□□□□ -0.38
COL3A1-202ENST00000317840 CNTROBQ8N137 903 aa12.66□□□□□ -0.38
COL3A1-202ENST00000317840 C9orf78Q9NZ63 289 aaPredicted RBP12.66□□□□□ -0.38
COL3A1-202ENST00000317840 KIAA0232Q92628 1395 aa12.66□□□□□ -0.38
COL3A1-202ENST00000317840 CLEC17AQ6ZS10 378 aa12.66□□□□□ -0.38
COL3A1-202ENST00000317840 UNC5CLQ8IV45 518 aa12.65□□□□□ -0.38
COL3A1-202ENST00000317840 USP25Q9UHP3 1055 aa12.65□□□□□ -0.38
COL3A1-202ENST00000317840 PLEKHO1Q53GL0 409 aaPredicted RBP12.65□□□□□ -0.38
COL3A1-202ENST00000317840 ZKSCAN5Q9Y2L8 839 aa12.65□□□□□ -0.38
COL3A1-202ENST00000317840 ATP6V1DQ9Y5K8 247 aa12.65□□□□□ -0.38
COL3A1-202ENST00000317840 NOL7Q9UMY1 257 aaKnown RBP12.65□□□□□ -0.38
COL3A1-202ENST00000317840 CYP2E1P05181 493 aaPredicted RBP12.64□□□□□ -0.39
COL3A1-202ENST00000317840 USP48Q86UV5 1035 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms