RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 FRAT2O75474 233 aaPredicted RBP10.11□□□□□ -0.79
CNOT4-201ENST00000315544 FBLN1P23142 703 aa10.11□□□□□ -0.79
CNOT4-201ENST00000315544 CCDC61Q9Y6R9 512 aa10.11□□□□□ -0.79
CNOT4-201ENST00000315544 ACEP12821 1306 aa10.11□□□□□ -0.79
CNOT4-201ENST00000315544 MEGF6O75095 1541 aa10.11□□□□□ -0.79
CNOT4-201ENST00000315544 FRAT1Q92837 279 aaPredicted RBP10.11□□□□□ -0.79
CNOT4-201ENST00000315544 ERBB4Q15303 1308 aa10.11□□□□□ -0.79
CNOT4-201ENST00000315544 EXOSC9Q06265 439 aaKnown RBP10.11□□□□□ -0.79
CNOT4-201ENST00000315544 COL15A1P39059 1388 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 TIAM2Q8IVF5 1701 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 POTEAQ6S8J7 498 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 KCNB2Q92953 911 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 ANKRD31Q8N7Z5 1873 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 TTC21BQ7Z4L5 1316 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 DDX60LQ5H9U9 1706 aaKnown RBP10.1□□□□□ -0.79
CNOT4-201ENST00000315544 NFE2L2Q16236 605 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 C8orf58Q8NAV2 365 aa10.1□□□□□ -0.79
CNOT4-201ENST00000315544 SPATA31A1Q5TZJ5 1347 aa10.09□□□□□ -0.79
CNOT4-201ENST00000315544 CFAP44Q96MT7 982 aa10.09□□□□□ -0.79
CNOT4-201ENST00000315544 NOB1Q9ULX3 412 aaKnown RBP10.09□□□□□ -0.79
CNOT4-201ENST00000315544 THRAP3Q9Y2W1 955 aaKnown RBP10.09□□□□□ -0.79
CNOT4-201ENST00000315544 PSME4Q14997 1843 aa10.09□□□□□ -0.79
CNOT4-201ENST00000315544 NUTM2DQ5VT03 806 aaPredicted RBP10.09□□□□□ -0.79
CNOT4-201ENST00000315544 DCTPP1Q9H773 170 aa10.09□□□□□ -0.79
CNOT4-201ENST00000315544 RAB3GAP1Q15042 981 aa10.08□□□□□ -0.8
CNOT4-201ENST00000315544 ARHGEF25Q86VW2 580 aa10.08□□□□□ -0.8
CNOT4-201ENST00000315544 CABP1Q9NZU7 370 aa10.08□□□□□ -0.8
CNOT4-201ENST00000315544 IL25Q9H293 177 aa10.08□□□□□ -0.8
CNOT4-201ENST00000315544 CDK5RAP2Q96SN8 1893 aa10.08□□□□□ -0.8
CNOT4-201ENST00000315544 MYH14Q7Z406 1995 aaKnown RBP10.08□□□□□ -0.8
CNOT4-201ENST00000315544 ATF3P18847 181 aa10.08□□□□□ -0.8
CNOT4-201ENST00000315544 PLEKHM2Q8IWE5 1019 aa10.08□□□□□ -0.8
CNOT4-201ENST00000315544 GSE1Q14687 1217 aa10.07□□□□□ -0.8
CNOT4-201ENST00000315544 DICER1Q9UPY3 1922 aaKnown RBP10.07□□□□□ -0.8
CNOT4-201ENST00000315544 EIF4A2Q14240 407 aaKnown RBP10.07□□□□□ -0.8
CNOT4-201ENST00000315544 DUOX1Q9NRD9 1551 aa10.07□□□□□ -0.8
CNOT4-201ENST00000315544 SOS1Q07889 1333 aaPredicted RBP10.07□□□□□ -0.8
CNOT4-201ENST00000315544 RRAGDQ9NQL2 400 aaPredicted RBP10.06□□□□□ -0.8
CNOT4-201ENST00000315544 RPAP1Q9BWH6 1393 aaPredicted RBP10.06□□□□□ -0.8
CNOT4-201ENST00000315544 GAS2L3Q86XJ1 694 aa10.06□□□□□ -0.8
CNOT4-201ENST00000315544 EMILIN1Q9Y6C2 1016 aa10.06□□□□□ -0.8
CNOT4-201ENST00000315544 GGNBP2Q9H3C7 697 aa10.06□□□□□ -0.8
CNOT4-201ENST00000315544 UTYO14607 1347 aa10.06□□□□□ -0.8
CNOT4-201ENST00000315544 MAP3K19Q56UN5 1328 aa10.06□□□□□ -0.8
CNOT4-201ENST00000315544 SLC4A3P48751 1232 aa10.05□□□□□ -0.8
CNOT4-201ENST00000315544 POGKQ9P215 609 aa10.05□□□□□ -0.8
CNOT4-201ENST00000315544 RRP7AQ9Y3A4 280 aaKnown RBP10.05□□□□□ -0.8
CNOT4-201ENST00000315544 COL11A2P13942 1736 aaPredicted RBP10.05□□□□□ -0.8
CNOT4-201ENST00000315544 SOCS7O14512 581 aa10.05□□□□□ -0.8
CNOT4-201ENST00000315544 STAG3Q9UJ98 1225 aa10.05□□□□□ -0.8
CNOT4-201ENST00000315544 KRT28Q7Z3Y7 464 aa10.04□□□□□ -0.8
CNOT4-201ENST00000315544 MORC1Q86VD1 984 aa10.04□□□□□ -0.8
CNOT4-201ENST00000315544 DZIP1LQ8IYY4 767 aaKnown RBP10.04□□□□□ -0.8
CNOT4-201ENST00000315544 PMFBP1Q8TBY8 1022 aa10.04□□□□□ -0.8
CNOT4-201ENST00000315544 FOCADQ5VW36 1801 aa10.04□□□□□ -0.8
CNOT4-201ENST00000315544 NME9Q86XW9 330 aa10.04□□□□□ -0.8
CNOT4-201ENST00000315544 PDLIM2Q96JY6 352 aa10.04□□□□□ -0.8
CNOT4-201ENST00000315544 WDR43Q15061 677 aaKnown RBP eCLIP10.04□□□□□ -0.8
CNOT4-201ENST00000315544 KDM6AO15550 1401 aaPredicted RBP10.04□□□□□ -0.8
CNOT4-201ENST00000315544 NUP98P52948 1817 aa10.04□□□□□ -0.8
CNOT4-201ENST00000315544 ZNF772Q68DY9 489 aaPredicted RBP10.03□□□□□ -0.8
CNOT4-201ENST00000315544 FAM83GA6ND36 823 aa10.03□□□□□ -0.8
CNOT4-201ENST00000315544 PSME1Q06323 249 aa10.03□□□□□ -0.8
CNOT4-201ENST00000315544 POLA2Q14181 598 aa10.03□□□□□ -0.8
CNOT4-201ENST00000315544 PLPPR3Q6T4P5 718 aa10.03□□□□□ -0.8
CNOT4-201ENST00000315544 XRCC6P12956 609 aaKnown RBP eCLIP10.02□□□□□ -0.8
CNOT4-201ENST00000315544 ZKSCAN2Q63HK3 967 aa10.02□□□□□ -0.8
CNOT4-201ENST00000315544 UNC5CLQ8IV45 518 aa10.02□□□□□ -0.8
CNOT4-201ENST00000315544 ZBTB47Q9UFB7 747 aaPredicted RBP10.02□□□□□ -0.8
CNOT4-201ENST00000315544 STAP2Q9UGK3 403 aa10.02□□□□□ -0.8
CNOT4-201ENST00000315544 CEP85Q6P2H3 762 aa10.02□□□□□ -0.81
CNOT4-201ENST00000315544 ADCY9O60503 1353 aa10.02□□□□□ -0.81
CNOT4-201ENST00000315544 ST3GAL1Q11201 340 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 DDRGK1Q96HY6 314 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 USP26Q9BXU7 913 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 CHD1LQ86WJ1 897 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 ANKRD44Q8N8A2 993 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 BRPF3Q9ULD4 1205 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 AFF2P51816 1311 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 MAP3K5Q99683 1374 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.01□□□□□ -0.81
CNOT4-201ENST00000315544 WDR17Q8IZU2 1322 aa10.01□□□□□ -0.81
CNOT4-201ENST00000315544 PPM1GO15355 546 aaPredicted RBP10□□□□□ -0.81
CNOT4-201ENST00000315544 PPP1R9BQ96SB3 815 aa10□□□□□ -0.81
CNOT4-201ENST00000315544 MYH16Q9H6N6 1097 aa10□□□□□ -0.81
CNOT4-201ENST00000315544 SALL2Q9Y467 1007 aaPredicted RBP10□□□□□ -0.81
CNOT4-201ENST00000315544 CUL4AQ13619 759 aa10□□□□□ -0.81
CNOT4-201ENST00000315544 NKX1-1Q15270 411 aaPredicted RBP10□□□□□ -0.81
CNOT4-201ENST00000315544 AEBP1Q8IUX7 1158 aa10□□□□□ -0.81
CNOT4-201ENST00000315544 DDX19BQ9UMR2 479 aa10□□□□□ -0.81
CNOT4-201ENST00000315544 TBC1D9Q6ZT07 1266 aa9.99□□□□□ -0.81
CNOT4-201ENST00000315544 ANP32AP39687 249 aaKnown RBP9.99□□□□□ -0.81
CNOT4-201ENST00000315544 DDX17Q92841 729 aaKnown RBP9.99□□□□□ -0.81
CNOT4-201ENST00000315544 FLT4P35916 1363 aa9.99□□□□□ -0.81
CNOT4-201ENST00000315544 ERBB3P21860 1342 aa9.99□□□□□ -0.81
CNOT4-201ENST00000315544 DIAPH1O60610 1272 aaKnown RBP9.99□□□□□ -0.81
CNOT4-201ENST00000315544 KRT24Q2M2I5 525 aa9.99□□□□□ -0.81
CNOT4-201ENST00000315544 ADAMTSL1Q8N6G6 1762 aa9.99□□□□□ -0.81
CNOT4-201ENST00000315544 COL9A3Q14050 684 aaPredicted RBP9.98□□□□□ -0.81
CNOT4-201ENST00000315544 BABAM1Q9NWV8 329 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms