RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TWISTNBQ3B726 338 aaPredicted RBP13.38□□□□□ -0.27
LSM3-201ENST00000306024 C8orf37Q96NL8 207 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 AXIN2Q9Y2T1 843 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 TBC1D32Q96NH3 1257 aa13.37□□□□□ -0.27
LSM3-201ENST00000306024 TRIM35Q9UPQ4 493 aa13.37□□□□□ -0.27
LSM3-201ENST00000306024 IFT57Q9NWB7 429 aa13.37□□□□□ -0.27
LSM3-201ENST00000306024 NALCNQ8IZF0 1738 aa13.37□□□□□ -0.27
LSM3-201ENST00000306024 KIF24Q5T7B8 1368 aa13.37□□□□□ -0.27
LSM3-201ENST00000306024 RGPD8O14715 1765 aaPredicted RBP13.36□□□□□ -0.27
LSM3-201ENST00000306024 IGSF1Q8N6C5 1336 aa13.36□□□□□ -0.27
LSM3-201ENST00000306024 RTL1A6NKG5 1358 aa13.36□□□□□ -0.27
LSM3-201ENST00000306024 ZKSCAN2Q63HK3 967 aa13.36□□□□□ -0.27
LSM3-201ENST00000306024 ITPRIPQ8IWB1 547 aa13.36□□□□□ -0.27
LSM3-201ENST00000306024 CERKQ8TCT0 537 aa13.36□□□□□ -0.27
LSM3-201ENST00000306024 PDZRN3Q9UPQ7 1066 aa13.36□□□□□ -0.27
LSM3-201ENST00000306024 SOS2Q07890 1332 aaPredicted RBP13.36□□□□□ -0.27
LSM3-201ENST00000306024 FMN2Q9NZ56 1722 aa13.36□□□□□ -0.27
LSM3-201ENST00000306024 SMAP1Q8IYB5 467 aaPredicted RBP13.35□□□□□ -0.27
LSM3-201ENST00000306024 CFAP44Q96MT7 982 aa13.35□□□□□ -0.27
LSM3-201ENST00000306024 USP32Q8NFA0 1604 aa13.35□□□□□ -0.27
LSM3-201ENST00000306024 CHMP4AQ9BY43 222 aa13.35□□□□□ -0.27
LSM3-201ENST00000306024 ZNF330Q9Y3S2 320 aaPredicted RBP13.35□□□□□ -0.27
LSM3-201ENST00000306024 ERBB3P21860 1342 aa13.35□□□□□ -0.27
LSM3-201ENST00000306024 SSH2Q76I76 1423 aa13.35□□□□□ -0.27
LSM3-201ENST00000306024 KIF20BQ96Q89 1820 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 CABP4P57796 275 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 TAF7Q15545 349 aaPredicted RBP13.34□□□□□ -0.27
LSM3-201ENST00000306024 MBIPQ9NS73 344 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 IFNL2Q8IZJ0 200 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 MAP2P11137 1827 aaKnown RBP13.34□□□□□ -0.27
LSM3-201ENST00000306024 IL16Q14005 1332 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 BTBD11A6QL63 1104 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 KIAA2012Q0VF49 1180 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 SLC4A10Q6U841 1118 aa13.34□□□□□ -0.27
LSM3-201ENST00000306024 NWD1Q149M9 1564 aa13.33□□□□□ -0.28
LSM3-201ENST00000306024 PLCB2Q00722 1185 aa13.33□□□□□ -0.28
LSM3-201ENST00000306024 ANTXR1Q9H6X2 564 aa13.33□□□□□ -0.28
LSM3-201ENST00000306024 USP19O94966 1318 aa13.33□□□□□ -0.28
LSM3-201ENST00000306024 IL2RBP14784 551 aa13.33□□□□□ -0.28
LSM3-201ENST00000306024 LARP1Q6PKG0 1096 aaKnown RBP13.33□□□□□ -0.28
LSM3-201ENST00000306024 ZCRB1Q8TBF4 217 aaKnown RBP13.33□□□□□ -0.28
LSM3-201ENST00000306024 CBX1P83916 185 aa13.32□□□□□ -0.28
LSM3-201ENST00000306024 AKAP4Q5JQC9 854 aa13.32□□□□□ -0.28
LSM3-201ENST00000306024 ZNF771Q7L3S4 317 aaPredicted RBP13.32□□□□□ -0.28
LSM3-201ENST00000306024 TNPO1Q92973 898 aaKnown RBP13.32□□□□□ -0.28
LSM3-201ENST00000306024 TPRNQ4KMQ1 711 aa13.32□□□□□ -0.28
LSM3-201ENST00000306024 CAVIN1Q6NZI2 390 aaKnown RBP13.32□□□□□ -0.28
LSM3-201ENST00000306024 EXOC5O00471 708 aa13.31□□□□□ -0.28
LSM3-201ENST00000306024 CT47B1P0C2W7 299 aaPredicted RBP13.31□□□□□ -0.28
LSM3-201ENST00000306024 KIF16BQ96L93 1317 aa13.31□□□□□ -0.28
LSM3-201ENST00000306024 RARSP54136 660 aaKnown RBP13.31□□□□□ -0.28
LSM3-201ENST00000306024 MAP3K5Q99683 1374 aa13.31□□□□□ -0.28
LSM3-201ENST00000306024 DYNC1I1O14576 645 aa13.3□□□□□ -0.28
LSM3-201ENST00000306024 CHAF1AQ13111 956 aaPredicted RBP13.3□□□□□ -0.28
LSM3-201ENST00000306024 DZIP1LQ8IYY4 767 aaKnown RBP13.3□□□□□ -0.28
LSM3-201ENST00000306024 SSH1Q8WYL5 1049 aa13.3□□□□□ -0.28
LSM3-201ENST00000306024 HDGFL1Q5TGJ6 251 aa13.3□□□□□ -0.28
LSM3-201ENST00000306024 HTATSF1O43719 755 aaKnown RBP13.3□□□□□ -0.28
LSM3-201ENST00000306024 PDE3AQ14432 1141 aa13.3□□□□□ -0.28
LSM3-201ENST00000306024 MCTP1Q6DN14 999 aa13.29□□□□□ -0.28
LSM3-201ENST00000306024 CHMP4BQ9H444 224 aaKnown RBP13.29□□□□□ -0.28
LSM3-201ENST00000306024 ZNF521Q96K83 1311 aa13.29□□□□□ -0.28
LSM3-201ENST00000306024 MON2Q7Z3U7 1717 aa13.29□□□□□ -0.28
LSM3-201ENST00000306024 FKBP5Q13451 457 aaPredicted RBP13.29□□□□□ -0.28
LSM3-201ENST00000306024 GAS2L3Q86XJ1 694 aa13.29□□□□□ -0.28
LSM3-201ENST00000306024 LGR6Q9HBX8 967 aa13.29□□□□□ -0.28
LSM3-201ENST00000306024 WDR17Q8IZU2 1322 aa13.29□□□□□ -0.28
LSM3-201ENST00000306024 NOB1Q9ULX3 412 aaKnown RBP13.29□□□□□ -0.28
LSM3-201ENST00000306024 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
LSM3-201ENST00000306024 KRT24Q2M2I5 525 aa13.28□□□□□ -0.28
LSM3-201ENST00000306024 CCDC30Q5VVM6 783 aa13.28□□□□□ -0.28
LSM3-201ENST00000306024 BCL11BQ9C0K0 894 aaPredicted RBP13.28□□□□□ -0.28
LSM3-201ENST00000306024 SASS6Q6UVJ0 657 aa13.28□□□□□ -0.28
LSM3-201ENST00000306024 API5Q9BZZ5 524 aaKnown RBP13.28□□□□□ -0.28
LSM3-201ENST00000306024 NCBP3Q53F19 620 aaKnown RBP13.28□□□□□ -0.28
LSM3-201ENST00000306024 C8orf58Q8NAV2 365 aa13.28□□□□□ -0.28
LSM3-201ENST00000306024 RNF214Q8ND24 703 aa13.28□□□□□ -0.28
LSM3-201ENST00000306024 PRDM4Q9UKN5 801 aa13.27□□□□□ -0.28
LSM3-201ENST00000306024 STRCQ7RTU9 1775 aa13.27□□□□□ -0.28
LSM3-201ENST00000306024 TSPYL6Q8N831 410 aa13.27□□□□□ -0.29
LSM3-201ENST00000306024 CCDC39Q9UFE4 941 aa13.27□□□□□ -0.29
LSM3-201ENST00000306024 AKAP12Q02952 1782 aa13.27□□□□□ -0.29
LSM3-201ENST00000306024 PTCD1O75127 700 aaKnown RBP13.27□□□□□ -0.29
LSM3-201ENST00000306024 MAPK8IP2Q13387 824 aaPredicted RBP13.27□□□□□ -0.29
LSM3-201ENST00000306024 IL17REQ8NFR9 667 aa13.27□□□□□ -0.29
LSM3-201ENST00000306024 RBM42Q9BTD8 480 aaKnown RBP13.27□□□□□ -0.29
LSM3-201ENST00000306024 KIF1AQ12756 1690 aa13.27□□□□□ -0.29
LSM3-201ENST00000306024 RNMTO43148 476 aaKnown RBP13.26□□□□□ -0.29
LSM3-201ENST00000306024 ZNF428Q96B54 188 aa13.26□□□□□ -0.29
LSM3-201ENST00000306024 SLC39A6Q13433 755 aa13.26□□□□□ -0.29
LSM3-201ENST00000306024 CARD10Q9BWT7 1032 aa13.26□□□□□ -0.29
LSM3-201ENST00000306024 MPNDQ8N594 471 aa13.26□□□□□ -0.29
LSM3-201ENST00000306024 NFATC2IPQ8NCF5 419 aa13.26□□□□□ -0.29
LSM3-201ENST00000306024 CIZ1Q9ULV3 898 aaPredicted RBP13.26□□□□□ -0.29
LSM3-201ENST00000306024 AIMP1Q12904 312 aaKnown RBP13.25□□□□□ -0.29
LSM3-201ENST00000306024 DDB1Q16531 1140 aa13.25□□□□□ -0.29
LSM3-201ENST00000306024 TMOD3Q9NYL9 352 aa13.25□□□□□ -0.29
LSM3-201ENST00000306024 COL3A1P02461 1466 aaPredicted RBP13.25□□□□□ -0.29
LSM3-201ENST00000306024 TERF1P54274 439 aa13.25□□□□□ -0.29
LSM3-201ENST00000306024 ATF7IPQ6VMQ6 1270 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms