RNA–Protein interactions for RNA: ENST00000305264.7

HDAC3-201, Transcript of histone deacetylase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC3, Length 1,959 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-201ENST00000305264 CALD1Q05682 793 aaKnown RBP35.45■■■■□ 3.27
HDAC3-201ENST00000305264 FAM196AQ6ZSG2 479 aa35.44■■■■□ 3.26
HDAC3-201ENST00000305264 KCNQ2O43526 872 aa35.44■■■■□ 3.26
HDAC3-201ENST00000305264 GOLGA2Q08379 1002 aa35.43■■■■□ 3.26
HDAC3-201ENST00000305264 TMOD3Q9NYL9 352 aa35.43■■■■□ 3.26
HDAC3-201ENST00000305264 LAS1LQ9Y4W2 734 aaKnown RBP35.43■■■■□ 3.26
HDAC3-201ENST00000305264 IL16Q14005 1332 aa35.43■■■■□ 3.26
HDAC3-201ENST00000305264 CDCA7LQ96GN5 454 aa35.42■■■■□ 3.26
HDAC3-201ENST00000305264 KDM3BQ7LBC6 1761 aa35.42■■■■□ 3.26
HDAC3-201ENST00000305264 TAF7Q15545 349 aaPredicted RBP35.42■■■■□ 3.26
HDAC3-201ENST00000305264 MIS18AQ9NYP9 233 aa35.42■■■■□ 3.26
HDAC3-201ENST00000305264 PIGBQ92521 554 aa35.41■■■■□ 3.26
HDAC3-201ENST00000305264 PAPPAQ13219 1627 aa35.41■■■■□ 3.26
HDAC3-201ENST00000305264 PTF1AQ7RTS3 328 aa35.4■■■■□ 3.26
HDAC3-201ENST00000305264 IFT57Q9NWB7 429 aa35.4■■■■□ 3.26
HDAC3-201ENST00000305264 ZNF853P0CG23 659 aa35.4■■■■□ 3.26
HDAC3-201ENST00000305264 CFAP44Q96MT7 982 aa35.4■■■■□ 3.26
HDAC3-201ENST00000305264 BTAF1O14981 1849 aa35.38■■■■□ 3.25
HDAC3-201ENST00000305264 BTBD11A6QL63 1104 aa35.37■■■■□ 3.25
HDAC3-201ENST00000305264 GNAI1P63096 354 aa35.37■■■■□ 3.25
HDAC3-201ENST00000305264 CHL1O00533 1208 aa35.36■■■■□ 3.25
HDAC3-201ENST00000305264 TSR2Q969E8 191 aaKnown RBP35.36■■■■□ 3.25
HDAC3-201ENST00000305264 MBIPQ9NS73 344 aa35.36■■■■□ 3.25
HDAC3-201ENST00000305264 TSPYL4Q9UJ04 414 aa35.35■■■■□ 3.25
HDAC3-201ENST00000305264 SLFN5Q08AF3 891 aa35.34■■■■□ 3.25
HDAC3-201ENST00000305264 SLC39A6Q13433 755 aa35.34■■■■□ 3.25
HDAC3-201ENST00000305264 E9PSI1 815 aa35.34■■■■□ 3.25
HDAC3-201ENST00000305264 FANCIQ9NVI1 1328 aa35.33■■■■□ 3.25
HDAC3-201ENST00000305264 UBR2Q8IWV8 1755 aa35.32■■■■□ 3.24
HDAC3-201ENST00000305264 KCNQ3O43525 872 aa35.32■■■■□ 3.24
HDAC3-201ENST00000305264 TRIM37O94972 964 aa35.32■■■■□ 3.24
HDAC3-201ENST00000305264 BABAM1Q9NWV8 329 aa35.31■■■■□ 3.24
HDAC3-201ENST00000305264 ASAP1Q9ULH1 1129 aa35.31■■■■□ 3.24
HDAC3-201ENST00000305264 BCL11BQ9C0K0 894 aaPredicted RBP35.3■■■■□ 3.24
HDAC3-201ENST00000305264 MYH16Q9H6N6 1097 aa35.3■■■■□ 3.24
HDAC3-201ENST00000305264 ZNF790Q6PG37 636 aa35.29■■■■□ 3.24
HDAC3-201ENST00000305264 ATG3Q9NT62 314 aa35.29■■■■□ 3.24
HDAC3-201ENST00000305264 TNS1Q9HBL0 1735 aaKnown RBP35.29■■■■□ 3.24
HDAC3-201ENST00000305264 TRMT2AQ8IZ69 625 aaKnown RBP35.28■■■■□ 3.24
HDAC3-201ENST00000305264 KCPQ6ZWJ8 1503 aa35.28■■■■□ 3.24
HDAC3-201ENST00000305264 DUSP27Q5VZP5 1158 aa35.27■■■■□ 3.24
HDAC3-201ENST00000305264 TTC5Q8N0Z6 440 aa35.25■■■■□ 3.23
HDAC3-201ENST00000305264 KRT24Q2M2I5 525 aa35.22■■■■□ 3.23
HDAC3-201ENST00000305264 PALLDQ8WX93 1383 aa35.22■■■■□ 3.23
HDAC3-201ENST00000305264 EIF4A1P60842 406 aaKnown RBP35.22■■■■□ 3.23
HDAC3-201ENST00000305264 ZNF496Q96IT1 587 aaPredicted RBP35.21■■■■□ 3.23
HDAC3-201ENST00000305264 PTCD1O75127 700 aaKnown RBP35.2■■■■□ 3.22
HDAC3-201ENST00000305264 C5P01031 1676 aa35.18■■■■□ 3.22
HDAC3-201ENST00000305264 LY75O60449 1722 aa35.18■■■■□ 3.22
HDAC3-201ENST00000305264 EXOSC9Q06265 439 aaKnown RBP35.18■■■■□ 3.22
HDAC3-201ENST00000305264 SMARCC1Q92922 1105 aaPredicted RBP35.17■■■■□ 3.22
HDAC3-201ENST00000305264 C8orf58Q8NAV2 365 aa35.16■■■■□ 3.22
HDAC3-201ENST00000305264 FMNL2Q96PY5 1086 aa35.16■■■■□ 3.22
HDAC3-201ENST00000305264 HEG1Q9ULI3 1381 aa35.16■■■■□ 3.22
HDAC3-201ENST00000305264 RBM42Q9BTD8 480 aaKnown RBP35.15■■■■□ 3.22
HDAC3-201ENST00000305264 ILDR2Q71H61 639 aa35.14■■■■□ 3.22
HDAC3-201ENST00000305264 TSPYL6Q8N831 410 aa35.14■■■■□ 3.22
HDAC3-201ENST00000305264 SLC4A9Q96Q91 983 aa35.13■■■■□ 3.21
HDAC3-201ENST00000305264 ELL2O00472 640 aaPredicted RBP35.13■■■■□ 3.21
HDAC3-201ENST00000305264 TJP1Q07157 1748 aa35.12■■■■□ 3.21
HDAC3-201ENST00000305264 PRAMEF22A3QJZ6 481 aa35.12■■■■□ 3.21
HDAC3-201ENST00000305264 APBA3O96018 575 aa35.12■■■■□ 3.21
HDAC3-201ENST00000305264 LAMB4A4D0S4 1761 aa35.1■■■■□ 3.21
HDAC3-201ENST00000305264 LOC102724428A0A0B4J2F2 783 aa35.1■■■■□ 3.21
HDAC3-201ENST00000305264 GIGYF1O75420 1035 aaPredicted RBP35.1■■■■□ 3.21
HDAC3-201ENST00000305264 SIK1P57059 783 aa35.1■■■■□ 3.21
HDAC3-201ENST00000305264 CICQ96RK0 1608 aaPredicted RBP35.09■■■■□ 3.21
HDAC3-201ENST00000305264 ZNF831Q5JPB2 1677 aa35.09■■■■□ 3.21
HDAC3-201ENST00000305264 RGPD3A6NKT7 1758 aaPredicted RBP35.08■■■■□ 3.21
HDAC3-201ENST00000305264 RGPD4Q7Z3J3 1758 aa35.08■■■■□ 3.21
HDAC3-201ENST00000305264 TWISTNBQ3B726 338 aaPredicted RBP35.08■■■■□ 3.21
HDAC3-201ENST00000305264 SNRPA1P09661 255 aaKnown RBP35.07■■■■□ 3.2
HDAC3-201ENST00000305264 KCNQ4P56696 695 aa35.05■■■■□ 3.2
HDAC3-201ENST00000305264 VSIG10Q8N0Z9 540 aa35.05■■■■□ 3.2
HDAC3-201ENST00000305264 ATP6V1AP38606 617 aa35.04■■■■□ 3.2
HDAC3-201ENST00000305264 PLSCR1O15162 318 aa35.04■■■■□ 3.2
HDAC3-201ENST00000305264 DNAJC10Q8IXB1 793 aa35.04■■■■□ 3.2
HDAC3-201ENST00000305264 COL5A3P25940 1745 aaPredicted RBP35.03■■■■□ 3.2
HDAC3-201ENST00000305264 VAMP4O75379 141 aa35.03■■■■□ 3.2
HDAC3-201ENST00000305264 HOXB7P09629 217 aa35.02■■■■□ 3.2
HDAC3-201ENST00000305264 ITPK1Q13572 414 aa35.02■■■■□ 3.2
HDAC3-201ENST00000305264 CCNL1Q9UK58 526 aaPredicted RBP35.02■■■■□ 3.2
HDAC3-201ENST00000305264 TAF1LQ8IZX4 1826 aa35.02■■■■□ 3.2
HDAC3-201ENST00000305264 SF3B2Q13435 895 aaKnown RBP35.02■■■■□ 3.2
HDAC3-201ENST00000305264 USP16Q9Y5T5 823 aa35.02■■■■□ 3.2
HDAC3-201ENST00000305264 SOS1Q07889 1333 aaPredicted RBP34.99■■■■□ 3.19
HDAC3-201ENST00000305264 PROM2Q8N271 834 aa34.99■■■■□ 3.19
HDAC3-201ENST00000305264 NECTIN2Q92692 538 aa34.99■■■■□ 3.19
HDAC3-201ENST00000305264 EIF2S2P20042 333 aaKnown RBP34.98■■■■□ 3.19
HDAC3-201ENST00000305264 LRRC4BQ9NT99 713 aa34.98■■■■□ 3.19
HDAC3-201ENST00000305264 TXNRD1Q16881 649 aa34.98■■■■□ 3.19
HDAC3-201ENST00000305264 EN1Q05925 392 aaPredicted RBP34.97■■■■□ 3.19
HDAC3-201ENST00000305264 HDGFL1Q5TGJ6 251 aa34.97■■■■□ 3.19
HDAC3-201ENST00000305264 CT47B1P0C2W7 299 aaPredicted RBP34.96■■■■□ 3.19
HDAC3-201ENST00000305264 DEFB132Q7Z7B7 95 aa34.96■■■■□ 3.19
HDAC3-201ENST00000305264 CCDC125Q86Z20 511 aa34.96■■■■□ 3.19
HDAC3-201ENST00000305264 UPF1Q92900 1129 aaKnown RBP eCLIP34.96■■■■□ 3.197e-7■■■■□ 25
HDAC3-201ENST00000305264 BAG6P46379 1132 aa34.95■■■■□ 3.19
HDAC3-201ENST00000305264 LINC00116Q8NCU8 138 aa34.95■■■■□ 3.19
HDAC3-201ENST00000305264 TEX13AQ9BXU3 409 aaPredicted RBP34.95■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms