RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 ATP10DQ9P241 1426 aa27.29■■□□□ 1.96
TPM4-201ENST00000300933 TBC1D2Q9BYX2 928 aa27.29■■□□□ 1.96
TPM4-201ENST00000300933 HDGFL1Q5TGJ6 251 aa27.28■■□□□ 1.96
TPM4-201ENST00000300933 ATF3P18847 181 aa27.27■■□□□ 1.96
TPM4-201ENST00000300933 BMP2KLQ5H9B9 411 aa27.26■■□□□ 1.96
TPM4-201ENST00000300933 C1orf167Q5SNV9 1468 aa27.26■■□□□ 1.95
TPM4-201ENST00000300933 PLEKHM2Q8IWE5 1019 aa27.26■■□□□ 1.95
TPM4-201ENST00000300933 TMEM94Q12767 1356 aa27.26■■□□□ 1.95
TPM4-201ENST00000300933 BECN1Q14457 450 aa27.25■■□□□ 1.95
TPM4-201ENST00000300933 RPAP2Q8IXW5 612 aaPredicted RBP27.25■■□□□ 1.95
TPM4-201ENST00000300933 RRAGDQ9NQL2 400 aaPredicted RBP27.25■■□□□ 1.95
TPM4-201ENST00000300933 GSPT1P15170 499 aaKnown RBP27.24■■□□□ 1.95
TPM4-201ENST00000300933 TEFQ10587 303 aa27.24■■□□□ 1.95
TPM4-201ENST00000300933 USP54Q70EL1 1684 aa27.23■■□□□ 1.95
TPM4-201ENST00000300933 CCT4P50991 539 aaKnown RBP27.23■■□□□ 1.95
TPM4-201ENST00000300933 TBC1D9Q6ZT07 1266 aa27.23■■□□□ 1.95
TPM4-201ENST00000300933 BTBD11A6QL63 1104 aa27.22■■□□□ 1.95
TPM4-201ENST00000300933 PLEKHO1Q53GL0 409 aaPredicted RBP27.22■■□□□ 1.95
TPM4-201ENST00000300933 EXOC6BQ9Y2D4 811 aa27.22■■□□□ 1.95
TPM4-201ENST00000300933 EIF4A1P60842 406 aaKnown RBP27.21■■□□□ 1.95
TPM4-201ENST00000300933 CHRNA2Q15822 529 aa27.21■■□□□ 1.95
TPM4-201ENST00000300933 CHPF2Q9P2E5 772 aa27.2■■□□□ 1.95
TPM4-201ENST00000300933 CEMIPQ8WUJ3 1361 aa27.2■■□□□ 1.94
TPM4-201ENST00000300933 PRAMEF22A3QJZ6 481 aa27.2■■□□□ 1.94
TPM4-201ENST00000300933 C1orf141Q5JVX7 400 aa27.2■■□□□ 1.94
TPM4-201ENST00000300933 AKAP4Q5JQC9 854 aa27.19■■□□□ 1.94
TPM4-201ENST00000300933 PXDNQ92626 1479 aa27.19■■□□□ 1.94
TPM4-201ENST00000300933 NLRP2Q9NX02 1062 aa27.19■■□□□ 1.94
TPM4-201ENST00000300933 PNMA6EA0A0J9YXQ4 647 aa27.18■■□□□ 1.94
TPM4-201ENST00000300933 TSHZ3Q63HK5 1081 aa27.18■■□□□ 1.94
TPM4-201ENST00000300933 LRRC37A3O60309 1634 aa27.18■■□□□ 1.94
TPM4-201ENST00000300933 GNAI2P04899 355 aa27.18■■□□□ 1.94
TPM4-201ENST00000300933 RNMTO43148 476 aaKnown RBP27.16■■□□□ 1.94
TPM4-201ENST00000300933 LRRFIP2Q9Y608 721 aaKnown RBP27.16■■□□□ 1.94
TPM4-201ENST00000300933 L1TD1Q5T7N2 865 aaKnown RBP27.14■■□□□ 1.94
TPM4-201ENST00000300933 USP44Q9H0E7 712 aa27.14■■□□□ 1.94
TPM4-201ENST00000300933 GZF1Q9H116 711 aaPredicted RBP27.14■■□□□ 1.94
TPM4-201ENST00000300933 ANTXR1Q9H6X2 564 aa27.13■■□□□ 1.93
TPM4-201ENST00000300933 TTC22Q5TAA0 569 aa27.13■■□□□ 1.93
TPM4-201ENST00000300933 ERBB3P21860 1342 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 PI4KAP2A4QPH2 592 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 AMOTQ4VCS5 1084 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 PI4KAP1Q8N8J0 262 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 RBM42Q9BTD8 480 aaKnown RBP27.12■■□□□ 1.93
TPM4-201ENST00000300933 RGPD5Q99666 1765 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 HMMRO75330 724 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 CSB-PGBD3P0DP91 1061 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 BABAM1Q9NWV8 329 aa27.12■■□□□ 1.93
TPM4-201ENST00000300933 SLC39A6Q13433 755 aa27.11■■□□□ 1.93
TPM4-201ENST00000300933 MST1RQ04912 1400 aa27.11■■□□□ 1.93
TPM4-201ENST00000300933 PROSER3Q2NL68 480 aa27.11■■□□□ 1.93
TPM4-201ENST00000300933 STRCP1A6NGW2 1772 aa27.1■■□□□ 1.93
TPM4-201ENST00000300933 SLIT3O75094 1523 aa27.1■■□□□ 1.93
TPM4-201ENST00000300933 CDC45O75419 566 aa27.09■■□□□ 1.93
TPM4-201ENST00000300933 SDSP20132 328 aa27.09■■□□□ 1.93
TPM4-201ENST00000300933 TRPM3Q9HCF6 1732 aaPredicted RBP27.09■■□□□ 1.93
TPM4-201ENST00000300933 FAM208AQ9UK61 1670 aaKnown RBP27.09■■□□□ 1.93
TPM4-201ENST00000300933 GNAI3P08754 354 aa27.09■■□□□ 1.93
TPM4-201ENST00000300933 NBPF7P0C2Y1 421 aaPredicted RBP27.08■■□□□ 1.93
TPM4-201ENST00000300933 UBTFL1P0CB47 393 aaPredicted RBP27.08■■□□□ 1.93
TPM4-201ENST00000300933 RBM25P49756 843 aaKnown RBP27.08■■□□□ 1.93
TPM4-201ENST00000300933 RAPGEF4Q8WZA2 1011 aa27.07■■□□□ 1.92
TPM4-201ENST00000300933 KIF2CQ99661 725 aa27.07■■□□□ 1.92
TPM4-201ENST00000300933 XRCC6P12956 609 aaKnown RBP eCLIP27.06■■□□□ 1.92
TPM4-201ENST00000300933 MED1Q15648 1581 aaPredicted RBP27.06■■□□□ 1.92
TPM4-201ENST00000300933 PANK2Q9BZ23 570 aa27.06■■□□□ 1.92
TPM4-201ENST00000300933 CD2BP2O95400 341 aaKnown RBP27.05■■□□□ 1.92
TPM4-201ENST00000300933 ATP8B2P98198 1209 aa27.05■■□□□ 1.92
TPM4-201ENST00000300933 CADPS2Q86UW7 1296 aa27.05■■□□□ 1.92
TPM4-201ENST00000300933 SRCIN1Q9C0H9 1055 aa27.05■■□□□ 1.92
TPM4-201ENST00000300933 GOLGA6L3A6NEY3 463 aa27.04■■□□□ 1.92
TPM4-201ENST00000300933 IL1RAPL2Q9NP60 686 aa27.04■■□□□ 1.92
TPM4-201ENST00000300933 FOXD4L1Q9NU39 408 aa27.04■■□□□ 1.92
TPM4-201ENST00000300933 GIGYF1O75420 1035 aaPredicted RBP27.03■■□□□ 1.92
TPM4-201ENST00000300933 AIMP1Q12904 312 aaKnown RBP27.03■■□□□ 1.92
TPM4-201ENST00000300933 HSCBQ8IWL3 235 aa27.03■■□□□ 1.92
TPM4-201ENST00000300933 NFATC2IPQ8NCF5 419 aa27.03■■□□□ 1.92
TPM4-201ENST00000300933 DNAAF4Q8WXU2 420 aa27.02■■□□□ 1.92
TPM4-201ENST00000300933 PDE1AP54750 535 aa27.02■■□□□ 1.92
TPM4-201ENST00000300933 NAP1L5Q96NT1 182 aaPredicted RBP27.02■■□□□ 1.92
TPM4-201ENST00000300933 PPP1R42Q7Z4L9 355 aa27.01■■□□□ 1.91
TPM4-201ENST00000300933 NPHP3Q7Z494 1330 aa27.01■■□□□ 1.91
TPM4-201ENST00000300933 PIP4K2AP48426 406 aaPredicted RBP27.01■■□□□ 1.91
TPM4-201ENST00000300933 LRRCC1Q9C099 1032 aa27.01■■□□□ 1.91
TPM4-201ENST00000300933 BEND3Q5T5X7 828 aa27■■□□□ 1.91
TPM4-201ENST00000300933 SOS1Q07889 1333 aaPredicted RBP27■■□□□ 1.91
TPM4-201ENST00000300933 PHRF1Q9P1Y6 1649 aaKnown RBP27■■□□□ 1.91
TPM4-201ENST00000300933 MAP3K2Q9Y2U5 619 aa26.99■■□□□ 1.91
TPM4-201ENST00000300933 TATP17735 454 aaPredicted RBP26.98■■□□□ 1.91
TPM4-201ENST00000300933 CWF19L2Q2TBE0 894 aaKnown RBP26.98■■□□□ 1.91
TPM4-201ENST00000300933 DBF4Q9UBU7 674 aaPredicted RBP26.98■■□□□ 1.91
TPM4-201ENST00000300933 ADCY9O60503 1353 aa26.98■■□□□ 1.91
TPM4-201ENST00000300933 SRGAP3O43295 1099 aa26.97■■□□□ 1.91
TPM4-201ENST00000300933 SURF6O75683 361 aaKnown RBP26.97■■□□□ 1.91
TPM4-201ENST00000300933 MCM4P33991 863 aa26.97■■□□□ 1.91
TPM4-201ENST00000300933 LMO7Q8WWI1 1683 aa26.97■■□□□ 1.91
TPM4-201ENST00000300933 MYL6BP14649 208 aa26.96■■□□□ 1.91
TPM4-201ENST00000300933 BRINP3Q76B58 766 aa26.96■■□□□ 1.91
TPM4-201ENST00000300933 NUTM1Q86Y26 1132 aa26.96■■□□□ 1.91
TPM4-201ENST00000300933 NCAPD2Q15021 1401 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms