RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 CTNNA3Q9UI47 895 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 WDR97A6NE52 1622 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 MYCNP04198 464 aaPredicted RBP15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CCT2P78371 535 aaKnown RBP15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ARAP1Q96P48 1450 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 MX1P20591 662 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CPLX3Q8WVH0 158 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ZSCAN31Q96LW9 406 aaPredicted RBP15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 PPP6R1Q9UPN7 881 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 SYNJ2O15056 1496 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 TSHZ3Q63HK5 1081 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 THEMISQ8N1K5 641 aaPredicted RBP15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 JARID2Q92833 1246 aaPredicted RBP15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ANKIB1Q9P2G1 1089 aa15.88■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ZRSR2Q15696 482 aaKnown RBP15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 NUDT16Q96DE0 195 aaKnown RBP15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ANKRD30BQ9BXX2 1392 aa15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ISM2Q6H9L7 571 aa15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 MPRIPQ6WCQ1 1025 aa15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 GDPD2Q9HCC8 539 aa15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ERLIN1O75477 346 aa15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 SLFN5Q08AF3 891 aa15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CKAP2LQ8IYA6 745 aa15.87■□□□□ 0.13
CHRFAM7A-201ENST00000299847 RANBP6O60518 1105 aaKnown RBP15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ARHGAP29Q52LW3 1261 aa15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 MKNK2Q9HBH9 465 aa15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 TAF4BQ92750 862 aa15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 SMTNL1A8MU46 457 aa15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 GBP2P32456 591 aaPredicted RBP15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 TRMT1Q9NXH9 659 aaKnown RBP15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 SEC63Q9UGP8 760 aaKnown RBP15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 IFIT1P09914 478 aaKnown RBP15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 SSFA2P28290 1259 aa15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 GOPCQ9HD26 462 aa15.86■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CRACR2BQ8N4Y2 399 aaPredicted RBP15.85■□□□□ 0.13
CHRFAM7A-201ENST00000299847 SCLT1Q96NL6 688 aa15.85■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CCDC97Q96F63 343 aaPredicted RBP15.85■□□□□ 0.13
CHRFAM7A-201ENST00000299847 NME9Q86XW9 330 aa15.85■□□□□ 0.13
CHRFAM7A-201ENST00000299847 EIF3JO75822 258 aaKnown RBP15.85■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CBX1P83916 185 aa15.85■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ANKRD18AQ8IVF6 992 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 ADAMTS2O95450 1211 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CCDC178Q5BJE1 867 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 GPTP24298 496 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CCDC96Q2M329 555 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 CASQ1P31415 396 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 TAF7Q15545 349 aaPredicted RBP15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 KRT32Q14532 448 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 WASF1Q92558 559 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 TMOD3Q9NYL9 352 aa15.84■□□□□ 0.13
CHRFAM7A-201ENST00000299847 BIN1O00499 593 aa15.83■□□□□ 0.13
CHRFAM7A-201ENST00000299847 FCHSD2O94868 740 aa15.83■□□□□ 0.13
CHRFAM7A-201ENST00000299847 BCCIPQ9P287 314 aaKnown RBP eCLIP15.83■□□□□ 0.13
CHRFAM7A-201ENST00000299847 STARD3NLO95772 234 aa15.83■□□□□ 0.12
CHRFAM7A-201ENST00000299847 SSH1Q8WYL5 1049 aa15.83■□□□□ 0.12
CHRFAM7A-201ENST00000299847 JAKMIP3Q5VZ66 844 aa15.83■□□□□ 0.12
CHRFAM7A-201ENST00000299847 CCDC148Q8NFR7 591 aa15.83■□□□□ 0.12
CHRFAM7A-201ENST00000299847 CEP131Q9UPN4 1083 aa15.83■□□□□ 0.12
CHRFAM7A-201ENST00000299847 ERICH3Q5RHP9 1530 aa15.83■□□□□ 0.12
CHRFAM7A-201ENST00000299847 ANKLE2Q86XL3 938 aa15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 DZIP1Q86YF9 867 aaKnown RBP15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 ZNF397Q8NF99 534 aaPredicted RBP15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 KIF1BPQ96EK5 621 aa15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 PANK2Q9BZ23 570 aa15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 NAPBQ9H115 298 aa15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 EMILIN1Q9Y6C2 1016 aa15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 ESPNB1AK53 854 aa15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 CTNNBL1Q8WYA6 563 aaPredicted RBP15.82■□□□□ 0.12
CHRFAM7A-201ENST00000299847 ZPR1O75312 459 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 CAVIN4Q5BKX8 364 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 RPAP2Q8IXW5 612 aaPredicted RBP15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 WDR78Q5VTH9 848 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 RBM27Q9P2N5 1060 aaKnown RBP15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 VAT1LQ9HCJ6 419 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 SPTY2D1Q68D10 685 aaPredicted RBP15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 TXLNBQ8N3L3 684 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 PDCL2Q8N4E4 241 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 URI1O94763 535 aaPredicted RBP15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 IQCEQ6IPM2 695 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 C8orf76Q96K31 380 aa15.81■□□□□ 0.12
CHRFAM7A-201ENST00000299847 MACROD2A1Z1Q3 448 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 TRERF1Q96PN7 1200 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 TFIP11Q9UBB9 837 aaKnown RBP15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 CLIP2Q9UDT6 1046 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 U3KPZ7 1027 aaPredicted RBP15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 HAND2P61296 217 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 SPA17Q15506 151 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 CACNA2D4Q7Z3S7 1137 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 HFM1A2PYH4 1435 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 UBXN4Q92575 508 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 ZBTB3Q9H5J0 574 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 POLR3GO15318 223 aaPredicted RBP15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 NUP88Q99567 741 aaPredicted RBP15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 SNRKQ9NRH2 765 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 SLC12A7Q9Y666 1083 aa15.8■□□□□ 0.12
CHRFAM7A-201ENST00000299847 EHBP1L1Q8N3D4 1523 aa15.79■□□□□ 0.12
CHRFAM7A-201ENST00000299847 GOLGA8BA8MQT2 603 aa15.79■□□□□ 0.12
CHRFAM7A-201ENST00000299847 RAB11FIP3O75154 756 aa15.79■□□□□ 0.12
CHRFAM7A-201ENST00000299847 DYDC1Q8WWB3 177 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms