RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 KRT28Q7Z3Y7 464 aa29.78■■■□□ 2.36
TRIM54-201ENST00000296098 PLEKHO1Q53GL0 409 aaPredicted RBP29.77■■■□□ 2.36
TRIM54-201ENST00000296098 AKAP4Q5JQC9 854 aa29.77■■■□□ 2.36
TRIM54-201ENST00000296098 HDGFL1Q5TGJ6 251 aa29.77■■■□□ 2.36
TRIM54-201ENST00000296098 ZNF530Q6P9A1 599 aaPredicted RBP29.77■■■□□ 2.36
TRIM54-201ENST00000296098 C19orf44Q9H6X5 657 aa29.77■■■□□ 2.36
TRIM54-201ENST00000296098 MST1RQ04912 1400 aa29.77■■■□□ 2.36
TRIM54-201ENST00000296098 ALS2Q96Q42 1657 aa29.77■■■□□ 2.36
TRIM54-201ENST00000296098 GNAI3P08754 354 aa29.75■■■□□ 2.35
TRIM54-201ENST00000296098 AMOTQ4VCS5 1084 aa29.75■■■□□ 2.35
TRIM54-201ENST00000296098 LGR6Q9HBX8 967 aa29.75■■■□□ 2.35
TRIM54-201ENST00000296098 PLEKHG5O94827 1062 aa29.74■■■□□ 2.35
TRIM54-201ENST00000296098 HSCBQ8IWL3 235 aa29.74■■■□□ 2.35
TRIM54-201ENST00000296098 C16orf71Q8IYS4 520 aaPredicted RBP29.74■■■□□ 2.35
TRIM54-201ENST00000296098 ANKRD24Q8TF21 1146 aa29.74■■■□□ 2.35
TRIM54-201ENST00000296098 PXDNQ92626 1479 aa29.74■■■□□ 2.35
TRIM54-201ENST00000296098 OVOS2A0A0G2JMS6 1433 aa29.73■■■□□ 2.35
TRIM54-201ENST00000296098 APBB1O00213 710 aa29.72■■■□□ 2.35
TRIM54-201ENST00000296098 SMARCA5O60264 1052 aaPredicted RBP29.72■■■□□ 2.35
TRIM54-201ENST00000296098 EIF5BO60841 1220 aaKnown RBP29.72■■■□□ 2.35
TRIM54-201ENST00000296098 HOXB7P09629 217 aa29.72■■■□□ 2.35
TRIM54-201ENST00000296098 EIF4A1P60842 406 aaKnown RBP29.72■■■□□ 2.35
TRIM54-201ENST00000296098 BCL11AQ9H165 835 aa29.72■■■□□ 2.35
TRIM54-201ENST00000296098 OTUD7AQ8TE49 926 aaPredicted RBP29.72■■■□□ 2.35
TRIM54-201ENST00000296098 TEFQ10587 303 aa29.71■■■□□ 2.35
TRIM54-201ENST00000296098 RGPD5Q99666 1765 aa29.7■■■□□ 2.34
TRIM54-201ENST00000296098 C1orf141Q5JVX7 400 aa29.69■■■□□ 2.34
TRIM54-201ENST00000296098 CHMP4AQ9BY43 222 aa29.69■■■□□ 2.34
TRIM54-201ENST00000296098 SNX21Q969T3 373 aa29.69■■■□□ 2.34
TRIM54-201ENST00000296098 DCCP43146 1447 aa29.68■■■□□ 2.34
TRIM54-201ENST00000296098 STRCP1A6NGW2 1772 aa29.68■■■□□ 2.34
TRIM54-201ENST00000296098 MPRIPQ6WCQ1 1025 aa29.67■■■□□ 2.34
TRIM54-201ENST00000296098 BTBD11A6QL63 1104 aa29.67■■■□□ 2.34
TRIM54-201ENST00000296098 LMTK3Q96Q04 1460 aa29.67■■■□□ 2.34
TRIM54-201ENST00000296098 SPRYD3Q8NCJ5 442 aa29.66■■■□□ 2.34
TRIM54-201ENST00000296098 PHAXQ9H814 394 aaKnown RBP29.66■■■□□ 2.34
TRIM54-201ENST00000296098 TMEM94Q12767 1356 aa29.66■■■□□ 2.34
TRIM54-201ENST00000296098 RNMTO43148 476 aaKnown RBP29.66■■■□□ 2.34
TRIM54-201ENST00000296098 AXIN2Q9Y2T1 843 aa29.66■■■□□ 2.34
TRIM54-201ENST00000296098 ATF3P18847 181 aa29.65■■■□□ 2.34
TRIM54-201ENST00000296098 EIF2S2P20042 333 aaKnown RBP29.65■■■□□ 2.34
TRIM54-201ENST00000296098 KIF2CQ99661 725 aa29.65■■■□□ 2.34
TRIM54-201ENST00000296098 NCOA3Q9Y6Q9 1424 aa29.64■■■□□ 2.34
TRIM54-201ENST00000296098 SIPA1L3O60292 1781 aaPredicted RBP29.64■■■□□ 2.33
TRIM54-201ENST00000296098 ATP8B2P98198 1209 aa29.64■■■□□ 2.33
TRIM54-201ENST00000296098 GSE1Q14687 1217 aa29.64■■■□□ 2.33
TRIM54-201ENST00000296098 KCNQ3O43525 872 aa29.63■■■□□ 2.33
TRIM54-201ENST00000296098 LRRFIP2Q9Y608 721 aaKnown RBP29.63■■■□□ 2.33
TRIM54-201ENST00000296098 ADAMTS7Q9UKP4 1686 aa29.63■■■□□ 2.33
TRIM54-201ENST00000296098 ERBB3P21860 1342 aa29.63■■■□□ 2.33
TRIM54-201ENST00000296098 SDSP20132 328 aa29.62■■■□□ 2.33
TRIM54-201ENST00000296098 CHPF2Q9P2E5 772 aa29.62■■■□□ 2.33
TRIM54-201ENST00000296098 EXOC6BQ9Y2D4 811 aa29.62■■■□□ 2.33
TRIM54-201ENST00000296098 UBTFL1P0CB47 393 aaPredicted RBP29.62■■■□□ 2.33
TRIM54-201ENST00000296098 USP44Q9H0E7 712 aa29.62■■■□□ 2.33
TRIM54-201ENST00000296098 PNMA6EA0A0J9YXQ4 647 aa29.61■■■□□ 2.33
TRIM54-201ENST00000296098 CASC1Q6TDU7 716 aa29.61■■■□□ 2.33
TRIM54-201ENST00000296098 OSBPL3Q9H4L5 887 aa29.61■■■□□ 2.33
TRIM54-201ENST00000296098 CHMP5Q9NZZ3 219 aa29.61■■■□□ 2.33
TRIM54-201ENST00000296098 LRRCC1Q9C099 1032 aa29.6■■■□□ 2.33
TRIM54-201ENST00000296098 IBTKQ9P2D0 1353 aaPredicted RBP29.59■■■□□ 2.33
TRIM54-201ENST00000296098 SRCIN1Q9C0H9 1055 aa29.59■■■□□ 2.33
TRIM54-201ENST00000296098 ZC3H6P61129 1189 aaKnown RBP29.59■■■□□ 2.33
TRIM54-201ENST00000296098 PDE1AP54750 535 aa29.58■■■□□ 2.33
TRIM54-201ENST00000296098 TUBGCP6Q96RT7 1819 aa29.57■■■□□ 2.32
TRIM54-201ENST00000296098 CRYBG1Q9Y4K1 1723 aa29.56■■■□□ 2.32
TRIM54-201ENST00000296098 HSP90AB1P08238 724 aaKnown RBP29.55■■■□□ 2.32
TRIM54-201ENST00000296098 DNAAF4Q8WXU2 420 aa29.55■■■□□ 2.32
TRIM54-201ENST00000296098 SALL3Q9BXA9 1300 aa29.55■■■□□ 2.32
TRIM54-201ENST00000296098 COL18A1P39060 1754 aa29.54■■■□□ 2.32
TRIM54-201ENST00000296098 ABCC6O95255 1503 aa29.54■■■□□ 2.32
TRIM54-201ENST00000296098 TNS3Q68CZ2 1445 aa29.54■■■□□ 2.32
TRIM54-201ENST00000296098 HEG1Q9ULI3 1381 aa29.54■■■□□ 2.32
TRIM54-201ENST00000296098 DBF4Q9UBU7 674 aaPredicted RBP29.54■■■□□ 2.32
TRIM54-201ENST00000296098 NPHP3Q7Z494 1330 aa29.52■■■□□ 2.32
TRIM54-201ENST00000296098 DDX17Q92841 729 aaKnown RBP29.52■■■□□ 2.32
TRIM54-201ENST00000296098 ADCY9O60503 1353 aa29.52■■■□□ 2.32
TRIM54-201ENST00000296098 PI4KAP2A4QPH2 592 aa29.52■■■□□ 2.32
TRIM54-201ENST00000296098 BEND3Q5T5X7 828 aa29.52■■■□□ 2.32
TRIM54-201ENST00000296098 PI4KAP1Q8N8J0 262 aa29.52■■■□□ 2.32
TRIM54-201ENST00000296098 SSH3Q8TE77 659 aa29.52■■■□□ 2.32
TRIM54-201ENST00000296098 USP26Q9BXU7 913 aa29.52■■■□□ 2.32
TRIM54-201ENST00000296098 GIGYF1O75420 1035 aaPredicted RBP29.51■■■□□ 2.31
TRIM54-201ENST00000296098 MX1P20591 662 aa29.51■■■□□ 2.31
TRIM54-201ENST00000296098 CADPS2Q86UW7 1296 aa29.51■■■□□ 2.31
TRIM54-201ENST00000296098 RAPGEF4Q8WZA2 1011 aa29.51■■■□□ 2.31
TRIM54-201ENST00000296098 SCN11AQ9UI33 1791 aa29.51■■■□□ 2.31
TRIM54-201ENST00000296098 DDIT3P35638 169 aa29.5■■■□□ 2.31
TRIM54-201ENST00000296098 K7ELQ4 463 aaPredicted RBP29.5■■■□□ 2.31
TRIM54-201ENST00000296098 ANXA1P04083 346 aa29.5■■■□□ 2.31
TRIM54-201ENST00000296098 NLRP2Q9NX02 1062 aa29.5■■■□□ 2.31
TRIM54-201ENST00000296098 CD2BP2O95400 341 aaKnown RBP29.49■■■□□ 2.31
TRIM54-201ENST00000296098 RBM42Q9BTD8 480 aaKnown RBP29.49■■■□□ 2.31
TRIM54-201ENST00000296098 REC8O95072 547 aa29.49■■■□□ 2.31
TRIM54-201ENST00000296098 RABEP1Q15276 862 aa29.49■■■□□ 2.31
TRIM54-201ENST00000296098 POLA2Q14181 598 aa29.48■■■□□ 2.31
TRIM54-201ENST00000296098 PPP1R42Q7Z4L9 355 aa29.47■■■□□ 2.31
TRIM54-201ENST00000296098 MEGF6O75095 1541 aa29.46■■■□□ 2.31
TRIM54-201ENST00000296098 ERC2O15083 957 aa29.46■■■□□ 2.31
TRIM54-201ENST00000296098 CIZ1Q9ULV3 898 aaPredicted RBP29.46■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms