RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 FKBP4Q02790 459 aaKnown RBP eCLIP15.91■□□□□ 0.14
HPS3-201ENST00000296051 CNKSR2Q8WXI2 1034 aa15.91■□□□□ 0.14
HPS3-201ENST00000296051 ZNF652Q9Y2D9 606 aa15.91■□□□□ 0.14
HPS3-201ENST00000296051 CYP46A1Q9Y6A2 500 aa15.91■□□□□ 0.14
HPS3-201ENST00000296051 GPATCH8Q9UKJ3 1502 aaKnown RBP15.91■□□□□ 0.14
HPS3-201ENST00000296051 TEX14Q8IWB6 1497 aa15.91■□□□□ 0.14
HPS3-201ENST00000296051 HMGB2P26583 209 aaKnown RBP15.91■□□□□ 0.14
HPS3-201ENST00000296051 C16orf45Q96MC5 204 aaPredicted RBP15.91■□□□□ 0.14
HPS3-201ENST00000296051 SDSP20132 328 aa15.91■□□□□ 0.14
HPS3-201ENST00000296051 CASTP20810 708 aaKnown RBP15.91■□□□□ 0.14
HPS3-201ENST00000296051 KRT85P78386 507 aa15.91■□□□□ 0.14
HPS3-201ENST00000296051 SKIDA1Q1XH10 827 aa15.9■□□□□ 0.14
HPS3-201ENST00000296051 ABCF2Q9UG63 623 aa15.9■□□□□ 0.14
HPS3-201ENST00000296051 ALDH1L2Q3SY69 923 aa15.9■□□□□ 0.14
HPS3-201ENST00000296051 NPHP3Q7Z494 1330 aa15.9■□□□□ 0.14
HPS3-201ENST00000296051 PPP4R3BQ5MIZ7 849 aa15.9■□□□□ 0.14
HPS3-201ENST00000296051 PAXIP1Q6ZW49 1069 aaPredicted RBP15.9■□□□□ 0.14
HPS3-201ENST00000296051 ACSBG1Q96GR2 724 aa15.9■□□□□ 0.14
HPS3-201ENST00000296051 TRERF1Q96PN7 1200 aa15.9■□□□□ 0.14
HPS3-201ENST00000296051 ATP2B1P20020 1258 aa15.89■□□□□ 0.14
HPS3-201ENST00000296051 IGHMBP2P38935 993 aaKnown RBP15.89■□□□□ 0.14
HPS3-201ENST00000296051 PDILTQ8N807 584 aa15.89■□□□□ 0.14
HPS3-201ENST00000296051 KINO60870 393 aaKnown RBP15.89■□□□□ 0.13
HPS3-201ENST00000296051 MX1P20591 662 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 TSPYL6Q8N831 410 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 DDX11Q96FC9 970 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 GPTP24298 496 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 AMOTQ4VCS5 1084 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 GAS2L3Q86XJ1 694 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 TMX3Q96JJ7 454 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 NOS1P29475 1434 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 ATP10BO94823 1461 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 TTLL5Q6EMB2 1281 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 GIMAP6Q6P9H5 292 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 AK7Q96M32 723 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 NUP62CLQ9H1M0 184 aa15.89■□□□□ 0.13
HPS3-201ENST00000296051 TFIP11Q9UBB9 837 aaKnown RBP15.89■□□□□ 0.13
HPS3-201ENST00000296051 SMC5Q8IY18 1101 aa15.88■□□□□ 0.13
HPS3-201ENST00000296051 CEP89Q96ST8 783 aa15.88■□□□□ 0.13
HPS3-201ENST00000296051 PPFIA3O75145 1194 aa15.88■□□□□ 0.13
HPS3-201ENST00000296051 TPM3P06753 285 aa15.88■□□□□ 0.13
HPS3-201ENST00000296051 CCT4P50991 539 aaKnown RBP15.88■□□□□ 0.13
HPS3-201ENST00000296051 SAFBQ15424 915 aaKnown RBP eCLIP15.88■□□□□ 0.13
HPS3-201ENST00000296051 CHAMP1Q96JM3 812 aa15.88■□□□□ 0.13
HPS3-201ENST00000296051 RBSNQ9H1K0 784 aa15.88■□□□□ 0.13
HPS3-201ENST00000296051 MBIPQ9NS73 344 aa15.88■□□□□ 0.13
HPS3-201ENST00000296051 LMTK3Q96Q04 1460 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 TTC22Q5TAA0 569 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 SNX21Q969T3 373 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 C19orf44Q9H6X5 657 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 ZKSCAN5Q9Y2L8 839 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 NUP153P49790 1475 aaKnown RBP15.87■□□□□ 0.13
HPS3-201ENST00000296051 PDCP20941 246 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 LRSAM1Q6UWE0 723 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 SPATA32Q96LK8 384 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 PDRG1Q9NUG6 133 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 PZPP20742 1482 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 OFD1O75665 1012 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 TEX35Q5T0J7 233 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 ANKRD24Q8TF21 1146 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 MEIS3Q99687 375 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 ZBTB40Q9NUA8 1239 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 RAI14Q9P0K7 980 aa15.87■□□□□ 0.13
HPS3-201ENST00000296051 SART3Q15020 963 aaKnown RBP15.86■□□□□ 0.13
HPS3-201ENST00000296051 ZBTB3Q9H5J0 574 aa15.86■□□□□ 0.13
HPS3-201ENST00000296051 C14orf93Q9H972 538 aaKnown RBP15.86■□□□□ 0.13
HPS3-201ENST00000296051 SCAF11Q99590 1463 aaKnown RBP15.86■□□□□ 0.13
HPS3-201ENST00000296051 KRT24Q2M2I5 525 aa15.86■□□□□ 0.13
HPS3-201ENST00000296051 PRPF40BQ6NWY9 871 aaKnown RBP15.86■□□□□ 0.13
HPS3-201ENST00000296051 TRMT1Q9NXH9 659 aaKnown RBP15.86■□□□□ 0.13
HPS3-201ENST00000296051 TRMT112Q9UI30 125 aaKnown RBP15.86■□□□□ 0.13
HPS3-201ENST00000296051 PSMA5P28066 241 aa15.86■□□□□ 0.13
HPS3-201ENST00000296051 TAF7Q15545 349 aaPredicted RBP15.86■□□□□ 0.13
HPS3-201ENST00000296051 ME1P48163 572 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 ANKIB1Q9P2G1 1089 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 LRP2BPQ9P2M1 347 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 CGNQ9P2M7 1197 aaKnown RBP15.85■□□□□ 0.13
HPS3-201ENST00000296051 FAM135AQ9P2D6 1515 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 SLC3A2P08195 630 aaKnown RBP15.85■□□□□ 0.13
HPS3-201ENST00000296051 CCDC183Q5T5S1 534 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 OTUD7AQ8TE49 926 aaPredicted RBP15.85■□□□□ 0.13
HPS3-201ENST00000296051 TSC1Q92574 1164 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 UHRF1BP1LA0JNW5 1464 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 KIF14Q15058 1648 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 KCNA6P17658 529 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 MAP3K11Q16584 847 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 ERC1Q8IUD2 1116 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 IFNL2Q8IZJ0 200 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 C8orf58Q8NAV2 365 aa15.85■□□□□ 0.13
HPS3-201ENST00000296051 DYNC1I1O14576 645 aa15.84■□□□□ 0.13
HPS3-201ENST00000296051 C17orf53Q8N3J3 647 aaPredicted RBP15.84■□□□□ 0.13
HPS3-201ENST00000296051 TMOD2Q9NZR1 351 aa15.84■□□□□ 0.13
HPS3-201ENST00000296051 ARGLU1Q9NWB6 273 aaPredicted RBP15.84■□□□□ 0.13
HPS3-201ENST00000296051 IDH1O75874 414 aaKnown RBP15.83■□□□□ 0.13
HPS3-201ENST00000296051 BLOC1S2Q6QNY1 142 aa15.83■□□□□ 0.13
HPS3-201ENST00000296051 C6orf229H3BNL8 230 aa15.83■□□□□ 0.12
HPS3-201ENST00000296051 METTL24Q5JXM2 366 aa15.83■□□□□ 0.12
HPS3-201ENST00000296051 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.83■□□□□ 0.12
HPS3-201ENST00000296051 NOLC1Q14978 699 aaKnown RBP eCLIP15.83■□□□□ 0.12
HPS3-201ENST00000296051 TCEANC2Q96MN5 208 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms