RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 REC8O95072 547 aa12.71□□□□□ -0.37
SKA1-201ENST00000285116 PRDM4Q9UKN5 801 aa12.71□□□□□ -0.37
SKA1-201ENST00000285116 PTPRUQ92729 1446 aa12.71□□□□□ -0.37
SKA1-201ENST00000285116 ZBTB7CA1YPR0 619 aa12.71□□□□□ -0.38
SKA1-201ENST00000285116 EPB41L2O43491 1005 aaKnown RBP12.71□□□□□ -0.38
SKA1-201ENST00000285116 RBM10P98175 930 aaKnown RBP12.71□□□□□ -0.38
SKA1-201ENST00000285116 R3HCC1Q9Y3T6 440 aaKnown RBP12.71□□□□□ -0.38
SKA1-201ENST00000285116 TMEM2Q9UHN6 1383 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 AK9Q5TCS8 1911 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 HMMRO75330 724 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 SDSP20132 328 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 FOXD4L1Q9NU39 408 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 ELL2O00472 640 aaPredicted RBP12.7□□□□□ -0.38
SKA1-201ENST00000285116 ST18O60284 1047 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 CCT4P50991 539 aaKnown RBP12.7□□□□□ -0.38
SKA1-201ENST00000285116 RRS1Q15050 365 aaKnown RBP12.7□□□□□ -0.38
SKA1-201ENST00000285116 SALL3Q9BXA9 1300 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 PLEKHG1Q9ULL1 1385 aa12.7□□□□□ -0.38
SKA1-201ENST00000285116 MARF1Q9Y4F3 1742 aaKnown RBP12.69□□□□□ -0.38
SKA1-201ENST00000285116 PDLIM2Q96JY6 352 aa12.69□□□□□ -0.38
SKA1-201ENST00000285116 FAM13BQ9NYF5 915 aa12.69□□□□□ -0.38
SKA1-201ENST00000285116 TTC21AQ8NDW8 1320 aa12.69□□□□□ -0.38
SKA1-201ENST00000285116 ROBO2Q9HCK4 1378 aa12.69□□□□□ -0.38
SKA1-201ENST00000285116 CSPP1Q1MSJ5 1256 aa12.69□□□□□ -0.38
SKA1-201ENST00000285116 DIP2AQ14689 1571 aa12.69□□□□□ -0.38
SKA1-201ENST00000285116 HTATSF1O43719 755 aaKnown RBP12.68□□□□□ -0.38
SKA1-201ENST00000285116 ERC2O15083 957 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 MCM5P33992 734 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 MCM2P49736 904 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 DDX17Q92841 729 aaKnown RBP12.68□□□□□ -0.38
SKA1-201ENST00000285116 LMBRD1Q9NUN5 540 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 CRYBG1Q9Y4K1 1723 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 SULT6B1Q6IMI4 303 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 SBNO1A3KN83 1393 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 TNRQ92752 1358 aa12.68□□□□□ -0.38
SKA1-201ENST00000285116 PIK3C2AO00443 1686 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 DYNC1I1O14576 645 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 AOX1Q06278 1338 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 LMOD2Q6P5Q4 547 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 UQCRHLA0A096LP55 91 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 KDM4FA0A1W2PPD8 638 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 UQCRHP07919 91 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 ANAPC15P60006 121 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 PLCB2Q00722 1185 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 DCTN1Q14203 1278 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 ZSCAN23Q3MJ62 389 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 AEBP1Q8IUX7 1158 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 BABAM1Q9NWV8 329 aa12.67□□□□□ -0.38
SKA1-201ENST00000285116 SMAP1Q8IYB5 467 aaPredicted RBP12.66□□□□□ -0.38
SKA1-201ENST00000285116 FLT4P35916 1363 aa12.66□□□□□ -0.38
SKA1-201ENST00000285116 C16orf71Q8IYS4 520 aaPredicted RBP12.66□□□□□ -0.38
SKA1-201ENST00000285116 MEIS3Q99687 375 aa12.66□□□□□ -0.38
SKA1-201ENST00000285116 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.66□□□□□ -0.38
SKA1-201ENST00000285116 ZKSCAN5Q9Y2L8 839 aa12.66□□□□□ -0.38
SKA1-201ENST00000285116 CAVIN1Q6NZI2 390 aaKnown RBP12.65□□□□□ -0.38
SKA1-201ENST00000285116 SLIT1O75093 1534 aa12.65□□□□□ -0.38
SKA1-201ENST00000285116 ACEP12821 1306 aa12.65□□□□□ -0.38
SKA1-201ENST00000285116 NWD1Q149M9 1564 aa12.65□□□□□ -0.38
SKA1-201ENST00000285116 MCTP1Q6DN14 999 aa12.65□□□□□ -0.38
SKA1-201ENST00000285116 RBSNQ9H1K0 784 aa12.65□□□□□ -0.38
SKA1-201ENST00000285116 IGSF1Q8N6C5 1336 aa12.65□□□□□ -0.38
SKA1-201ENST00000285116 PDE1AP54750 535 aa12.65□□□□□ -0.39
SKA1-201ENST00000285116 CUL4AQ13619 759 aa12.65□□□□□ -0.39
SKA1-201ENST00000285116 OTUD7AQ8TE49 926 aaPredicted RBP12.65□□□□□ -0.39
SKA1-201ENST00000285116 STAP2Q9UGK3 403 aa12.65□□□□□ -0.39
SKA1-201ENST00000285116 NCLP19338 710 aaKnown RBP12.64□□□□□ -0.39
SKA1-201ENST00000285116 KLHL34Q8N239 644 aa12.64□□□□□ -0.39
SKA1-201ENST00000285116 INTS4Q96HW7 963 aaKnown RBP12.64□□□□□ -0.39
SKA1-201ENST00000285116 ARHGAP23Q9P227 1491 aa12.64□□□□□ -0.39
SKA1-201ENST00000285116 MED1Q15648 1581 aaPredicted RBP12.63□□□□□ -0.39
SKA1-201ENST00000285116 CEP170BQ9Y4F5 1589 aaPredicted RBP12.63□□□□□ -0.39
SKA1-201ENST00000285116 SRCIN1Q9C0H9 1055 aa12.63□□□□□ -0.39
SKA1-201ENST00000285116 ZDHHC9Q9Y397 364 aa12.63□□□□□ -0.39
SKA1-201ENST00000285116 UTRNP46939 3433 aa12.63□□□□□ -0.39
SKA1-201ENST00000285116 KCNA6P17658 529 aa12.63□□□□□ -0.39
SKA1-201ENST00000285116 SASS6Q6UVJ0 657 aa12.63□□□□□ -0.39
SKA1-201ENST00000285116 MCM10Q7L590 875 aa12.63□□□□□ -0.39
SKA1-201ENST00000285116 CCDC39Q9UFE4 941 aa12.63□□□□□ -0.39
SKA1-201ENST00000285116 GNAI2P04899 355 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 SLC4A2P04920 1241 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 PODXL2Q9NZ53 605 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 AMOTL2Q9Y2J4 779 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 MAP3K19Q56UN5 1328 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 GNAI3P08754 354 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 PRIM1P49642 420 aaKnown RBP12.62□□□□□ -0.39
SKA1-201ENST00000285116 KRT24Q2M2I5 525 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 EID1Q9Y6B2 187 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 ANKARQ7Z5J8 1434 aa12.62□□□□□ -0.39
SKA1-201ENST00000285116 RGPD8O14715 1765 aaPredicted RBP12.61□□□□□ -0.39
SKA1-201ENST00000285116 KDM3BQ7LBC6 1761 aa12.61□□□□□ -0.39
SKA1-201ENST00000285116 MBD3O95983 291 aa12.61□□□□□ -0.39
SKA1-201ENST00000285116 ESYT1Q9BSJ8 1104 aa12.61□□□□□ -0.39
SKA1-201ENST00000285116 PHRF1Q9P1Y6 1649 aaKnown RBP12.61□□□□□ -0.39
SKA1-201ENST00000285116 SMARCA5O60264 1052 aaPredicted RBP12.61□□□□□ -0.39
SKA1-201ENST00000285116 HSP90AB2PQ58FF8 381 aa12.61□□□□□ -0.39
SKA1-201ENST00000285116 ATP8B2P98198 1209 aa12.6□□□□□ -0.39
SKA1-201ENST00000285116 BRD1O95696 1058 aa12.6□□□□□ -0.39
SKA1-201ENST00000285116 MCCP23508 829 aa12.6□□□□□ -0.39
SKA1-201ENST00000285116 MTHFSDQ2M296 383 aaKnown RBP12.6□□□□□ -0.39
SKA1-201ENST00000285116 LRSAM1Q6UWE0 723 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms