RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 KDM6AO15550 1401 aaPredicted RBP32.33■■■□□ 2.77
SSBP4-201ENST00000270061 HMGB2P26583 209 aaKnown RBP32.32■■■□□ 2.77
SSBP4-201ENST00000270061 VIRMAQ69YN4 1812 aaKnown RBP32.32■■■□□ 2.76
SSBP4-201ENST00000270061 TFCP2L1Q9NZI6 479 aa32.32■■■□□ 2.76
SSBP4-201ENST00000270061 SCN11AQ9UI33 1791 aa32.32■■■□□ 2.76
SSBP4-201ENST00000270061 ASAP1Q9ULH1 1129 aa32.3■■■□□ 2.76
SSBP4-201ENST00000270061 NUDCQ9Y266 331 aa32.3■■■□□ 2.76
SSBP4-201ENST00000270061 PPP1R1BQ9UD71 204 aaPredicted RBP32.29■■■□□ 2.76
SSBP4-201ENST00000270061 AKAP4Q5JQC9 854 aa32.28■■■□□ 2.76
SSBP4-201ENST00000270061 MTFR1LQ9H019 292 aa32.28■■■□□ 2.76
SSBP4-201ENST00000270061 CABP4P57796 275 aa32.27■■■□□ 2.76
SSBP4-201ENST00000270061 NGEFQ8N5V2 710 aa32.27■■■□□ 2.76
SSBP4-201ENST00000270061 ATF5Q9Y2D1 282 aaPredicted RBP32.27■■■□□ 2.76
SSBP4-201ENST00000270061 LOC102724428A0A0B4J2F2 783 aa32.26■■■□□ 2.75
SSBP4-201ENST00000270061 SIK1P57059 783 aa32.26■■■□□ 2.75
SSBP4-201ENST00000270061 ATG3Q9NT62 314 aa32.26■■■□□ 2.75
SSBP4-201ENST00000270061 PNPLA7Q6ZV29 1317 aa32.26■■■□□ 2.75
SSBP4-201ENST00000270061 SENP3-EIF4A1A0A087X0R7 540 aa32.25■■■□□ 2.75
SSBP4-201ENST00000270061 C4BP0C0L5 1744 aa32.24■■■□□ 2.75
SSBP4-201ENST00000270061 MTHFSDQ2M296 383 aaKnown RBP32.24■■■□□ 2.75
SSBP4-201ENST00000270061 SALL2Q9Y467 1007 aaPredicted RBP32.22■■■□□ 2.75
SSBP4-201ENST00000270061 PTGER2P43116 358 aa32.21■■■□□ 2.75
SSBP4-201ENST00000270061 NFATC2IPQ8NCF5 419 aa32.21■■■□□ 2.75
SSBP4-201ENST00000270061 SLC16A10Q8TF71 515 aa32.21■■■□□ 2.75
SSBP4-201ENST00000270061 CCDC146Q8IYE0 955 aa32.2■■■□□ 2.75
SSBP4-201ENST00000270061 ATP6V1AP38606 617 aa32.19■■■□□ 2.74
SSBP4-201ENST00000270061 ZNF521Q96K83 1311 aa32.19■■■□□ 2.74
SSBP4-201ENST00000270061 RUNDC1Q96C34 613 aa32.19■■■□□ 2.74
SSBP4-201ENST00000270061 SUPT16HQ9Y5B9 1047 aaKnown RBP32.19■■■□□ 2.74
SSBP4-201ENST00000270061 ZNF831Q5JPB2 1677 aa32.18■■■□□ 2.74
SSBP4-201ENST00000270061 UBR3Q6ZT12 1888 aa32.17■■■□□ 2.74
SSBP4-201ENST00000270061 APAF1O14727 1248 aa32.17■■■□□ 2.74
SSBP4-201ENST00000270061 U2AF1L5P0DN76 240 aaPredicted RBP32.17■■■□□ 2.74
SSBP4-201ENST00000270061 U2AF1Q01081 240 aaKnown RBP eCLIP32.17■■■□□ 2.74
SSBP4-201ENST00000270061 AK7Q96M32 723 aa32.17■■■□□ 2.74
SSBP4-201ENST00000270061 LGR6Q9HBX8 967 aa32.17■■■□□ 2.74
SSBP4-201ENST00000270061 NEFLP07196 543 aa32.16■■■□□ 2.74
SSBP4-201ENST00000270061 RBM42Q9BTD8 480 aaKnown RBP32.16■■■□□ 2.74
SSBP4-201ENST00000270061 ADAMTS7Q9UKP4 1686 aa32.16■■■□□ 2.74
SSBP4-201ENST00000270061 RNMTO43148 476 aaKnown RBP32.15■■■□□ 2.74
SSBP4-201ENST00000270061 MSH5O43196 834 aa32.15■■■□□ 2.74
SSBP4-201ENST00000270061 GAS2L2Q8NHY3 880 aa32.15■■■□□ 2.74
SSBP4-201ENST00000270061 RSPH6AQ9H0K4 717 aa32.15■■■□□ 2.74
SSBP4-201ENST00000270061 PRKAR2BP31323 418 aa32.14■■■□□ 2.74
SSBP4-201ENST00000270061 ITPK1Q13572 414 aa32.14■■■□□ 2.74
SSBP4-201ENST00000270061 NCBP3Q53F19 620 aaKnown RBP32.14■■■□□ 2.74
SSBP4-201ENST00000270061 COL23A1Q86Y22 540 aaPredicted RBP32.14■■■□□ 2.74
SSBP4-201ENST00000270061 LINC00116Q8NCU8 138 aa32.14■■■□□ 2.74
SSBP4-201ENST00000270061 SGIP1Q9BQI5 828 aa32.14■■■□□ 2.74
SSBP4-201ENST00000270061 SLC52A2Q9HAB3 445 aa32.14■■■□□ 2.74
SSBP4-201ENST00000270061 FLAD1Q8NFF5 587 aa32.14■■■□□ 2.74
SSBP4-201ENST00000270061 COL24A1Q17RW2 1714 aa32.13■■■□□ 2.73
SSBP4-201ENST00000270061 MRC1P22897 1456 aa32.13■■■□□ 2.73
SSBP4-201ENST00000270061 SLC4A9Q96Q91 983 aa32.11■■■□□ 2.73
SSBP4-201ENST00000270061 COL5A3P25940 1745 aaPredicted RBP32.11■■■□□ 2.73
SSBP4-201ENST00000270061 MAP3K5Q99683 1374 aa32.1■■■□□ 2.73
SSBP4-201ENST00000270061 GNAT3A8MTJ3 354 aa32.09■■■□□ 2.73
SSBP4-201ENST00000270061 FCHSD2O94868 740 aa32.09■■■□□ 2.73
SSBP4-201ENST00000270061 PHACTR3Q96KR7 559 aa32.09■■■□□ 2.73
SSBP4-201ENST00000270061 PTCD1O75127 700 aaKnown RBP32.09■■■□□ 2.73
SSBP4-201ENST00000270061 CDCA7LQ96GN5 454 aa32.09■■■□□ 2.73
SSBP4-201ENST00000270061 POLD1P28340 1107 aa32.07■■■□□ 2.72
SSBP4-201ENST00000270061 FKBP8Q14318 412 aa32.07■■■□□ 2.72
SSBP4-201ENST00000270061 ARXQ96QS3 562 aa32.07■■■□□ 2.72
SSBP4-201ENST00000270061 PNNQ9H307 717 aaKnown RBP32.07■■■□□ 2.72
SSBP4-201ENST00000270061 GNPATO15228 680 aa32.06■■■□□ 2.72
SSBP4-201ENST00000270061 PHF14O94880 888 aa32.06■■■□□ 2.72
SSBP4-201ENST00000270061 GOLGA2Q08379 1002 aa32.06■■■□□ 2.72
SSBP4-201ENST00000270061 AMIGO3Q86WK7 504 aa32.06■■■□□ 2.72
SSBP4-201ENST00000270061 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP32.05■■■□□ 2.72
SSBP4-201ENST00000270061 SSFA2P28290 1259 aa32.05■■■□□ 2.72
SSBP4-201ENST00000270061 PLEKHF1Q96S99 279 aa32.05■■■□□ 2.72
SSBP4-201ENST00000270061 MYH14Q7Z406 1995 aaKnown RBP32.04■■■□□ 2.72
SSBP4-201ENST00000270061 RNF123Q5XPI4 1314 aa32.04■■■□□ 2.72
SSBP4-201ENST00000270061 FHDC1Q9C0D6 1143 aaPredicted RBP32.03■■■□□ 2.72
SSBP4-201ENST00000270061 CCDC27Q2M243 656 aa32.02■■■□□ 2.72
SSBP4-201ENST00000270061 CICQ96RK0 1608 aaPredicted RBP32.02■■■□□ 2.72
SSBP4-201ENST00000270061 SIPA1L3O60292 1781 aaPredicted RBP32.02■■■□□ 2.72
SSBP4-201ENST00000270061 SMIM5Q71RC9 77 aa32.02■■■□□ 2.72
SSBP4-201ENST00000270061 IL17REQ8NFR9 667 aa32.02■■■□□ 2.72
SSBP4-201ENST00000270061 TJP1Q07157 1748 aa32.01■■■□□ 2.72
SSBP4-201ENST00000270061 TEFQ10587 303 aa32.01■■■□□ 2.71
SSBP4-201ENST00000270061 SLC39A6Q13433 755 aa32.01■■■□□ 2.71
SSBP4-201ENST00000270061 RC3H1Q5TC82 1133 aaKnown RBP32■■■□□ 2.71
SSBP4-201ENST00000270061 MSL1Q68DK7 614 aa32■■■□□ 2.71
SSBP4-201ENST00000270061 CNTNAP4Q9C0A0 1308 aa32■■■□□ 2.71
SSBP4-201ENST00000270061 SLFN5Q08AF3 891 aa31.99■■■□□ 2.71
SSBP4-201ENST00000270061 TRMT2AQ8IZ69 625 aaKnown RBP31.99■■■□□ 2.71
SSBP4-201ENST00000270061 WWC1Q8IX03 1113 aa31.99■■■□□ 2.71
SSBP4-201ENST00000270061 SYT17Q9BSW7 474 aa31.99■■■□□ 2.71
SSBP4-201ENST00000270061 RTCBQ9Y3I0 505 aaKnown RBP31.99■■■□□ 2.71
SSBP4-201ENST00000270061 UBR2Q8IWV8 1755 aa31.98■■■□□ 2.71
SSBP4-201ENST00000270061 NEFMP07197 916 aa31.97■■■□□ 2.71
SSBP4-201ENST00000270061 DUSP27Q5VZP5 1158 aa31.97■■■□□ 2.71
SSBP4-201ENST00000270061 ERICH6BQ5W0A0 696 aa31.97■■■□□ 2.71
SSBP4-201ENST00000270061 CEMIPQ8WUJ3 1361 aa31.96■■■□□ 2.71
SSBP4-201ENST00000270061 KCPQ6ZWJ8 1503 aa31.96■■■□□ 2.71
SSBP4-201ENST00000270061 DLG5Q8TDM6 1919 aa31.95■■■□□ 2.71
SSBP4-201ENST00000270061 UTRNP46939 3433 aa31.95■■■□□ 2.7
SSBP4-201ENST00000270061 E9PSI1 815 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms