RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 MAP3K5Q99683 1374 aa19.73■□□□□ 0.75
COPS3-201ENST00000268717 EXOC5O00471 708 aa19.73■□□□□ 0.75
COPS3-201ENST00000268717 TRIM37O94972 964 aa19.73■□□□□ 0.75
COPS3-201ENST00000268717 CANXP27824 592 aaKnown RBP19.73■□□□□ 0.75
COPS3-201ENST00000268717 KIF16BQ96L93 1317 aa19.72■□□□□ 0.75
COPS3-201ENST00000268717 GNAT3A8MTJ3 354 aa19.72■□□□□ 0.75
COPS3-201ENST00000268717 BAG6P46379 1132 aa19.72■□□□□ 0.75
COPS3-201ENST00000268717 USHBP1Q8N6Y0 703 aa19.72■□□□□ 0.75
COPS3-201ENST00000268717 MARCH10Q8NA82 808 aaPredicted RBP19.72■□□□□ 0.75
COPS3-201ENST00000268717 BABAM1Q9NWV8 329 aa19.72■□□□□ 0.75
COPS3-201ENST00000268717 LAS1LQ9Y4W2 734 aaKnown RBP19.72■□□□□ 0.75
COPS3-201ENST00000268717 DCTN1Q14203 1278 aa19.71■□□□□ 0.75
COPS3-201ENST00000268717 AMOTQ4VCS5 1084 aa19.71■□□□□ 0.75
COPS3-201ENST00000268717 MCM10Q7L590 875 aa19.7■□□□□ 0.74
COPS3-201ENST00000268717 SSH1Q8WYL5 1049 aa19.7■□□□□ 0.74
COPS3-201ENST00000268717 SMC4Q9NTJ3 1288 aa19.7■□□□□ 0.74
COPS3-201ENST00000268717 BCL9O00512 1426 aa19.7■□□□□ 0.74
COPS3-201ENST00000268717 VAMP4O75379 141 aa19.69■□□□□ 0.74
COPS3-201ENST00000268717 ZKSCAN2Q63HK3 967 aa19.69■□□□□ 0.74
COPS3-201ENST00000268717 IPO8O15397 1037 aaKnown RBP19.67■□□□□ 0.74
COPS3-201ENST00000268717 EN1Q05925 392 aaPredicted RBP19.67■□□□□ 0.74
COPS3-201ENST00000268717 PLEKHO1Q53GL0 409 aaPredicted RBP19.67■□□□□ 0.74
COPS3-201ENST00000268717 FRAT1Q92837 279 aaPredicted RBP19.67■□□□□ 0.74
COPS3-201ENST00000268717 KAT6BQ8WYB5 2073 aa19.67■□□□□ 0.74
COPS3-201ENST00000268717 CEMIPQ8WUJ3 1361 aa19.67■□□□□ 0.74
COPS3-201ENST00000268717 TWISTNBQ3B726 338 aaPredicted RBP19.66■□□□□ 0.74
COPS3-201ENST00000268717 SHANK3Q9BYB0 1731 aa19.66■□□□□ 0.74
COPS3-201ENST00000268717 APBA3O96018 575 aa19.65■□□□□ 0.74
COPS3-201ENST00000268717 ARHGAP45Q92619 1136 aa19.65■□□□□ 0.74
COPS3-201ENST00000268717 BCL2L13Q9BXK5 485 aa19.65■□□□□ 0.74
COPS3-201ENST00000268717 MEGF6O75095 1541 aa19.65■□□□□ 0.74
COPS3-201ENST00000268717 SOS1Q07889 1333 aaPredicted RBP19.65■□□□□ 0.74
COPS3-201ENST00000268717 AKAP4Q5JQC9 854 aa19.65■□□□□ 0.74
COPS3-201ENST00000268717 ATF7IPQ6VMQ6 1270 aa19.64■□□□□ 0.73
COPS3-201ENST00000268717 DZIP1LQ8IYY4 767 aaKnown RBP19.63■□□□□ 0.73
COPS3-201ENST00000268717 TSPYL6Q8N831 410 aa19.63■□□□□ 0.73
COPS3-201ENST00000268717 C8orf58Q8NAV2 365 aa19.63■□□□□ 0.73
COPS3-201ENST00000268717 CAMKK2Q96RR4 588 aa19.63■□□□□ 0.73
COPS3-201ENST00000268717 RREB1Q92766 1687 aa19.63■□□□□ 0.73
COPS3-201ENST00000268717 RGPD3A6NKT7 1758 aaPredicted RBP19.62■□□□□ 0.73
COPS3-201ENST00000268717 RGPD4Q7Z3J3 1758 aa19.62■□□□□ 0.73
COPS3-201ENST00000268717 EZH2Q15910 746 aaKnown RBP19.62■□□□□ 0.73
COPS3-201ENST00000268717 MRPL50Q8N5N7 158 aaKnown RBP19.62■□□□□ 0.73
COPS3-201ENST00000268717 IL17REQ8NFR9 667 aa19.62■□□□□ 0.73
COPS3-201ENST00000268717 PANK1Q8TE04 598 aa19.62■□□□□ 0.73
COPS3-201ENST00000268717 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.62■□□□□ 0.73
COPS3-201ENST00000268717 TSPYL4Q9UJ04 414 aa19.62■□□□□ 0.73
COPS3-201ENST00000268717 NHSQ6T4R5 1651 aa19.62■□□□□ 0.73
COPS3-201ENST00000268717 FTSJ3Q8IY81 847 aaKnown RBP19.62■□□□□ 0.73
COPS3-201ENST00000268717 BCL11BQ9C0K0 894 aaPredicted RBP19.62■□□□□ 0.73
COPS3-201ENST00000268717 TRIM27P14373 513 aa19.61■□□□□ 0.73
COPS3-201ENST00000268717 MVPQ14764 893 aaKnown RBP19.61■□□□□ 0.73
COPS3-201ENST00000268717 TAF7Q15545 349 aaPredicted RBP19.61■□□□□ 0.73
COPS3-201ENST00000268717 PTF1AQ7RTS3 328 aa19.61■□□□□ 0.73
COPS3-201ENST00000268717 NOB1Q9ULX3 412 aaKnown RBP19.61■□□□□ 0.73
COPS3-201ENST00000268717 RLBP1P12271 317 aa19.6■□□□□ 0.73
COPS3-201ENST00000268717 ZNF530Q6P9A1 599 aaPredicted RBP19.6■□□□□ 0.73
COPS3-201ENST00000268717 RAPGEF4Q8WZA2 1011 aa19.6■□□□□ 0.73
COPS3-201ENST00000268717 CLUAP1Q96AJ1 413 aa19.6■□□□□ 0.73
COPS3-201ENST00000268717 COG6Q9Y2V7 657 aa19.6■□□□□ 0.73
COPS3-201ENST00000268717 KDM2BQ8NHM5 1336 aa19.59■□□□□ 0.73
COPS3-201ENST00000268717 ZCRB1Q8TBF4 217 aaKnown RBP19.59■□□□□ 0.73
COPS3-201ENST00000268717 DDX54Q8TDD1 881 aaKnown RBP19.59■□□□□ 0.73
COPS3-201ENST00000268717 NUP188Q5SRE5 1749 aa19.58■□□□□ 0.73
COPS3-201ENST00000268717 TATP17735 454 aaPredicted RBP19.58■□□□□ 0.73
COPS3-201ENST00000268717 C1orf141Q5JVX7 400 aa19.58■□□□□ 0.73
COPS3-201ENST00000268717 CENPQQ7L2Z9 268 aaPredicted RBP19.58■□□□□ 0.73
COPS3-201ENST00000268717 PKD1L3Q7Z443 1732 aa19.57■□□□□ 0.72
COPS3-201ENST00000268717 ADAMTS7Q9UKP4 1686 aa19.57■□□□□ 0.72
COPS3-201ENST00000268717 PLSCR1O15162 318 aa19.57■□□□□ 0.72
COPS3-201ENST00000268717 DDX19BQ9UMR2 479 aa19.57■□□□□ 0.72
COPS3-201ENST00000268717 BTAF1O14981 1849 aa19.56■□□□□ 0.72
COPS3-201ENST00000268717 KCNQ2O43526 872 aa19.56■□□□□ 0.72
COPS3-201ENST00000268717 ACSBG1Q96GR2 724 aa19.56■□□□□ 0.72
COPS3-201ENST00000268717 DOT1LQ8TEK3 1739 aa19.56■□□□□ 0.72
COPS3-201ENST00000268717 TNNQ9UQP3 1299 aa19.55■□□□□ 0.72
COPS3-201ENST00000268717 SRCAPQ6ZRS2 3230 aa19.55■□□□□ 0.72
COPS3-201ENST00000268717 ELL2O00472 640 aaPredicted RBP19.54■□□□□ 0.72
COPS3-201ENST00000268717 CHMP4AQ9BY43 222 aa19.54■□□□□ 0.72
COPS3-201ENST00000268717 API5Q9BZZ5 524 aaKnown RBP19.54■□□□□ 0.72
COPS3-201ENST00000268717 CHMP4BQ9H444 224 aaKnown RBP19.54■□□□□ 0.72
COPS3-201ENST00000268717 MIS18AQ9NYP9 233 aa19.54■□□□□ 0.72
COPS3-201ENST00000268717 SPG7Q9UQ90 795 aa19.54■□□□□ 0.72
COPS3-201ENST00000268717 ABCC4O15439 1325 aa19.53■□□□□ 0.72
COPS3-201ENST00000268717 RNMTO43148 476 aaKnown RBP19.53■□□□□ 0.72
COPS3-201ENST00000268717 HOXB7P09629 217 aa19.53■□□□□ 0.72
COPS3-201ENST00000268717 PTPRCP08575 1304 aa19.52■□□□□ 0.72
COPS3-201ENST00000268717 PCDH11XQ9BZA7 1347 aa19.52■□□□□ 0.72
COPS3-201ENST00000268717 PCDH11YQ9BZA8 1340 aa19.52■□□□□ 0.72
COPS3-201ENST00000268717 TEFQ10587 303 aa19.52■□□□□ 0.72
COPS3-201ENST00000268717 KRT24Q2M2I5 525 aa19.51■□□□□ 0.71
COPS3-201ENST00000268717 TSHZ2Q9NRE2 1034 aa19.51■□□□□ 0.71
COPS3-201ENST00000268717 LGR6Q9HBX8 967 aa19.51■□□□□ 0.71
COPS3-201ENST00000268717 KDM3BQ7LBC6 1761 aa19.5■□□□□ 0.71
COPS3-201ENST00000268717 VIRMAQ69YN4 1812 aaKnown RBP19.5■□□□□ 0.71
COPS3-201ENST00000268717 ITPRIPQ8IWB1 547 aa19.5■□□□□ 0.71
COPS3-201ENST00000268717 TMEM57Q8N5G2 664 aa19.5■□□□□ 0.71
COPS3-201ENST00000268717 CYP27B1O15528 508 aa19.49■□□□□ 0.71
COPS3-201ENST00000268717 HSP90AB1P08238 724 aaKnown RBP19.49■□□□□ 0.71
COPS3-201ENST00000268717 PHKG2P15735 406 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms