RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 GAS2L2Q8NHY3 880 aa16.09■□□□□ 0.17
CPSF6-201ENST00000266679 QTRT2Q9H974 415 aaKnown RBP16.09■□□□□ 0.17
CPSF6-201ENST00000266679 FAM208AQ9UK61 1670 aaKnown RBP16.09■□□□□ 0.17
CPSF6-201ENST00000266679 LTN1O94822 1766 aa16.09■□□□□ 0.17
CPSF6-201ENST00000266679 SLC4A2P04920 1241 aa16.09■□□□□ 0.17
CPSF6-201ENST00000266679 HOXC9P31274 260 aa16.09■□□□□ 0.17
CPSF6-201ENST00000266679 HSCBQ8IWL3 235 aa16.08■□□□□ 0.16
CPSF6-201ENST00000266679 SPATA31A3Q5VYP0 1347 aa16.08■□□□□ 0.16
CPSF6-201ENST00000266679 RBM25P49756 843 aaKnown RBP16.07■□□□□ 0.16
CPSF6-201ENST00000266679 ANKRD44Q8N8A2 993 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 LTV1Q96GA3 475 aaPredicted RBP16.07■□□□□ 0.16
CPSF6-201ENST00000266679 TRPM3Q9HCF6 1732 aaPredicted RBP16.07■□□□□ 0.16
CPSF6-201ENST00000266679 TNS3Q68CZ2 1445 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 RTL1A6NKG5 1358 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 TBC1D9Q6ZT07 1266 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 ABTB2Q8N961 1025 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 CABLES1Q8TDN4 633 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 MEIS3Q99687 375 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 DCTPP1Q9H773 170 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 USP21Q9UK80 565 aa16.07■□□□□ 0.16
CPSF6-201ENST00000266679 CEP85Q6P2H3 762 aa16.06■□□□□ 0.16
CPSF6-201ENST00000266679 LMOD2Q6P5Q4 547 aa16.06■□□□□ 0.16
CPSF6-201ENST00000266679 G2E3Q7L622 706 aa16.06■□□□□ 0.16
CPSF6-201ENST00000266679 GSPT1P15170 499 aaKnown RBP16.04■□□□□ 0.16
CPSF6-201ENST00000266679 SLC4A10Q6U841 1118 aa16.04■□□□□ 0.16
CPSF6-201ENST00000266679 PLEKHM2Q8IWE5 1019 aa16.04■□□□□ 0.16
CPSF6-201ENST00000266679 F6X3S4 739 aa16.04■□□□□ 0.16
CPSF6-201ENST00000266679 APBB1O00213 710 aa16.04■□□□□ 0.16
CPSF6-201ENST00000266679 PLCH1Q4KWH8 1693 aa16.04■□□□□ 0.16
CPSF6-201ENST00000266679 CDC45O75419 566 aa16.03■□□□□ 0.16
CPSF6-201ENST00000266679 RBM6P78332 1123 aaKnown RBP16.03■□□□□ 0.16
CPSF6-201ENST00000266679 PSME1Q06323 249 aa16.03■□□□□ 0.16
CPSF6-201ENST00000266679 RPAP2Q8IXW5 612 aaPredicted RBP16.03■□□□□ 0.16
CPSF6-201ENST00000266679 C16orf71Q8IYS4 520 aaPredicted RBP16.03■□□□□ 0.16
CPSF6-201ENST00000266679 USHBP1Q8N6Y0 703 aa16.03■□□□□ 0.16
CPSF6-201ENST00000266679 ALS2Q96Q42 1657 aa16.03■□□□□ 0.16
CPSF6-201ENST00000266679 BCL9LQ86UU0 1499 aa16.03■□□□□ 0.16
CPSF6-201ENST00000266679 GNAT3A8MTJ3 354 aa16.03■□□□□ 0.16
CPSF6-201ENST00000266679 MAP3K5Q99683 1374 aa16.03■□□□□ 0.16
CPSF6-201ENST00000266679 SMARCA5O60264 1052 aaPredicted RBP16.02■□□□□ 0.16
CPSF6-201ENST00000266679 FNBP4Q8N3X1 1017 aaPredicted RBP16.02■□□□□ 0.16
CPSF6-201ENST00000266679 ATRNO75882 1429 aa16.02■□□□□ 0.15
CPSF6-201ENST00000266679 TTC22Q5TAA0 569 aa16.02■□□□□ 0.15
CPSF6-201ENST00000266679 OTUD7AQ8TE49 926 aaPredicted RBP16.02■□□□□ 0.15
CPSF6-201ENST00000266679 NECTIN2Q92692 538 aa16.02■□□□□ 0.15
CPSF6-201ENST00000266679 STK31Q9BXU1 1019 aa16.02■□□□□ 0.15
CPSF6-201ENST00000266679 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.01■□□□□ 0.15
CPSF6-201ENST00000266679 HTATSF1O43719 755 aaKnown RBP16.01■□□□□ 0.15
CPSF6-201ENST00000266679 UPF1Q92900 1129 aaKnown RBP eCLIP16.01■□□□□ 0.15
CPSF6-201ENST00000266679 CHMP5Q9NZZ3 219 aa16.01■□□□□ 0.15
CPSF6-201ENST00000266679 RGPD2P0DJD1 1756 aa16■□□□□ 0.15
CPSF6-201ENST00000266679 CCT4P50991 539 aaKnown RBP16■□□□□ 0.15
CPSF6-201ENST00000266679 SNX21Q969T3 373 aa16■□□□□ 0.15
CPSF6-201ENST00000266679 KIF2CQ99661 725 aa16■□□□□ 0.15
CPSF6-201ENST00000266679 CRYBG1Q9Y4K1 1723 aa16■□□□□ 0.15
CPSF6-201ENST00000266679 NFAT5O94916 1531 aa16■□□□□ 0.15
CPSF6-201ENST00000266679 ZBTB7CA1YPR0 619 aa15.99■□□□□ 0.15
CPSF6-201ENST00000266679 TRPC5Q9UL62 973 aaPredicted RBP15.99■□□□□ 0.15
CPSF6-201ENST00000266679 SRCAPQ6ZRS2 3230 aa15.99■□□□□ 0.15
CPSF6-201ENST00000266679 N4BP2Q86UW6 1770 aaPredicted RBP15.99■□□□□ 0.15
CPSF6-201ENST00000266679 HSP90AB1P08238 724 aaKnown RBP15.99■□□□□ 0.15
CPSF6-201ENST00000266679 IL27Q8NEV9 243 aa15.99■□□□□ 0.15
CPSF6-201ENST00000266679 IL17REQ8NFR9 667 aa15.99■□□□□ 0.15
CPSF6-201ENST00000266679 SLIT2O94813 1529 aa15.98■□□□□ 0.15
CPSF6-201ENST00000266679 GLI3P10071 1580 aa15.98■□□□□ 0.15
CPSF6-201ENST00000266679 CACNA1FO60840 1977 aa15.98■□□□□ 0.15
CPSF6-201ENST00000266679 FLIIQ13045 1269 aa15.98■□□□□ 0.15
CPSF6-201ENST00000266679 CCDC30Q5VVM6 783 aa15.98■□□□□ 0.15
CPSF6-201ENST00000266679 HMMRO75330 724 aa15.97■□□□□ 0.15
CPSF6-201ENST00000266679 FKBP5Q13451 457 aaPredicted RBP15.97■□□□□ 0.15
CPSF6-201ENST00000266679 BRWD3Q6RI45 1802 aa15.97■□□□□ 0.15
CPSF6-201ENST00000266679 BRPF3Q9ULD4 1205 aa15.96■□□□□ 0.15
CPSF6-201ENST00000266679 CD2BP2O95400 341 aaKnown RBP15.96■□□□□ 0.15
CPSF6-201ENST00000266679 MCM4P33991 863 aa15.96■□□□□ 0.15
CPSF6-201ENST00000266679 TAF7Q15545 349 aaPredicted RBP15.96■□□□□ 0.15
CPSF6-201ENST00000266679 RBM42Q9BTD8 480 aaKnown RBP15.96■□□□□ 0.15
CPSF6-201ENST00000266679 NWD2Q9ULI1 1742 aa15.96■□□□□ 0.14
CPSF6-201ENST00000266679 GNAI2P04899 355 aa15.95■□□□□ 0.14
CPSF6-201ENST00000266679 SDSP20132 328 aa15.95■□□□□ 0.14
CPSF6-201ENST00000266679 IP6K1Q92551 441 aa15.95■□□□□ 0.14
CPSF6-201ENST00000266679 NRAPQ86VF7 1730 aa15.95■□□□□ 0.14
CPSF6-201ENST00000266679 PHRF1Q9P1Y6 1649 aaKnown RBP15.94■□□□□ 0.14
CPSF6-201ENST00000266679 UNC5CLQ8IV45 518 aa15.94■□□□□ 0.14
CPSF6-201ENST00000266679 FOXD4L1Q9NU39 408 aa15.94■□□□□ 0.14
CPSF6-201ENST00000266679 DDIT3P35638 169 aa15.93■□□□□ 0.14
CPSF6-201ENST00000266679 NBPF6Q5VWK0 638 aa15.93■□□□□ 0.14
CPSF6-201ENST00000266679 NBPF4Q96M43 638 aa15.93■□□□□ 0.14
CPSF6-201ENST00000266679 KDM3BQ7LBC6 1761 aa15.93■□□□□ 0.14
CPSF6-201ENST00000266679 GJD4Q96KN9 370 aaPredicted RBP15.92■□□□□ 0.14
CPSF6-201ENST00000266679 EXOC6BQ9Y2D4 811 aa15.92■□□□□ 0.14
CPSF6-201ENST00000266679 LMO7Q8WWI1 1683 aa15.92■□□□□ 0.14
CPSF6-201ENST00000266679 K7ELQ4 463 aaPredicted RBP15.92■□□□□ 0.14
CPSF6-201ENST00000266679 PXDNLA1KZ92 1463 aa15.92■□□□□ 0.14
CPSF6-201ENST00000266679 TUBGCP6Q96RT7 1819 aa15.91■□□□□ 0.14
CPSF6-201ENST00000266679 HSP90AA1P07900 732 aaKnown RBP15.91■□□□□ 0.14
CPSF6-201ENST00000266679 HDGFL1Q5TGJ6 251 aa15.91■□□□□ 0.14
CPSF6-201ENST00000266679 BABAM1Q9NWV8 329 aa15.91■□□□□ 0.14
CPSF6-201ENST00000266679 SOS1Q07889 1333 aaPredicted RBP15.91■□□□□ 0.14
CPSF6-201ENST00000266679 EIF5BO60841 1220 aaKnown RBP15.91■□□□□ 0.14
CPSF6-201ENST00000266679 GNAI3P08754 354 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms