RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 HDGFL1Q5TGJ6 251 aa20.93■□□□□ 0.94
USP4-201ENST00000265560 STK31Q9BXU1 1019 aa20.93■□□□□ 0.94
USP4-201ENST00000265560 PHAXQ9H814 394 aaKnown RBP20.92■□□□□ 0.94
USP4-201ENST00000265560 COL5A2P05997 1499 aaPredicted RBP20.92■□□□□ 0.94
USP4-201ENST00000265560 UBAP1LF5GYI3 381 aa20.92■□□□□ 0.94
USP4-201ENST00000265560 ZBTB7BO15156 539 aaPredicted RBP20.91■□□□□ 0.94
USP4-201ENST00000265560 IFNL2Q8IZJ0 200 aa20.91■□□□□ 0.94
USP4-201ENST00000265560 ARHGAP45Q92619 1136 aa20.91■□□□□ 0.94
USP4-201ENST00000265560 LRRC37A3O60309 1634 aa20.91■□□□□ 0.94
USP4-201ENST00000265560 FAM208AQ9UK61 1670 aaKnown RBP20.91■□□□□ 0.94
USP4-201ENST00000265560 FKBP5Q13451 457 aaPredicted RBP20.91■□□□□ 0.94
USP4-201ENST00000265560 API5Q9BZZ5 524 aaKnown RBP20.91■□□□□ 0.94
USP4-201ENST00000265560 ABCC4O15439 1325 aa20.9■□□□□ 0.94
USP4-201ENST00000265560 VIRMAQ69YN4 1812 aaKnown RBP20.9■□□□□ 0.94
USP4-201ENST00000265560 CCDC30Q5VVM6 783 aa20.9■□□□□ 0.94
USP4-201ENST00000265560 CHPF2Q9P2E5 772 aa20.89■□□□□ 0.93
USP4-201ENST00000265560 KDM6AO15550 1401 aaPredicted RBP20.89■□□□□ 0.93
USP4-201ENST00000265560 ABCA3Q99758 1704 aa20.88■□□□□ 0.93
USP4-201ENST00000265560 LMO7Q8WWI1 1683 aa20.88■□□□□ 0.93
USP4-201ENST00000265560 FLIIQ13045 1269 aa20.88■□□□□ 0.93
USP4-201ENST00000265560 ZCRB1Q8TBF4 217 aaKnown RBP20.88■□□□□ 0.93
USP4-201ENST00000265560 PIP4K2AP48426 406 aaPredicted RBP20.87■□□□□ 0.93
USP4-201ENST00000265560 AEBP2Q6ZN18 517 aaPredicted RBP20.87■□□□□ 0.93
USP4-201ENST00000265560 TOM1O60784 492 aa20.87■□□□□ 0.93
USP4-201ENST00000265560 RWDD1Q9H446 243 aaPredicted RBP20.87■□□□□ 0.93
USP4-201ENST00000265560 SLC52A2Q9HAB3 445 aa20.87■□□□□ 0.93
USP4-201ENST00000265560 RGS12O14924 1447 aa20.86■□□□□ 0.93
USP4-201ENST00000265560 IL2RBP14784 551 aa20.86■□□□□ 0.93
USP4-201ENST00000265560 PROSER3Q2NL68 480 aa20.85■□□□□ 0.93
USP4-201ENST00000265560 MEIS3Q99687 375 aa20.85■□□□□ 0.93
USP4-201ENST00000265560 CARD10Q9BWT7 1032 aa20.85■□□□□ 0.93
USP4-201ENST00000265560 PDZRN3Q9UPQ7 1066 aa20.85■□□□□ 0.93
USP4-201ENST00000265560 ZNF790Q6PG37 636 aa20.84■□□□□ 0.93
USP4-201ENST00000265560 GIGYF1O75420 1035 aaPredicted RBP20.83■□□□□ 0.93
USP4-201ENST00000265560 CABP4P57796 275 aa20.83■□□□□ 0.93
USP4-201ENST00000265560 ZNF496Q96IT1 587 aaPredicted RBP20.83■□□□□ 0.93
USP4-201ENST00000265560 DCAF5Q96JK2 942 aa20.83■□□□□ 0.92
USP4-201ENST00000265560 BABAM1Q9NWV8 329 aa20.83■□□□□ 0.92
USP4-201ENST00000265560 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.83■□□□□ 0.922e-6■■■□□ 16.6
USP4-201ENST00000265560 SIRT2Q8IXJ6 389 aa20.82■□□□□ 0.92
USP4-201ENST00000265560 PTPRCP08575 1304 aa20.82■□□□□ 0.92
USP4-201ENST00000265560 PDE4AP27815 886 aa20.82■□□□□ 0.92
USP4-201ENST00000265560 INTS3Q68E01 1043 aaKnown RBP20.81■□□□□ 0.92
USP4-201ENST00000265560 OVOS2A0A0G2JMS6 1433 aa20.81■□□□□ 0.92
USP4-201ENST00000265560 AIMP1Q12904 312 aaKnown RBP20.81■□□□□ 0.92
USP4-201ENST00000265560 AAMPQ13685 434 aa20.8■□□□□ 0.92
USP4-201ENST00000265560 MYL6BP14649 208 aa20.79■□□□□ 0.92
USP4-201ENST00000265560 CCDC9Q9Y3X0 531 aaKnown RBP20.79■□□□□ 0.92
USP4-201ENST00000265560 PHLPP1O60346 1717 aa20.79■□□□□ 0.92
USP4-201ENST00000265560 APBB1O00213 710 aa20.79■□□□□ 0.92
USP4-201ENST00000265560 PTCD1O75127 700 aaKnown RBP20.79■□□□□ 0.92
USP4-201ENST00000265560 NPM2Q86SE8 214 aaKnown RBP20.79■□□□□ 0.92
USP4-201ENST00000265560 KDM3BQ7LBC6 1761 aa20.79■□□□□ 0.92
USP4-201ENST00000265560 A0A0G2JS52 829 aa20.78■□□□□ 0.92
USP4-201ENST00000265560 PI4KAP2A4QPH2 592 aa20.78■□□□□ 0.92
USP4-201ENST00000265560 TTC5Q8N0Z6 440 aa20.78■□□□□ 0.92
USP4-201ENST00000265560 PI4KAP1Q8N8J0 262 aa20.78■□□□□ 0.92
USP4-201ENST00000265560 USP16Q9Y5T5 823 aa20.78■□□□□ 0.92
USP4-201ENST00000265560 PCDH11XQ9BZA7 1347 aa20.78■□□□□ 0.92
USP4-201ENST00000265560 PCDH11YQ9BZA8 1340 aa20.78■□□□□ 0.92
USP4-201ENST00000265560 LNPKQ9C0E8 428 aa20.77■□□□□ 0.92
USP4-201ENST00000265560 SCN11AQ9UI33 1791 aa20.77■□□□□ 0.92
USP4-201ENST00000265560 AHDC1Q5TGY3 1603 aaPredicted RBP20.77■□□□□ 0.91
USP4-201ENST00000265560 HDAC1Q13547 482 aaPredicted RBP20.76■□□□□ 0.91
USP4-201ENST00000265560 ABCC6O95255 1503 aa20.75■□□□□ 0.91
USP4-201ENST00000265560 SYTL4Q96C24 671 aaPredicted RBP20.74■□□□□ 0.91
USP4-201ENST00000265560 HSP90AB1P08238 724 aaKnown RBP20.74■□□□□ 0.91
USP4-201ENST00000265560 ANKRD45Q5TZF3 282 aa20.73■□□□□ 0.91
USP4-201ENST00000265560 BACH2Q9BYV9 841 aa20.73■□□□□ 0.91
USP4-201ENST00000265560 DBF4Q9UBU7 674 aaPredicted RBP20.73■□□□□ 0.91
USP4-201ENST00000265560 C8orf37Q96NL8 207 aa20.73■□□□□ 0.91
USP4-201ENST00000265560 COL16A1Q07092 1604 aaPredicted RBP20.73■□□□□ 0.91
USP4-201ENST00000265560 SIPA1L3O60292 1781 aaPredicted RBP20.73■□□□□ 0.91
USP4-201ENST00000265560 PKD1L3Q7Z443 1732 aa20.72■□□□□ 0.91
USP4-201ENST00000265560 CCT4P50991 539 aaKnown RBP20.71■□□□□ 0.91
USP4-201ENST00000265560 SMC5Q8IY18 1101 aa20.71■□□□□ 0.91
USP4-201ENST00000265560 HEG1Q9ULI3 1381 aa20.71■□□□□ 0.91
USP4-201ENST00000265560 HOXB7P09629 217 aa20.7■□□□□ 0.9
USP4-201ENST00000265560 PDIA6Q15084 440 aa20.7■□□□□ 0.9
USP4-201ENST00000265560 MAP3K2Q9Y2U5 619 aa20.7■□□□□ 0.9
USP4-201ENST00000265560 CEP85Q6P2H3 762 aa20.7■□□□□ 0.9
USP4-201ENST00000265560 FMNL2Q96PY5 1086 aa20.69■□□□□ 0.9
USP4-201ENST00000265560 CHMP4BQ9H444 224 aaKnown RBP20.69■□□□□ 0.9
USP4-201ENST00000265560 CWF19L2Q2TBE0 894 aaKnown RBP20.69■□□□□ 0.9
USP4-201ENST00000265560 DNAAF4Q8WXU2 420 aa20.69■□□□□ 0.9
USP4-201ENST00000265560 ASAP1Q9ULH1 1129 aa20.69■□□□□ 0.9
USP4-201ENST00000265560 NGLY1Q96IV0 654 aa20.69■□□□□ 0.9
USP4-201ENST00000265560 USP44Q9H0E7 712 aa20.69■□□□□ 0.9
USP4-201ENST00000265560 PARP4Q9UKK3 1724 aaKnown RBP20.68■□□□□ 0.9
USP4-201ENST00000265560 CACNA1FO60840 1977 aa20.68■□□□□ 0.9
USP4-201ENST00000265560 ADAMTS7Q9UKP4 1686 aa20.68■□□□□ 0.9
USP4-201ENST00000265560 EXOC5O00471 708 aa20.68■□□□□ 0.9
USP4-201ENST00000265560 SNRPA1P09661 255 aaKnown RBP20.68■□□□□ 0.9
USP4-201ENST00000265560 SOS1Q07889 1333 aaPredicted RBP20.68■□□□□ 0.9
USP4-201ENST00000265560 NBPF7P0C2Y1 421 aaPredicted RBP20.68■□□□□ 0.9
USP4-201ENST00000265560 C8orf34Q49A92 452 aa20.68■□□□□ 0.9
USP4-201ENST00000265560 LRRFIP2Q9Y608 721 aaKnown RBP20.68■□□□□ 0.9
USP4-201ENST00000265560 ZNF330Q9Y3S2 320 aaPredicted RBP20.67■□□□□ 0.9
USP4-201ENST00000265560 ADCY9O60503 1353 aa20.67■□□□□ 0.9
USP4-201ENST00000265560 SMARCA5O60264 1052 aaPredicted RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms