RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 SMTNL1A8MU46 457 aa19.3■□□□□ 0.68
GPC1-201ENST00000264039 C14orf37Q86TY3 774 aa19.3■□□□□ 0.68
GPC1-201ENST00000264039 UBXN4Q92575 508 aa19.3■□□□□ 0.68
GPC1-201ENST00000264039 DNAJC2Q99543 621 aaKnown RBP19.3■□□□□ 0.68
GPC1-201ENST00000264039 RTEL1-TNFRSF6BF6WH68 1400 aa19.3■□□□□ 0.68
GPC1-201ENST00000264039 FCHSD2O94868 740 aa19.3■□□□□ 0.68
GPC1-201ENST00000264039 TYRO3Q06418 890 aa19.3■□□□□ 0.68
GPC1-201ENST00000264039 NCBP1Q09161 790 aaKnown RBP19.3■□□□□ 0.68
GPC1-201ENST00000264039 PTPRGP23470 1445 aa19.3■□□□□ 0.68
GPC1-201ENST00000264039 POLR1AO95602 1720 aaPredicted RBP19.3■□□□□ 0.68
GPC1-201ENST00000264039 GNAI2P04899 355 aa19.29■□□□□ 0.68
GPC1-201ENST00000264039 PRPF40BQ6NWY9 871 aaKnown RBP19.29■□□□□ 0.68
GPC1-201ENST00000264039 ANKRD44Q8N8A2 993 aa19.29■□□□□ 0.68
GPC1-201ENST00000264039 TSPYL4Q9UJ04 414 aa19.29■□□□□ 0.68
GPC1-201ENST00000264039 WDR62O43379 1518 aa19.29■□□□□ 0.68
GPC1-201ENST00000264039 ARHGAP5Q13017 1502 aa19.29■□□□□ 0.68
GPC1-201ENST00000264039 F13A1P00488 732 aa19.29■□□□□ 0.68
GPC1-201ENST00000264039 PDRG1Q9NUG6 133 aa19.28■□□□□ 0.68
GPC1-201ENST00000264039 CEP85Q6P2H3 762 aa19.28■□□□□ 0.68
GPC1-201ENST00000264039 LIMCH1Q9UPQ0 1083 aa19.28■□□□□ 0.68
GPC1-201ENST00000264039 PAXBP1Q9Y5B6 917 aa19.28■□□□□ 0.68
GPC1-201ENST00000264039 CCDC141Q6ZP82 1450 aa19.28■□□□□ 0.68
GPC1-201ENST00000264039 SAMD9Q5K651 1589 aa19.27■□□□□ 0.68
GPC1-201ENST00000264039 URI1O94763 535 aaPredicted RBP19.27■□□□□ 0.68
GPC1-201ENST00000264039 CYP2E1P05181 493 aaPredicted RBP19.27■□□□□ 0.68
GPC1-201ENST00000264039 TMCO3Q6UWJ1 677 aa19.27■□□□□ 0.68
GPC1-201ENST00000264039 TMEM51Q9NW97 253 aa19.27■□□□□ 0.68
GPC1-201ENST00000264039 USP16Q9Y5T5 823 aa19.27■□□□□ 0.68
GPC1-201ENST00000264039 AK2P54819 239 aa19.27■□□□□ 0.68
GPC1-201ENST00000264039 ZNF397Q8NF99 534 aaPredicted RBP19.27■□□□□ 0.68
GPC1-201ENST00000264039 NCOA3Q9Y6Q9 1424 aa19.27■□□□□ 0.68
GPC1-201ENST00000264039 IRX5P78411 483 aaPredicted RBP19.27■□□□□ 0.67
GPC1-201ENST00000264039 GABPB1Q06547 395 aaPredicted RBP19.27■□□□□ 0.67
GPC1-201ENST00000264039 SULT6B1Q6IMI4 303 aa19.27■□□□□ 0.67
GPC1-201ENST00000264039 ZSWIM4Q9H7M6 989 aa19.27■□□□□ 0.67
GPC1-201ENST00000264039 CLEC17AQ6ZS10 378 aa19.26■□□□□ 0.67
GPC1-201ENST00000264039 NEK11Q8NG66 645 aa19.26■□□□□ 0.67
GPC1-201ENST00000264039 AEBP2Q6ZN18 517 aaPredicted RBP19.26■□□□□ 0.67
GPC1-201ENST00000264039 CCDC73Q6ZRK6 1079 aa19.26■□□□□ 0.67
GPC1-201ENST00000264039 PRAM1Q96QH2 718 aa19.26■□□□□ 0.67
GPC1-201ENST00000264039 CYP46A1Q9Y6A2 500 aa19.26■□□□□ 0.67
GPC1-201ENST00000264039 MAGI1Q96QZ7 1491 aaPredicted RBP19.26■□□□□ 0.67
GPC1-201ENST00000264039 A0A087WWV3 80 aa19.25■□□□□ 0.67
GPC1-201ENST00000264039 IRX3P78415 501 aaPredicted RBP19.25■□□□□ 0.67
GPC1-201ENST00000264039 CREBRFQ8IUR6 639 aa19.25■□□□□ 0.67
GPC1-201ENST00000264039 GPATCH11Q8N954 259 aa19.25■□□□□ 0.67
GPC1-201ENST00000264039 LTV1Q96GA3 475 aaPredicted RBP19.25■□□□□ 0.67
GPC1-201ENST00000264039 CCDC34Q96HJ3 373 aa19.25■□□□□ 0.67
GPC1-201ENST00000264039 APPP05067 770 aa19.25■□□□□ 0.67
GPC1-201ENST00000264039 TTLL5Q6EMB2 1281 aa19.25■□□□□ 0.67
GPC1-201ENST00000264039 FYB1O15117 783 aa19.24■□□□□ 0.67
GPC1-201ENST00000264039 ERCC4Q92889 916 aaPredicted RBP19.24■□□□□ 0.67
GPC1-201ENST00000264039 LMAN1P49257 510 aa19.24■□□□□ 0.67
GPC1-201ENST00000264039 PDILTQ8N807 584 aa19.24■□□□□ 0.67
GPC1-201ENST00000264039 IPO4Q8TEX9 1081 aaKnown RBP19.24■□□□□ 0.67
GPC1-201ENST00000264039 LRRIQ1Q96JM4 1722 aa19.24■□□□□ 0.67
GPC1-201ENST00000264039 NPC1L1Q9UHC9 1359 aa19.24■□□□□ 0.67
GPC1-201ENST00000264039 UBTFL1P0CB47 393 aaPredicted RBP19.24■□□□□ 0.67
GPC1-201ENST00000264039 BMS1Q14692 1282 aaKnown RBP19.24■□□□□ 0.67
GPC1-201ENST00000264039 ERCC6LQ2NKX8 1250 aa19.24■□□□□ 0.67
GPC1-201ENST00000264039 ISM2Q6H9L7 571 aa19.24■□□□□ 0.67
GPC1-201ENST00000264039 ABCC2Q92887 1545 aa19.23■□□□□ 0.67
GPC1-201ENST00000264039 KINO60870 393 aaKnown RBP19.23■□□□□ 0.67
GPC1-201ENST00000264039 ARHGAP29Q52LW3 1261 aa19.23■□□□□ 0.67
GPC1-201ENST00000264039 KCNF1Q9H3M0 494 aa19.23■□□□□ 0.67
GPC1-201ENST00000264039 ARID5BQ14865 1188 aa19.23■□□□□ 0.67
GPC1-201ENST00000264039 GOLGA6L1Q8N7Z2 621 aa19.23■□□□□ 0.67
GPC1-201ENST00000264039 CBX8Q9HC52 389 aa19.23■□□□□ 0.67
GPC1-201ENST00000264039 SYT10Q6XYQ8 523 aa19.22■□□□□ 0.67
GPC1-201ENST00000264039 BIN1O00499 593 aa19.22■□□□□ 0.67
GPC1-201ENST00000264039 LIG1P18858 919 aa19.22■□□□□ 0.67
GPC1-201ENST00000264039 CHMLP26374 656 aa19.22■□□□□ 0.67
GPC1-201ENST00000264039 CNTROBQ8N137 903 aa19.22■□□□□ 0.67
GPC1-201ENST00000264039 TERF2Q15554 542 aa19.22■□□□□ 0.67
GPC1-201ENST00000264039 COG3Q96JB2 828 aa19.22■□□□□ 0.67
GPC1-201ENST00000264039 SLU7O95391 586 aaKnown RBP19.21■□□□□ 0.67
GPC1-201ENST00000264039 SNW1Q13573 536 aaKnown RBP19.21■□□□□ 0.67
GPC1-201ENST00000264039 ZSCAN25Q6NSZ9 544 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 INTS4Q96HW7 963 aaKnown RBP19.21■□□□□ 0.67
GPC1-201ENST00000264039 CCDC69A6NI79 296 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 TPM4P67936 248 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 GUCY1B3Q02153 619 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 ARHGAP45Q92619 1136 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 CTNNA3Q9UI47 895 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 ME1P48163 572 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 RUFY2Q8WXA3 655 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 LRRFIP2Q9Y608 721 aaKnown RBP19.21■□□□□ 0.67
GPC1-201ENST00000264039 IL16Q14005 1332 aa19.21■□□□□ 0.67
GPC1-201ENST00000264039 PLA2R1Q13018 1463 aa19.21■□□□□ 0.66
GPC1-201ENST00000264039 VGFO15240 615 aaPredicted RBP19.2■□□□□ 0.66
GPC1-201ENST00000264039 CACTINQ8WUQ7 758 aaKnown RBP19.2■□□□□ 0.66
GPC1-201ENST00000264039 DNAI1Q9UI46 699 aa19.2■□□□□ 0.66
GPC1-201ENST00000264039 RAB11FIP3O75154 756 aa19.2■□□□□ 0.66
GPC1-201ENST00000264039 IFIT2P09913 472 aaKnown RBP19.2■□□□□ 0.66
GPC1-201ENST00000264039 STK11IPQ8N1F8 1099 aa19.2■□□□□ 0.66
GPC1-201ENST00000264039 RSPH14Q9UHP6 348 aa19.2■□□□□ 0.66
GPC1-201ENST00000264039 ADGRL2O95490 1459 aa19.19■□□□□ 0.66
GPC1-201ENST00000264039 IFT140Q96RY7 1462 aa19.19■□□□□ 0.66
GPC1-201ENST00000264039 KRBA2Q6ZNG9 492 aa19.19■□□□□ 0.66
GPC1-201ENST00000264039 CCDC191Q8NCU4 936 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms