RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 TULP4Q9NRJ4 1543 aa8.68□□□□□ -1.02
CSDE1-201ENST00000261443 CCDC112Q8NEF3 446 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 ERICH4A6NGS2 130 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 GLI2P10070 1586 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 TNNT1P13805 278 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 IFT57Q9NWB7 429 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 CALCOCO1Q9P1Z2 691 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 DIAPH1O60610 1272 aaKnown RBP8.67□□□□□ -1.02
CSDE1-201ENST00000261443 ANKRD44Q8N8A2 993 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 GGNBP2Q9H3C7 697 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 PAXBP1Q9Y5B6 917 aa8.67□□□□□ -1.02
CSDE1-201ENST00000261443 KNDC1Q76NI1 1749 aa8.66□□□□□ -1.02
CSDE1-201ENST00000261443 SLC20A2Q08357 652 aa8.66□□□□□ -1.02
CSDE1-201ENST00000261443 FUCA2Q9BTY2 467 aa8.66□□□□□ -1.02
CSDE1-201ENST00000261443 THUMPD2Q9BTF0 503 aaKnown RBP8.66□□□□□ -1.02
CSDE1-201ENST00000261443 PALD1Q9ULE6 856 aa8.66□□□□□ -1.02
CSDE1-201ENST00000261443 FIBPO43427 364 aa8.65□□□□□ -1.02
CSDE1-201ENST00000261443 TWISTNBQ3B726 338 aaPredicted RBP8.65□□□□□ -1.02
CSDE1-201ENST00000261443 RPAP2Q8IXW5 612 aaPredicted RBP8.65□□□□□ -1.02
CSDE1-201ENST00000261443 DRC7Q8IY82 874 aa8.65□□□□□ -1.02
CSDE1-201ENST00000261443 UPF3BQ9BZI7 483 aaKnown RBP8.65□□□□□ -1.02
CSDE1-201ENST00000261443 COL3A1P02461 1466 aaPredicted RBP8.65□□□□□ -1.02
CSDE1-201ENST00000261443 RPAP1Q9BWH6 1393 aaPredicted RBP8.65□□□□□ -1.02
CSDE1-201ENST00000261443 EVC2Q86UK5 1308 aa8.65□□□□□ -1.02
CSDE1-201ENST00000261443 RTL1A6NKG5 1358 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 CCDC192P0DO97 292 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 ANAPC15P60006 121 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 GNAI1P63096 354 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 LRMPQ12912 555 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 TMEM132EQ6IEE7 984 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 CCDC186Q7Z3E2 898 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 ZNF397Q8NF99 534 aaPredicted RBP8.65□□□□□ -1.03
CSDE1-201ENST00000261443 ZNF592Q92610 1267 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 ESYT1Q9BSJ8 1104 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 ANO2Q9NQ90 1003 aa8.65□□□□□ -1.03
CSDE1-201ENST00000261443 KIF24Q5T7B8 1368 aa8.64□□□□□ -1.03
CSDE1-201ENST00000261443 FCHSD2O94868 740 aa8.64□□□□□ -1.03
CSDE1-201ENST00000261443 ZSCAN22P10073 491 aaPredicted RBP8.64□□□□□ -1.03
CSDE1-201ENST00000261443 PRKAR2BP31323 418 aa8.64□□□□□ -1.03
CSDE1-201ENST00000261443 TPD52L1Q16890 204 aaPredicted RBP8.64□□□□□ -1.03
CSDE1-201ENST00000261443 CEP85Q6P2H3 762 aa8.64□□□□□ -1.03
CSDE1-201ENST00000261443 RGS12O14924 1447 aa8.64□□□□□ -1.03
CSDE1-201ENST00000261443 CHGAP10645 457 aaKnown RBP8.64□□□□□ -1.03
CSDE1-201ENST00000261443 KLHL34Q8N239 644 aa8.64□□□□□ -1.03
CSDE1-201ENST00000261443 MBIPQ9NS73 344 aa8.64□□□□□ -1.03
CSDE1-201ENST00000261443 TULP2O00295 520 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 KMT5BQ4FZB7 885 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 CABP2Q9NPB3 220 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 CAPN2P17655 700 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 PDE1AP54750 535 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 CEP135Q66GS9 1140 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 C14orf93Q9H972 538 aaKnown RBP8.63□□□□□ -1.03
CSDE1-201ENST00000261443 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.63□□□□□ -1.03
CSDE1-201ENST00000261443 ATP6V1DQ9Y5K8 247 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 ATP10DQ9P241 1426 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 TMEM131LA2VDJ0 1609 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 C8orf58Q8NAV2 365 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 FAM200AQ8TCP9 573 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 TRERF1Q96PN7 1200 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 CHMP4AQ9BY43 222 aa8.63□□□□□ -1.03
CSDE1-201ENST00000261443 TRIM6-TRIM34B2RNG4 842 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 STX6O43752 255 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 FAM193AP78312 1265 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 NFE2L2Q16236 605 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 ZSCAN25Q6NSZ9 544 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 OSCARQ8IYS5 282 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 TRIM34Q9BYJ4 488 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 TSPYL1Q9H0U9 437 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 NRBP1Q9UHY1 535 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 PREX1Q8TCU6 1659 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 LUZP1Q86V48 1076 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 PUS7Q96PZ0 661 aaKnown RBP8.62□□□□□ -1.03
CSDE1-201ENST00000261443 OSBPL3Q9H4L5 887 aa8.62□□□□□ -1.03
CSDE1-201ENST00000261443 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.62□□□□□ -1.03
CSDE1-201ENST00000261443 V9GYY5 206 aaPredicted RBP8.62□□□□□ -1.03
CSDE1-201ENST00000261443 RAPGEF3O95398 923 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 F13A1P00488 732 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 SYT1P21579 422 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 RILPL2Q969X0 211 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 TRIM5Q9C035 493 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 ST7Q9NRC1 585 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 CD163L1Q9NR16 1453 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 SETD1AO15047 1707 aaKnown RBP8.61□□□□□ -1.03
CSDE1-201ENST00000261443 A0A1W2PP64 1363 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 TSHZ3Q63HK5 1081 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 CREBRFQ8IUR6 639 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 RTF1Q92541 710 aaKnown RBP8.61□□□□□ -1.03
CSDE1-201ENST00000261443 PHACTR3Q96KR7 559 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 NOL10Q9BSC4 688 aaKnown RBP8.61□□□□□ -1.03
CSDE1-201ENST00000261443 FAM53CQ9NYF3 392 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 ZNF215Q9UL58 517 aaPredicted RBP8.61□□□□□ -1.03
CSDE1-201ENST00000261443 LRRC7Q96NW7 1537 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 ARHGEF40Q8TER5 1519 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 FYB1O15117 783 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 FBXO38Q6PIJ6 1188 aa8.61□□□□□ -1.03
CSDE1-201ENST00000261443 VGFO15240 615 aaPredicted RBP8.6□□□□□ -1.03
CSDE1-201ENST00000261443 HMMRO75330 724 aa8.6□□□□□ -1.03
CSDE1-201ENST00000261443 HMOX1P09601 288 aa8.6□□□□□ -1.03
CSDE1-201ENST00000261443 RBM6P78332 1123 aaKnown RBP8.6□□□□□ -1.03
CSDE1-201ENST00000261443 DNM1Q05193 864 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms