RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 CCNL1Q9UK58 526 aaPredicted RBP14.34□□□□□ -0.11
VPS50-201ENST00000251739 WASHC2AQ641Q2 1341 aa14.34□□□□□ -0.11
VPS50-201ENST00000251739 TFCP2L1Q9NZI6 479 aa14.33□□□□□ -0.12
VPS50-201ENST00000251739 PALLDQ8WX93 1383 aa14.33□□□□□ -0.12
VPS50-201ENST00000251739 PLEKHG2Q9H7P9 1386 aa14.33□□□□□ -0.12
VPS50-201ENST00000251739 ZNF831Q5JPB2 1677 aa14.31□□□□□ -0.12
VPS50-201ENST00000251739 NKX1-1Q15270 411 aaPredicted RBP14.31□□□□□ -0.12
VPS50-201ENST00000251739 MNX1P50219 401 aaPredicted RBP14.3□□□□□ -0.12
VPS50-201ENST00000251739 COL23A1Q86Y22 540 aaPredicted RBP14.3□□□□□ -0.12
VPS50-201ENST00000251739 POLKQ9UBT6 870 aa14.3□□□□□ -0.12
VPS50-201ENST00000251739 POLD1P28340 1107 aa14.29□□□□□ -0.12
VPS50-201ENST00000251739 ZNF784Q8NCA9 323 aaPredicted RBP14.29□□□□□ -0.12
VPS50-201ENST00000251739 EYA1Q99502 592 aa14.29□□□□□ -0.12
VPS50-201ENST00000251739 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.29□□□□□ -0.123e-10■■■■■ 39.1
VPS50-201ENST00000251739 ZBTB47Q9UFB7 747 aaPredicted RBP14.28□□□□□ -0.12
VPS50-201ENST00000251739 COL5A3P25940 1745 aaPredicted RBP14.27□□□□□ -0.12
VPS50-201ENST00000251739 MPRIPQ6WCQ1 1025 aa14.27□□□□□ -0.13
VPS50-201ENST00000251739 NLGN2Q8NFZ4 835 aa14.27□□□□□ -0.13
VPS50-201ENST00000251739 PIGBQ92521 554 aa14.27□□□□□ -0.13
VPS50-201ENST00000251739 AMIGO3Q86WK7 504 aa14.26□□□□□ -0.13
VPS50-201ENST00000251739 SMARCC1Q92922 1105 aaPredicted RBP14.26□□□□□ -0.13
VPS50-201ENST00000251739 IGSF1Q8N6C5 1336 aa14.25□□□□□ -0.13
VPS50-201ENST00000251739 PPM1GO15355 546 aaPredicted RBP14.25□□□□□ -0.13
VPS50-201ENST00000251739 EIF4A2Q14240 407 aaKnown RBP14.25□□□□□ -0.13
VPS50-201ENST00000251739 SPG7Q9UQ90 795 aa14.25□□□□□ -0.13
VPS50-201ENST00000251739 KDRP35968 1356 aa14.24□□□□□ -0.13
VPS50-201ENST00000251739 CICQ96RK0 1608 aaPredicted RBP14.24□□□□□ -0.13
VPS50-201ENST00000251739 HSPA5P11021 654 aaKnown RBP14.24□□□□□ -0.13
VPS50-201ENST00000251739 PHKG2P15735 406 aa14.24□□□□□ -0.13
VPS50-201ENST00000251739 HMGB2P26583 209 aaKnown RBP14.24□□□□□ -0.13
VPS50-201ENST00000251739 FLAD1Q8NFF5 587 aa14.24□□□□□ -0.13
VPS50-201ENST00000251739 PCGF6Q9BYE7 350 aa14.24□□□□□ -0.13
VPS50-201ENST00000251739 KIF13BQ9NQT8 1826 aa14.24□□□□□ -0.13
VPS50-201ENST00000251739 EIF4G2P78344 907 aaKnown RBP eCLIP14.23□□□□□ -0.13
VPS50-201ENST00000251739 MSL1Q68DK7 614 aa14.23□□□□□ -0.13
VPS50-201ENST00000251739 KLHL34Q8N239 644 aa14.23□□□□□ -0.13
VPS50-201ENST00000251739 KIAA1551Q9HCM1 1747 aa14.23□□□□□ -0.13
VPS50-201ENST00000251739 GPR162Q16538 588 aa14.22□□□□□ -0.13
VPS50-201ENST00000251739 FARP1Q9Y4F1 1045 aaPredicted RBP14.22□□□□□ -0.13
VPS50-201ENST00000251739 MYH14Q7Z406 1995 aaKnown RBP14.22□□□□□ -0.13
VPS50-201ENST00000251739 LOC102724428A0A0B4J2F2 783 aa14.21□□□□□ -0.13
VPS50-201ENST00000251739 YBX3P16989 372 aaKnown RBP eCLIP14.21□□□□□ -0.13
VPS50-201ENST00000251739 SIK1P57059 783 aa14.21□□□□□ -0.13
VPS50-201ENST00000251739 IFNL2Q8IZJ0 200 aa14.21□□□□□ -0.13
VPS50-201ENST00000251739 LINC00116Q8NCU8 138 aa14.21□□□□□ -0.13
VPS50-201ENST00000251739 KDM6AO15550 1401 aaPredicted RBP14.21□□□□□ -0.13
VPS50-201ENST00000251739 SCN11AQ9UI33 1791 aa14.21□□□□□ -0.13
VPS50-201ENST00000251739 C4AP0C0L4 1744 aa14.21□□□□□ -0.14
VPS50-201ENST00000251739 VIRMAQ69YN4 1812 aaKnown RBP14.2□□□□□ -0.14
VPS50-201ENST00000251739 SSFA2P28290 1259 aa14.2□□□□□ -0.14
VPS50-201ENST00000251739 ITPK1Q13572 414 aa14.2□□□□□ -0.14
VPS50-201ENST00000251739 AK7Q96M32 723 aa14.2□□□□□ -0.14
VPS50-201ENST00000251739 PANK3Q9H999 370 aa14.2□□□□□ -0.14
VPS50-201ENST00000251739 TMOD3Q9NYL9 352 aa14.2□□□□□ -0.14
VPS50-201ENST00000251739 ASAP1Q9ULH1 1129 aa14.2□□□□□ -0.14
VPS50-201ENST00000251739 CD2APQ9Y5K6 639 aa14.2□□□□□ -0.14
VPS50-201ENST00000251739 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.19□□□□□ -0.14
VPS50-201ENST00000251739 TNNT2P45379 298 aaPredicted RBP14.19□□□□□ -0.14
VPS50-201ENST00000251739 TJP1Q07157 1748 aa14.18□□□□□ -0.14
VPS50-201ENST00000251739 POLR3GLQ9BT43 218 aa14.18□□□□□ -0.14
VPS50-201ENST00000251739 ATG3Q9NT62 314 aa14.18□□□□□ -0.14
VPS50-201ENST00000251739 BRCA1P38398 1863 aaKnown RBP14.17□□□□□ -0.14
VPS50-201ENST00000251739 SMIM5Q71RC9 77 aa14.17□□□□□ -0.14
VPS50-201ENST00000251739 SLC4A9Q96Q91 983 aa14.17□□□□□ -0.14
VPS50-201ENST00000251739 ADAMTS7Q9UKP4 1686 aa14.17□□□□□ -0.14
VPS50-201ENST00000251739 ERVV-2B6SEH9 535 aa14.16□□□□□ -0.14
VPS50-201ENST00000251739 GRIN3BO60391 1043 aa14.16□□□□□ -0.14
VPS50-201ENST00000251739 PELP1Q8IZL8 1130 aaKnown RBP14.16□□□□□ -0.14
VPS50-201ENST00000251739 SPOCK2Q92563 424 aa14.16□□□□□ -0.14
VPS50-201ENST00000251739 ADCY9O60503 1353 aa14.16□□□□□ -0.14
VPS50-201ENST00000251739 PHF14O94880 888 aa14.15□□□□□ -0.14
VPS50-201ENST00000251739 AEBP1Q8IUX7 1158 aa14.15□□□□□ -0.14
VPS50-201ENST00000251739 DCAF5Q96JK2 942 aa14.15□□□□□ -0.14
VPS50-201ENST00000251739 CEP350Q5VT06 3117 aa14.15□□□□□ -0.14
VPS50-201ENST00000251739 MRC1P22897 1456 aa14.14□□□□□ -0.15
VPS50-201ENST00000251739 GNPATO15228 680 aa14.14□□□□□ -0.15
VPS50-201ENST00000251739 HSP90AB1P08238 724 aaKnown RBP14.14□□□□□ -0.15
VPS50-201ENST00000251739 ATP6V1AP38606 617 aa14.14□□□□□ -0.15
VPS50-201ENST00000251739 C1QTNF8P60827 252 aa14.14□□□□□ -0.15
VPS50-201ENST00000251739 AMER1Q5JTC6 1135 aaPredicted RBP14.14□□□□□ -0.15
VPS50-201ENST00000251739 N4BP2Q86UW6 1770 aaPredicted RBP14.14□□□□□ -0.15
VPS50-201ENST00000251739 AMOTQ4VCS5 1084 aa14.13□□□□□ -0.15
VPS50-201ENST00000251739 PLEKHO1Q53GL0 409 aaPredicted RBP14.13□□□□□ -0.15
VPS50-201ENST00000251739 ZNF530Q6P9A1 599 aaPredicted RBP14.13□□□□□ -0.15
VPS50-201ENST00000251739 MORC1Q86VD1 984 aa14.13□□□□□ -0.15
VPS50-201ENST00000251739 CNTNAP4Q9C0A0 1308 aa14.13□□□□□ -0.15
VPS50-201ENST00000251739 PXDNLA1KZ92 1463 aa14.12□□□□□ -0.15
VPS50-201ENST00000251739 C10orf71Q711Q0 1435 aa14.12□□□□□ -0.15
VPS50-201ENST00000251739 ATP10DQ9P241 1426 aa14.12□□□□□ -0.15
VPS50-201ENST00000251739 KIF7Q2M1P5 1343 aa14.12□□□□□ -0.15
VPS50-201ENST00000251739 IL13P35225 146 aa14.11□□□□□ -0.15
VPS50-201ENST00000251739 NUBP1P53384 320 aa14.11□□□□□ -0.15
VPS50-201ENST00000251739 RC3H1Q5TC82 1133 aaKnown RBP14.11□□□□□ -0.15
VPS50-201ENST00000251739 CCER1Q8TC90 406 aaPredicted RBP14.11□□□□□ -0.15
VPS50-201ENST00000251739 UBR2Q8IWV8 1755 aa14.11□□□□□ -0.15
VPS50-201ENST00000251739 KNSTRNQ9Y448 316 aa14.1□□□□□ -0.15
VPS50-201ENST00000251739 ARFGEF1Q9Y6D6 1849 aa14.1□□□□□ -0.15
VPS50-201ENST00000251739 GIGYF1O75420 1035 aaPredicted RBP14.09□□□□□ -0.15
VPS50-201ENST00000251739 MMP10P09238 476 aa14.09□□□□□ -0.15
VPS50-201ENST00000251739 POTEHQ6S545 545 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms