RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 COG6Q9Y2V7 657 aa16.6■□□□□ 0.25
HIF3A-201ENST00000244302 LRRC37A3O60309 1634 aa16.59■□□□□ 0.25
HIF3A-201ENST00000244302 FAM98CQ17RN3 349 aaKnown RBP16.59■□□□□ 0.25
HIF3A-201ENST00000244302 DCAF5Q96JK2 942 aa16.59■□□□□ 0.25
HIF3A-201ENST00000244302 SPATA31A6Q5VVP1 1343 aa16.59■□□□□ 0.25
HIF3A-201ENST00000244302 MEX3CQ5U5Q3 659 aaKnown RBP16.58■□□□□ 0.25
HIF3A-201ENST00000244302 FNBP4Q8N3X1 1017 aaPredicted RBP16.58■□□□□ 0.25
HIF3A-201ENST00000244302 USP21Q9UK80 565 aa16.58■□□□□ 0.25
HIF3A-201ENST00000244302 PCDH11XQ9BZA7 1347 aa16.58■□□□□ 0.25
HIF3A-201ENST00000244302 PCDH11YQ9BZA8 1340 aa16.58■□□□□ 0.25
HIF3A-201ENST00000244302 CT47B1P0C2W7 299 aaPredicted RBP16.58■□□□□ 0.24
HIF3A-201ENST00000244302 TRIM27P14373 513 aa16.58■□□□□ 0.24
HIF3A-201ENST00000244302 G2E3Q7L622 706 aa16.58■□□□□ 0.24
HIF3A-201ENST00000244302 PPP4R2Q9NY27 417 aa16.58■□□□□ 0.24
HIF3A-201ENST00000244302 DISP2A7MBM2 1401 aa16.58■□□□□ 0.24
HIF3A-201ENST00000244302 EIF2S2P20042 333 aaKnown RBP16.57■□□□□ 0.24
HIF3A-201ENST00000244302 NRAPQ86VF7 1730 aa16.57■□□□□ 0.24
HIF3A-201ENST00000244302 EXOC5O00471 708 aa16.57■□□□□ 0.24
HIF3A-201ENST00000244302 PKD1L3Q7Z443 1732 aa16.56■□□□□ 0.24
HIF3A-201ENST00000244302 VIRMAQ69YN4 1812 aaKnown RBP16.56■□□□□ 0.24
HIF3A-201ENST00000244302 ANXA1P04083 346 aa16.56■□□□□ 0.24
HIF3A-201ENST00000244302 CABP4P57796 275 aa16.56■□□□□ 0.24
HIF3A-201ENST00000244302 EP400Q96L91 3159 aa16.56■□□□□ 0.24
HIF3A-201ENST00000244302 SLC4A2P04920 1241 aa16.55■□□□□ 0.24
HIF3A-201ENST00000244302 ALDH1L2Q3SY69 923 aa16.55■□□□□ 0.24
HIF3A-201ENST00000244302 SHANK3Q9BYB0 1731 aa16.55■□□□□ 0.24
HIF3A-201ENST00000244302 NKX1-1Q15270 411 aaPredicted RBP16.55■□□□□ 0.24
HIF3A-201ENST00000244302 FAM182BQ5T319 152 aa16.55■□□□□ 0.24
HIF3A-201ENST00000244302 ZNF790Q6PG37 636 aa16.55■□□□□ 0.24
HIF3A-201ENST00000244302 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.55■□□□□ 0.24
HIF3A-201ENST00000244302 AFF2P51816 1311 aa16.55■□□□□ 0.24
HIF3A-201ENST00000244302 KAT6BQ8WYB5 2073 aa16.55■□□□□ 0.24
HIF3A-201ENST00000244302 ZKSCAN2Q63HK3 967 aa16.54■□□□□ 0.24
HIF3A-201ENST00000244302 MARCH10Q8NA82 808 aaPredicted RBP16.54■□□□□ 0.24
HIF3A-201ENST00000244302 ZNF496Q96IT1 587 aaPredicted RBP16.54■□□□□ 0.24
HIF3A-201ENST00000244302 VPS72Q15906 364 aa16.54■□□□□ 0.24
HIF3A-201ENST00000244302 DDB1Q16531 1140 aa16.53■□□□□ 0.24
HIF3A-201ENST00000244302 ATF7IPQ6VMQ6 1270 aa16.53■□□□□ 0.24
HIF3A-201ENST00000244302 PARP4Q9UKK3 1724 aaKnown RBP16.53■□□□□ 0.24
HIF3A-201ENST00000244302 GIGYF1O75420 1035 aaPredicted RBP16.52■□□□□ 0.24
HIF3A-201ENST00000244302 PIP4K2AP48426 406 aaPredicted RBP16.52■□□□□ 0.24
HIF3A-201ENST00000244302 BABAM1Q9NWV8 329 aa16.52■□□□□ 0.24
HIF3A-201ENST00000244302 SCN11AQ9UI33 1791 aa16.52■□□□□ 0.24
HIF3A-201ENST00000244302 ADAMTS7Q9UKP4 1686 aa16.52■□□□□ 0.24
HIF3A-201ENST00000244302 HSP90AB1P08238 724 aaKnown RBP16.52■□□□□ 0.23
HIF3A-201ENST00000244302 TMEM57Q8N5G2 664 aa16.52■□□□□ 0.23
HIF3A-201ENST00000244302 PIGBQ92521 554 aa16.52■□□□□ 0.23
HIF3A-201ENST00000244302 ACSBG1Q96GR2 724 aa16.52■□□□□ 0.23
HIF3A-201ENST00000244302 A0A0G2JS52 829 aa16.51■□□□□ 0.23
HIF3A-201ENST00000244302 PROSER3Q2NL68 480 aa16.51■□□□□ 0.23
HIF3A-201ENST00000244302 DZIP1LQ8IYY4 767 aaKnown RBP16.51■□□□□ 0.23
HIF3A-201ENST00000244302 SYTL4Q96C24 671 aaPredicted RBP16.51■□□□□ 0.23
HIF3A-201ENST00000244302 PHAXQ9H814 394 aaKnown RBP16.51■□□□□ 0.23
HIF3A-201ENST00000244302 PTCD1O75127 700 aaKnown RBP16.51■□□□□ 0.23
HIF3A-201ENST00000244302 PDE3AQ14432 1141 aa16.51■□□□□ 0.23
HIF3A-201ENST00000244302 HDGFL1Q5TGJ6 251 aa16.51■□□□□ 0.23
HIF3A-201ENST00000244302 ASAP1Q9ULH1 1129 aa16.51■□□□□ 0.23
HIF3A-201ENST00000244302 THRAP3Q9Y2W1 955 aaKnown RBP16.51■□□□□ 0.23
HIF3A-201ENST00000244302 USP16Q9Y5T5 823 aa16.51■□□□□ 0.23
HIF3A-201ENST00000244302 F6X3S4 739 aa16.5■□□□□ 0.23
HIF3A-201ENST00000244302 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
HIF3A-201ENST00000244302 BARGINQ6ZT62 677 aa16.49■□□□□ 0.23
HIF3A-201ENST00000244302 PTF1AQ7RTS3 328 aa16.49■□□□□ 0.23
HIF3A-201ENST00000244302 ZNF428Q96B54 188 aa16.49■□□□□ 0.23
HIF3A-201ENST00000244302 CHPF2Q9P2E5 772 aa16.49■□□□□ 0.23
HIF3A-201ENST00000244302 SIPA1L3O60292 1781 aaPredicted RBP16.49■□□□□ 0.23
HIF3A-201ENST00000244302 KDM3BQ7LBC6 1761 aa16.49■□□□□ 0.23
HIF3A-201ENST00000244302 ERVV-2B6SEH9 535 aa16.49■□□□□ 0.23
HIF3A-201ENST00000244302 BRPF1P55201 1214 aaPredicted RBP16.49■□□□□ 0.23
HIF3A-201ENST00000244302 FTSJ3Q8IY81 847 aaKnown RBP16.49■□□□□ 0.23
HIF3A-201ENST00000244302 HEG1Q9ULI3 1381 aa16.49■□□□□ 0.23
HIF3A-201ENST00000244302 NWD2Q9ULI1 1742 aa16.48■□□□□ 0.23
HIF3A-201ENST00000244302 KCNQ2O43526 872 aa16.48■□□□□ 0.23
HIF3A-201ENST00000244302 CCDC136Q96JN2 1154 aa16.48■□□□□ 0.23
HIF3A-201ENST00000244302 GJD4Q96KN9 370 aaPredicted RBP16.48■□□□□ 0.23
HIF3A-201ENST00000244302 TOGARAM1Q9Y4F4 1720 aa16.48■□□□□ 0.23
HIF3A-201ENST00000244302 CCDC30Q5VVM6 783 aa16.47■□□□□ 0.23
HIF3A-201ENST00000244302 SKAP1Q86WV1 359 aa16.47■□□□□ 0.23
HIF3A-201ENST00000244302 ITPRIPQ8IWB1 547 aa16.47■□□□□ 0.23
HIF3A-201ENST00000244302 QTRT2Q9H974 415 aaKnown RBP16.47■□□□□ 0.23
HIF3A-201ENST00000244302 TMOD3Q9NYL9 352 aa16.47■□□□□ 0.23
HIF3A-201ENST00000244302 KIF16BQ96L93 1317 aa16.47■□□□□ 0.23
HIF3A-201ENST00000244302 TTC5Q8N0Z6 440 aa16.46■□□□□ 0.23
HIF3A-201ENST00000244302 MVPQ14764 893 aaKnown RBP16.46■□□□□ 0.23
HIF3A-201ENST00000244302 ATG3Q9NT62 314 aa16.46■□□□□ 0.23
HIF3A-201ENST00000244302 PLEKHG2Q9H7P9 1386 aa16.46■□□□□ 0.23
HIF3A-201ENST00000244302 MRC1P22897 1456 aa16.46■□□□□ 0.22
HIF3A-201ENST00000244302 TNS2Q63HR2 1409 aa16.45■□□□□ 0.22
HIF3A-201ENST00000244302 IPO8O15397 1037 aaKnown RBP16.45■□□□□ 0.22
HIF3A-201ENST00000244302 RGS12O14924 1447 aa16.45■□□□□ 0.22
HIF3A-201ENST00000244302 FLIIQ13045 1269 aa16.45■□□□□ 0.22
HIF3A-201ENST00000244302 PDIA6Q15084 440 aa16.45■□□□□ 0.22
HIF3A-201ENST00000244302 STK31Q9BXU1 1019 aa16.45■□□□□ 0.22
HIF3A-201ENST00000244302 SLC4A9Q96Q91 983 aa16.44■□□□□ 0.22
HIF3A-201ENST00000244302 CDCA7Q9BWT1 371 aaPredicted RBP16.44■□□□□ 0.22
HIF3A-201ENST00000244302 PCDHB15Q9Y5E8 787 aa16.44■□□□□ 0.22
HIF3A-201ENST00000244302 MYL6BP14649 208 aa16.43■□□□□ 0.22
HIF3A-201ENST00000244302 SLC4A10Q6U841 1118 aa16.43■□□□□ 0.22
HIF3A-201ENST00000244302 FKBP5Q13451 457 aaPredicted RBP16.43■□□□□ 0.22
HIF3A-201ENST00000244302 ARHGAP45Q92619 1136 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms