RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 MST1RQ04912 1400 aa20.05■□□□□ 0.8
UBE3D-201ENST00000237186 AMOTQ4VCS5 1084 aa20.05■□□□□ 0.8
UBE3D-201ENST00000237186 LTN1O94822 1766 aa20.05■□□□□ 0.8
UBE3D-201ENST00000237186 PLEKHO1Q53GL0 409 aaPredicted RBP20.04■□□□□ 0.8
UBE3D-201ENST00000237186 AKAP4Q5JQC9 854 aa20.04■□□□□ 0.8
UBE3D-201ENST00000237186 C19orf44Q9H6X5 657 aa20.04■□□□□ 0.8
UBE3D-201ENST00000237186 DDIT3P35638 169 aa20.03■□□□□ 0.8
UBE3D-201ENST00000237186 EIF4A1P60842 406 aaKnown RBP20.03■□□□□ 0.8
UBE3D-201ENST00000237186 ATP8B2P98198 1209 aa20.03■□□□□ 0.8
UBE3D-201ENST00000237186 OTUD7AQ8TE49 926 aaPredicted RBP20.03■□□□□ 0.8
UBE3D-201ENST00000237186 LMTK3Q96Q04 1460 aa20.03■□□□□ 0.8
UBE3D-201ENST00000237186 HDGFL1Q5TGJ6 251 aa20.03■□□□□ 0.8
UBE3D-201ENST00000237186 FAM208AQ9UK61 1670 aaKnown RBP20.02■□□□□ 0.8
UBE3D-201ENST00000237186 BCL11AQ9H165 835 aa20.02■□□□□ 0.8
UBE3D-201ENST00000237186 LGR6Q9HBX8 967 aa20.02■□□□□ 0.8
UBE3D-201ENST00000237186 TMEM94Q12767 1356 aa20.01■□□□□ 0.79
UBE3D-201ENST00000237186 SMARCA5O60264 1052 aaPredicted RBP20.01■□□□□ 0.79
UBE3D-201ENST00000237186 SDSP20132 328 aa20.01■□□□□ 0.79
UBE3D-201ENST00000237186 STRCP1A6NGW2 1772 aa20■□□□□ 0.79
UBE3D-201ENST00000237186 OVOS2A0A0G2JMS6 1433 aa20■□□□□ 0.79
UBE3D-201ENST00000237186 KRT28Q7Z3Y7 464 aa19.99■□□□□ 0.79
UBE3D-201ENST00000237186 LRRC59Q96AG4 307 aaKnown RBP19.99■□□□□ 0.79
UBE3D-201ENST00000237186 USP44Q9H0E7 712 aa19.99■□□□□ 0.79
UBE3D-201ENST00000237186 CACNA1FO60840 1977 aa19.99■□□□□ 0.79
UBE3D-201ENST00000237186 ZNF530Q6P9A1 599 aaPredicted RBP19.99■□□□□ 0.79
UBE3D-201ENST00000237186 NECTIN2Q92692 538 aa19.99■□□□□ 0.79
UBE3D-201ENST00000237186 CIZ1Q9ULV3 898 aaPredicted RBP19.99■□□□□ 0.79
UBE3D-201ENST00000237186 C1orf167Q5SNV9 1468 aa19.99■□□□□ 0.79
UBE3D-201ENST00000237186 SALL3Q9BXA9 1300 aa19.98■□□□□ 0.79
UBE3D-201ENST00000237186 PDE1AP54750 535 aa19.98■□□□□ 0.79
UBE3D-201ENST00000237186 USP26Q9BXU7 913 aa19.98■□□□□ 0.79
UBE3D-201ENST00000237186 TEFQ10587 303 aa19.97■□□□□ 0.79
UBE3D-201ENST00000237186 CASC1Q6TDU7 716 aa19.97■□□□□ 0.79
UBE3D-201ENST00000237186 SPRYD3Q8NCJ5 442 aa19.97■□□□□ 0.79
UBE3D-201ENST00000237186 ANKRD24Q8TF21 1146 aa19.97■□□□□ 0.79
UBE3D-201ENST00000237186 RNMTO43148 476 aaKnown RBP19.96■□□□□ 0.79
UBE3D-201ENST00000237186 ATF3P18847 181 aa19.96■□□□□ 0.79
UBE3D-201ENST00000237186 LRRCC1Q9C099 1032 aa19.96■□□□□ 0.79
UBE3D-201ENST00000237186 PHAXQ9H814 394 aaKnown RBP19.96■□□□□ 0.79
UBE3D-201ENST00000237186 IBTKQ9P2D0 1353 aaPredicted RBP19.96■□□□□ 0.79
UBE3D-201ENST00000237186 PNMA6EA0A0J9YXQ4 647 aa19.96■□□□□ 0.79
UBE3D-201ENST00000237186 MCM4P33991 863 aa19.96■□□□□ 0.79
UBE3D-201ENST00000237186 LMO7Q8WWI1 1683 aa19.95■□□□□ 0.78
UBE3D-201ENST00000237186 BTBD11A6QL63 1104 aa19.95■□□□□ 0.78
UBE3D-201ENST00000237186 APBB1O00213 710 aa19.95■□□□□ 0.78
UBE3D-201ENST00000237186 XPCQ01831 940 aaPredicted RBP19.95■□□□□ 0.78
UBE3D-201ENST00000237186 RABEP1Q15276 862 aa19.95■□□□□ 0.78
UBE3D-201ENST00000237186 DCCP43146 1447 aa19.95■□□□□ 0.78
UBE3D-201ENST00000237186 ZBTB7CA1YPR0 619 aa19.94■□□□□ 0.78
UBE3D-201ENST00000237186 K7ELQ4 463 aaPredicted RBP19.94■□□□□ 0.78
UBE3D-201ENST00000237186 SSH3Q8TE77 659 aa19.94■□□□□ 0.78
UBE3D-201ENST00000237186 SRCIN1Q9C0H9 1055 aa19.94■□□□□ 0.78
UBE3D-201ENST00000237186 LRRFIP2Q9Y608 721 aaKnown RBP19.94■□□□□ 0.78
UBE3D-201ENST00000237186 HEG1Q9ULI3 1381 aa19.94■□□□□ 0.78
UBE3D-201ENST00000237186 TRPM3Q9HCF6 1732 aaPredicted RBP19.94■□□□□ 0.78
UBE3D-201ENST00000237186 N4BP2Q86UW6 1770 aaPredicted RBP19.94■□□□□ 0.78
UBE3D-201ENST00000237186 HSP90AB1P08238 724 aaKnown RBP19.94■□□□□ 0.78
UBE3D-201ENST00000237186 UBTFL1P0CB47 393 aaPredicted RBP19.94■□□□□ 0.78
UBE3D-201ENST00000237186 C1orf141Q5JVX7 400 aa19.94■□□□□ 0.78
UBE3D-201ENST00000237186 STAP2Q9UGK3 403 aa19.94■□□□□ 0.78
UBE3D-201ENST00000237186 EXOC6BQ9Y2D4 811 aa19.94■□□□□ 0.78
UBE3D-201ENST00000237186 KIF1AQ12756 1690 aa19.93■□□□□ 0.78
UBE3D-201ENST00000237186 MPRIPQ6WCQ1 1025 aa19.93■□□□□ 0.78
UBE3D-201ENST00000237186 AXIN2Q9Y2T1 843 aa19.93■□□□□ 0.78
UBE3D-201ENST00000237186 KDM3BQ7LBC6 1761 aa19.93■□□□□ 0.78
UBE3D-201ENST00000237186 STRCQ7RTU9 1775 aa19.93■□□□□ 0.78
UBE3D-201ENST00000237186 CAMTA1Q9Y6Y1 1673 aa19.93■□□□□ 0.78
UBE3D-201ENST00000237186 KCNQ3O43525 872 aa19.92■□□□□ 0.78
UBE3D-201ENST00000237186 CD2BP2O95400 341 aaKnown RBP19.92■□□□□ 0.78
UBE3D-201ENST00000237186 EIF2S2P20042 333 aaKnown RBP19.92■□□□□ 0.78
UBE3D-201ENST00000237186 REC8O95072 547 aa19.92■□□□□ 0.78
UBE3D-201ENST00000237186 POLA2Q14181 598 aa19.92■□□□□ 0.78
UBE3D-201ENST00000237186 BEND3Q5T5X7 828 aa19.92■□□□□ 0.78
UBE3D-201ENST00000237186 CHPF2Q9P2E5 772 aa19.92■□□□□ 0.78
UBE3D-201ENST00000237186 DNAAF4Q8WXU2 420 aa19.91■□□□□ 0.78
UBE3D-201ENST00000237186 RBM42Q9BTD8 480 aaKnown RBP19.91■□□□□ 0.78
UBE3D-201ENST00000237186 RAB11FIP3O75154 756 aa19.9■□□□□ 0.78
UBE3D-201ENST00000237186 CADPS2Q86UW7 1296 aa19.9■□□□□ 0.78
UBE3D-201ENST00000237186 DBF4Q9UBU7 674 aaPredicted RBP19.9■□□□□ 0.78
UBE3D-201ENST00000237186 ERBB3P21860 1342 aa19.9■□□□□ 0.78
UBE3D-201ENST00000237186 AOX1Q06278 1338 aa19.9■□□□□ 0.78
UBE3D-201ENST00000237186 PXDNQ92626 1479 aa19.9■□□□□ 0.78
UBE3D-201ENST00000237186 ERC2O15083 957 aa19.9■□□□□ 0.78
UBE3D-201ENST00000237186 LMOD2Q6P5Q4 547 aa19.9■□□□□ 0.78
UBE3D-201ENST00000237186 GIGYF1O75420 1035 aaPredicted RBP19.89■□□□□ 0.77
UBE3D-201ENST00000237186 MX1P20591 662 aa19.89■□□□□ 0.77
UBE3D-201ENST00000237186 PI4KAP2A4QPH2 592 aa19.88■□□□□ 0.77
UBE3D-201ENST00000237186 PI4KAP1Q8N8J0 262 aa19.88■□□□□ 0.77
UBE3D-201ENST00000237186 RAB3GAP1Q15042 981 aa19.88■□□□□ 0.77
UBE3D-201ENST00000237186 RGPD2P0DJD1 1756 aa19.88■□□□□ 0.77
UBE3D-201ENST00000237186 PLEKHG2Q9H7P9 1386 aa19.87■□□□□ 0.77
UBE3D-201ENST00000237186 PPP1R42Q7Z4L9 355 aa19.87■□□□□ 0.77
UBE3D-201ENST00000237186 ADCY9O60503 1353 aa19.86■□□□□ 0.77
UBE3D-201ENST00000237186 DDX11L8A8MPP1 907 aa19.86■□□□□ 0.77
UBE3D-201ENST00000237186 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.86■□□□□ 0.77
UBE3D-201ENST00000237186 ALS2Q96Q42 1657 aa19.85■□□□□ 0.77
UBE3D-201ENST00000237186 ADAMTS7Q9UKP4 1686 aa19.85■□□□□ 0.77
UBE3D-201ENST00000237186 ALDH1L1O75891 902 aa19.84■□□□□ 0.77
UBE3D-201ENST00000237186 NBPF7P0C2Y1 421 aaPredicted RBP19.84■□□□□ 0.77
UBE3D-201ENST00000237186 MTX1Q13505 466 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms