RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 LOC102724428A0A0B4J2F2 783 aa16.88■□□□□ 0.29
LSM5-201ENST00000223084 GNAT3A8MTJ3 354 aa16.88■□□□□ 0.29
LSM5-201ENST00000223084 SIK1P57059 783 aa16.88■□□□□ 0.29
LSM5-201ENST00000223084 AKT1S1Q96B36 256 aa16.88■□□□□ 0.29
LSM5-201ENST00000223084 SLC52A2Q9HAB3 445 aa16.88■□□□□ 0.29
LSM5-201ENST00000223084 IL17REQ8NFR9 667 aa16.87■□□□□ 0.29
LSM5-201ENST00000223084 PLEKHF1Q96S99 279 aa16.87■□□□□ 0.29
LSM5-201ENST00000223084 RBM42Q9BTD8 480 aaKnown RBP16.86■□□□□ 0.29
LSM5-201ENST00000223084 ADAMTS7Q9UKP4 1686 aa16.85■□□□□ 0.29
LSM5-201ENST00000223084 TAF1LQ8IZX4 1826 aa16.85■□□□□ 0.29
LSM5-201ENST00000223084 SLC4A9Q96Q91 983 aa16.85■□□□□ 0.29
LSM5-201ENST00000223084 PTCD1O75127 700 aaKnown RBP16.84■□□□□ 0.29
LSM5-201ENST00000223084 ATP6V1AP38606 617 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 SLC39A6Q13433 755 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 ITPK1Q13572 414 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 CCDC184Q52MB2 194 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 LINC00116Q8NCU8 138 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 TFCP2L1Q9NZI6 479 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 MRC1P22897 1456 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 C5P01031 1676 aa16.84■□□□□ 0.29
LSM5-201ENST00000223084 ANP32CO43423 234 aa16.83■□□□□ 0.28
LSM5-201ENST00000223084 NEFMP07197 916 aa16.83■□□□□ 0.28
LSM5-201ENST00000223084 DCTN1Q14203 1278 aa16.83■□□□□ 0.28
LSM5-201ENST00000223084 MCM10Q7L590 875 aa16.83■□□□□ 0.28
LSM5-201ENST00000223084 TUBGCP6Q96RT7 1819 aa16.83■□□□□ 0.28
LSM5-201ENST00000223084 CASZ1Q86V15 1759 aa16.82■□□□□ 0.28
LSM5-201ENST00000223084 ZBTB7AO95365 584 aa16.82■□□□□ 0.28
LSM5-201ENST00000223084 TEFQ10587 303 aa16.82■□□□□ 0.28
LSM5-201ENST00000223084 WDR43Q15061 677 aaKnown RBP eCLIP16.82■□□□□ 0.28
LSM5-201ENST00000223084 CCDC146Q8IYE0 955 aa16.82■□□□□ 0.28
LSM5-201ENST00000223084 PNPLA7Q6ZV29 1317 aa16.81■□□□□ 0.28
LSM5-201ENST00000223084 MAPK8IP3Q9UPT6 1336 aa16.81■□□□□ 0.28
LSM5-201ENST00000223084 DLG5Q8TDM6 1919 aa16.81■□□□□ 0.28
LSM5-201ENST00000223084 SMIM5Q71RC9 77 aa16.81■□□□□ 0.28
LSM5-201ENST00000223084 RTF1Q92541 710 aaKnown RBP16.81■□□□□ 0.28
LSM5-201ENST00000223084 PNNQ9H307 717 aaKnown RBP16.81■□□□□ 0.28
LSM5-201ENST00000223084 ADAMTS8Q9UP79 889 aa16.81■□□□□ 0.28
LSM5-201ENST00000223084 CEMIPQ8WUJ3 1361 aa16.8■□□□□ 0.28
LSM5-201ENST00000223084 C4BP0C0L5 1744 aa16.8■□□□□ 0.28
LSM5-201ENST00000223084 NFE2L2Q16236 605 aa16.8■□□□□ 0.28
LSM5-201ENST00000223084 ATF5Q9Y2D1 282 aaPredicted RBP16.8■□□□□ 0.28
LSM5-201ENST00000223084 AMIGO3Q86WK7 504 aa16.79■□□□□ 0.28
LSM5-201ENST00000223084 AK7Q96M32 723 aa16.79■□□□□ 0.28
LSM5-201ENST00000223084 LRP5O75197 1615 aa16.78■□□□□ 0.28
LSM5-201ENST00000223084 COL23A1Q86Y22 540 aaPredicted RBP16.78■□□□□ 0.28
LSM5-201ENST00000223084 SPON1Q9HCB6 807 aa16.78■□□□□ 0.28
LSM5-201ENST00000223084 SIPA1L3O60292 1781 aaPredicted RBP16.78■□□□□ 0.28
LSM5-201ENST00000223084 QSER1Q2KHR3 1735 aa16.77■□□□□ 0.28
LSM5-201ENST00000223084 KCNQ3O43525 872 aa16.77■□□□□ 0.28
LSM5-201ENST00000223084 HTATSF1O43719 755 aaKnown RBP16.77■□□□□ 0.28
LSM5-201ENST00000223084 THUMPD2Q9BTF0 503 aaKnown RBP16.77■□□□□ 0.28
LSM5-201ENST00000223084 RRP7AQ9Y3A4 280 aaKnown RBP16.77■□□□□ 0.28
LSM5-201ENST00000223084 KCPQ6ZWJ8 1503 aa16.76■□□□□ 0.27
LSM5-201ENST00000223084 PHF14O94880 888 aa16.76■□□□□ 0.27
LSM5-201ENST00000223084 HMGB2P26583 209 aaKnown RBP16.76■□□□□ 0.27
LSM5-201ENST00000223084 UBR3Q6ZT12 1888 aa16.76■□□□□ 0.27
LSM5-201ENST00000223084 ZNF831Q5JPB2 1677 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 MYH14Q7Z406 1995 aaKnown RBP16.75■□□□□ 0.27
LSM5-201ENST00000223084 BTBD11A6QL63 1104 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 GNPATO15228 680 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 TMPOP42166 694 aaKnown RBP16.75■□□□□ 0.27
LSM5-201ENST00000223084 RIPK4P57078 832 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 ZNF790Q6PG37 636 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 DNAJC10Q8IXB1 793 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 TTC5Q8N0Z6 440 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 RUNDC1Q96C34 613 aa16.75■□□□□ 0.27
LSM5-201ENST00000223084 COL5A3P25940 1745 aaPredicted RBP16.74■□□□□ 0.27
LSM5-201ENST00000223084 TJP1Q07157 1748 aa16.74■□□□□ 0.27
LSM5-201ENST00000223084 NEUROD2Q15784 382 aa16.74■□□□□ 0.27
LSM5-201ENST00000223084 ZNF496Q96IT1 587 aaPredicted RBP16.74■□□□□ 0.27
LSM5-201ENST00000223084 MTFR1LQ9H019 292 aa16.74■□□□□ 0.27
LSM5-201ENST00000223084 MRS2Q9HD23 443 aa16.74■□□□□ 0.27
LSM5-201ENST00000223084 MIS18AQ9NYP9 233 aa16.74■□□□□ 0.27
LSM5-201ENST00000223084 UBR2Q8IWV8 1755 aa16.74■□□□□ 0.27
LSM5-201ENST00000223084 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.73■□□□□ 0.27
LSM5-201ENST00000223084 PTGER2P43116 358 aa16.73■□□□□ 0.27
LSM5-201ENST00000223084 CRKLP46109 303 aaKnown RBP16.73■□□□□ 0.27
LSM5-201ENST00000223084 CNTNAP4Q9C0A0 1308 aa16.72■□□□□ 0.27
LSM5-201ENST00000223084 TAF7Q15545 349 aaPredicted RBP16.72■□□□□ 0.27
LSM5-201ENST00000223084 RC3H1Q5TC82 1133 aaKnown RBP16.72■□□□□ 0.27
LSM5-201ENST00000223084 SSFA2P28290 1259 aa16.71■□□□□ 0.27
LSM5-201ENST00000223084 MSL1Q68DK7 614 aa16.71■□□□□ 0.27
LSM5-201ENST00000223084 INTS5Q6P9B9 1019 aaKnown RBP16.71■□□□□ 0.27
LSM5-201ENST00000223084 FLAD1Q8NFF5 587 aa16.71■□□□□ 0.27
LSM5-201ENST00000223084 SLC16A10Q8TF71 515 aa16.71■□□□□ 0.27
LSM5-201ENST00000223084 RTCBQ9Y3I0 505 aaKnown RBP16.71■□□□□ 0.27
LSM5-201ENST00000223084 HEG1Q9ULI3 1381 aa16.7■□□□□ 0.26
LSM5-201ENST00000223084 RPS6KA4O75676 772 aa16.7■□□□□ 0.26
LSM5-201ENST00000223084 CYP19A1P11511 503 aaPredicted RBP16.7■□□□□ 0.26
LSM5-201ENST00000223084 VSIG10Q8N0Z9 540 aa16.7■□□□□ 0.26
LSM5-201ENST00000223084 PNISRQ8TF01 805 aaKnown RBP16.7■□□□□ 0.26
LSM5-201ENST00000223084 FMNL2Q96PY5 1086 aa16.7■□□□□ 0.26
LSM5-201ENST00000223084 SGIP1Q9BQI5 828 aa16.7■□□□□ 0.26
LSM5-201ENST00000223084 PPP1R1BQ9UD71 204 aaPredicted RBP16.7■□□□□ 0.26
LSM5-201ENST00000223084 SENP3-EIF4A1A0A087X0R7 540 aa16.69■□□□□ 0.26
LSM5-201ENST00000223084 APAF1O14727 1248 aa16.69■□□□□ 0.26
LSM5-201ENST00000223084 CICQ96RK0 1608 aaPredicted RBP16.69■□□□□ 0.26
LSM5-201ENST00000223084 PRAMEF22A3QJZ6 481 aa16.68■□□□□ 0.26
LSM5-201ENST00000223084 TRAPPC3LQ5T215 181 aa16.68■□□□□ 0.26
LSM5-201ENST00000223084 ARHGEF1Q92888 912 aaKnown RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms