RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 LRRC59Q96AG4 307 aaKnown RBP10.28□□□□□ -0.76
VAMP3-201ENST00000054666 OVOS2A0A0G2JMS6 1433 aa10.27□□□□□ -0.76
VAMP3-201ENST00000054666 DEKP35659 375 aaKnown RBP10.27□□□□□ -0.76
VAMP3-201ENST00000054666 KDM3BQ7LBC6 1761 aa10.27□□□□□ -0.76
VAMP3-201ENST00000054666 ALS2Q96Q42 1657 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 MST1RQ04912 1400 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 NCOA3Q9Y6Q9 1424 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 CDC45O75419 566 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 GNAI2P04899 355 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 GNAI3P08754 354 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 HOXB7P09629 217 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 NFKBIBQ15653 356 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 NECTIN2Q92692 538 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 TMEM94Q12767 1356 aa10.27□□□□□ -0.77
VAMP3-201ENST00000054666 HSCBQ8IWL3 235 aa10.26□□□□□ -0.77
VAMP3-201ENST00000054666 TBC1D2Q9BYX2 928 aa10.26□□□□□ -0.77
VAMP3-201ENST00000054666 BTBD11A6QL63 1104 aa10.25□□□□□ -0.77
VAMP3-201ENST00000054666 RBM25P49756 843 aaKnown RBP10.25□□□□□ -0.77
VAMP3-201ENST00000054666 TBC1D9Q6ZT07 1266 aa10.25□□□□□ -0.77
VAMP3-201ENST00000054666 CADPS2Q86UW7 1296 aa10.25□□□□□ -0.77
VAMP3-201ENST00000054666 PLEKHM2Q8IWE5 1019 aa10.25□□□□□ -0.77
VAMP3-201ENST00000054666 BCL11AQ9H165 835 aa10.25□□□□□ -0.77
VAMP3-201ENST00000054666 SLKQ9H2G2 1235 aaPredicted RBP10.25□□□□□ -0.77
VAMP3-201ENST00000054666 NPHP3Q7Z494 1330 aa10.25□□□□□ -0.77
VAMP3-201ENST00000054666 PXDNQ92626 1479 aa10.24□□□□□ -0.77
VAMP3-201ENST00000054666 LMTK3Q96Q04 1460 aa10.24□□□□□ -0.77
VAMP3-201ENST00000054666 APBB1O00213 710 aa10.24□□□□□ -0.77
VAMP3-201ENST00000054666 EIF4A1P60842 406 aaKnown RBP10.24□□□□□ -0.77
VAMP3-201ENST00000054666 TTC22Q5TAA0 569 aa10.24□□□□□ -0.77
VAMP3-201ENST00000054666 CASC1Q6TDU7 716 aa10.24□□□□□ -0.77
VAMP3-201ENST00000054666 DNAJC5Q9H3Z4 198 aa10.24□□□□□ -0.77
VAMP3-201ENST00000054666 ERBB3P21860 1342 aa10.24□□□□□ -0.77
VAMP3-201ENST00000054666 EIF2S2P20042 333 aaKnown RBP10.23□□□□□ -0.77
VAMP3-201ENST00000054666 MPRIPQ6WCQ1 1025 aa10.23□□□□□ -0.77
VAMP3-201ENST00000054666 LGR6Q9HBX8 967 aa10.23□□□□□ -0.77
VAMP3-201ENST00000054666 STRCP1A6NGW2 1772 aa10.23□□□□□ -0.77
VAMP3-201ENST00000054666 RNMTO43148 476 aaKnown RBP10.23□□□□□ -0.77
VAMP3-201ENST00000054666 UBTFL1P0CB47 393 aaPredicted RBP10.23□□□□□ -0.77
VAMP3-201ENST00000054666 GSPT1P15170 499 aaKnown RBP10.23□□□□□ -0.77
VAMP3-201ENST00000054666 TNS3Q68CZ2 1445 aa10.23□□□□□ -0.77
VAMP3-201ENST00000054666 ABCC6O95255 1503 aa10.22□□□□□ -0.77
VAMP3-201ENST00000054666 ZC3H6P61129 1189 aaKnown RBP10.22□□□□□ -0.77
VAMP3-201ENST00000054666 RAPGEF4Q8WZA2 1011 aa10.22□□□□□ -0.77
VAMP3-201ENST00000054666 RGPD5Q99666 1765 aa10.22□□□□□ -0.77
VAMP3-201ENST00000054666 SRCIN1Q9C0H9 1055 aa10.22□□□□□ -0.77
VAMP3-201ENST00000054666 SMARCA5O60264 1052 aaPredicted RBP10.21□□□□□ -0.77
VAMP3-201ENST00000054666 CHPF2Q9P2E5 772 aa10.21□□□□□ -0.77
VAMP3-201ENST00000054666 AXIN2Q9Y2T1 843 aa10.21□□□□□ -0.77
VAMP3-201ENST00000054666 LRRCC1Q9C099 1032 aa10.21□□□□□ -0.78
VAMP3-201ENST00000054666 PHAXQ9H814 394 aaKnown RBP10.21□□□□□ -0.78
VAMP3-201ENST00000054666 LRRFIP2Q9Y608 721 aaKnown RBP10.21□□□□□ -0.78
VAMP3-201ENST00000054666 CSB-PGBD3P0DP91 1061 aa10.2□□□□□ -0.78
VAMP3-201ENST00000054666 TATP17735 454 aaPredicted RBP10.2□□□□□ -0.78
VAMP3-201ENST00000054666 ATP8B2P98198 1209 aa10.2□□□□□ -0.78
VAMP3-201ENST00000054666 C16orf71Q8IYS4 520 aaPredicted RBP10.2□□□□□ -0.78
VAMP3-201ENST00000054666 NLRP2Q9NX02 1062 aa10.2□□□□□ -0.78
VAMP3-201ENST00000054666 DBF4Q9UBU7 674 aaPredicted RBP10.2□□□□□ -0.78
VAMP3-201ENST00000054666 EXOC6BQ9Y2D4 811 aa10.2□□□□□ -0.78
VAMP3-201ENST00000054666 PLEKHG2Q9H7P9 1386 aa10.2□□□□□ -0.78
VAMP3-201ENST00000054666 SIPA1L3O60292 1781 aaPredicted RBP10.2□□□□□ -0.78
VAMP3-201ENST00000054666 OTUD7AQ8TE49 926 aaPredicted RBP10.19□□□□□ -0.78
VAMP3-201ENST00000054666 DNAAF4Q8WXU2 420 aa10.19□□□□□ -0.78
VAMP3-201ENST00000054666 SNX21Q969T3 373 aa10.19□□□□□ -0.78
VAMP3-201ENST00000054666 ADAMTS7Q9UKP4 1686 aa10.19□□□□□ -0.78
VAMP3-201ENST00000054666 IBTKQ9P2D0 1353 aaPredicted RBP10.19□□□□□ -0.78
VAMP3-201ENST00000054666 KCNQ3O43525 872 aa10.19□□□□□ -0.78
VAMP3-201ENST00000054666 FRAT2O75474 233 aaPredicted RBP10.19□□□□□ -0.78
VAMP3-201ENST00000054666 HSP90AB1P08238 724 aaKnown RBP10.19□□□□□ -0.78
VAMP3-201ENST00000054666 ANTXR1Q9H6X2 564 aa10.19□□□□□ -0.78
VAMP3-201ENST00000054666 SPG7Q9UQ90 795 aa10.19□□□□□ -0.78
VAMP3-201ENST00000054666 SDSP20132 328 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 USP44Q9H0E7 712 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 OSBPL3Q9H4L5 887 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 PNMA6EA0A0J9YXQ4 647 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 PI4KAP2A4QPH2 592 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 HSPA2P54652 639 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 PDE1AP54750 535 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 PI4KAP1Q8N8J0 262 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 SPRYD3Q8NCJ5 442 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 DDX17Q92841 729 aaKnown RBP10.18□□□□□ -0.78
VAMP3-201ENST00000054666 CHMP5Q9NZZ3 219 aa10.18□□□□□ -0.78
VAMP3-201ENST00000054666 REC8O95072 547 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 HDAC5Q9UQL6 1122 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 COL18A1P39060 1754 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 SCN11AQ9UI33 1791 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 CRYBG1Q9Y4K1 1723 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 SPATA31A3Q5VYP0 1347 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 MEGF6O75095 1541 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 GIGYF1O75420 1035 aaPredicted RBP10.17□□□□□ -0.78
VAMP3-201ENST00000054666 HSP90AA1P07900 732 aaKnown RBP10.17□□□□□ -0.78
VAMP3-201ENST00000054666 MX1P20591 662 aa10.17□□□□□ -0.78
VAMP3-201ENST00000054666 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.17□□□□□ -0.78
VAMP3-201ENST00000054666 RAB11FIP3O75154 756 aa10.16□□□□□ -0.78
VAMP3-201ENST00000054666 DDX58O95786 925 aaKnown RBP10.16□□□□□ -0.78
VAMP3-201ENST00000054666 BEND3Q5T5X7 828 aa10.16□□□□□ -0.78
VAMP3-201ENST00000054666 IFNL2Q8IZJ0 200 aa10.16□□□□□ -0.78
VAMP3-201ENST00000054666 SSH3Q8TE77 659 aa10.16□□□□□ -0.78
VAMP3-201ENST00000054666 HYPKQ9NX55 129 aa10.16□□□□□ -0.78
VAMP3-201ENST00000054666 ADCY9O60503 1353 aa10.16□□□□□ -0.78
VAMP3-201ENST00000054666 CPDO75976 1380 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms