Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Gm25239-201ENSMUST00000174915 86 ntBASIC41.91■■■■■ 4.3
Nkx2-4Q9EQM3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
Nkx2-4Q9EQM3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.4■■■■□ 3.74
Nkx2-4Q9EQM3 Gm24109-201ENSMUST00000175489 103 ntBASIC36.62■■■■□ 3.45
Nkx2-4Q9EQM3 Gm15042-201ENSMUST00000120212 883 ntBASIC36.08■■■■□ 3.37
Nkx2-4Q9EQM3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
Nkx2-4Q9EQM3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.4■■■■□ 3.26
Nkx2-4Q9EQM3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
Nkx2-4Q9EQM3 Gm15045-201ENSMUST00000117359 883 ntBASIC35.17■■■■□ 3.22
Nkx2-4Q9EQM3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
Nkx2-4Q9EQM3 Gm23366-201ENSMUST00000175022 89 ntBASIC34.92■■■■□ 3.18
Nkx2-4Q9EQM3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.35■■■■□ 3.09
Nkx2-4Q9EQM3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.04■■■■□ 3.04
Nkx2-4Q9EQM3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.97■■■■□ 3.03
Nkx2-4Q9EQM3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
Nkx2-4Q9EQM3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
Nkx2-4Q9EQM3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Nkx2-4Q9EQM3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.42■■■□□ 2.94
Nkx2-4Q9EQM3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
Nkx2-4Q9EQM3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.3■■■□□ 2.92
Nkx2-4Q9EQM3 Gm25238-201ENSMUST00000174914 89 ntBASIC33.25■■■□□ 2.91
Nkx2-4Q9EQM3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Nkx2-4Q9EQM3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
Nkx2-4Q9EQM3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Nkx2-4Q9EQM3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
Nkx2-4Q9EQM3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.53■■■□□ 2.8
Nkx2-4Q9EQM3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
Nkx2-4Q9EQM3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Nkx2-4Q9EQM3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
Nkx2-4Q9EQM3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Nkx2-4Q9EQM3 Gm25262-201ENSMUST00000174934 133 ntBASIC32.14■■■□□ 2.74
Nkx2-4Q9EQM3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.12■■■□□ 2.73
Nkx2-4Q9EQM3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.07■■■□□ 2.72
Nkx2-4Q9EQM3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.06■■■□□ 2.72
Nkx2-4Q9EQM3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32■■■□□ 2.71
Nkx2-4Q9EQM3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.99■■■□□ 2.71
Nkx2-4Q9EQM3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.69
Nkx2-4Q9EQM3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Nkx2-4Q9EQM3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
Nkx2-4Q9EQM3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.75■■■□□ 2.67
Nkx2-4Q9EQM3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.64■■■□□ 2.66
Nkx2-4Q9EQM3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.63■■■□□ 2.65
Nkx2-4Q9EQM3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.6■■■□□ 2.65
Nkx2-4Q9EQM3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.59■■■□□ 2.65
Nkx2-4Q9EQM3 Gm26115-201ENSMUST00000175605 87 ntBASIC31.56■■■□□ 2.64
Nkx2-4Q9EQM3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Nkx2-4Q9EQM3 Gm27325-201ENSMUST00000175467 74 ntBASIC31.5■■■□□ 2.63
Nkx2-4Q9EQM3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.49■■■□□ 2.63
Nkx2-4Q9EQM3 Gm8109-201ENSMUST00000194076 746 ntBASIC31.34■■■□□ 2.61
Nkx2-4Q9EQM3 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Nkx2-4Q9EQM3 Rab21-202ENSMUST00000218831 843 ntBASIC31.3■■■□□ 2.6
Nkx2-4Q9EQM3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.29■■■□□ 2.6
Nkx2-4Q9EQM3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Nkx2-4Q9EQM3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Nkx2-4Q9EQM3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Nkx2-4Q9EQM3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Nkx2-4Q9EQM3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Nkx2-4Q9EQM3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Nkx2-4Q9EQM3 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Nkx2-4Q9EQM3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.9■■■□□ 2.54
Nkx2-4Q9EQM3 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
Nkx2-4Q9EQM3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
Nkx2-4Q9EQM3 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.8■■■□□ 2.52
Nkx2-4Q9EQM3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.74■■■□□ 2.51
Nkx2-4Q9EQM3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.71■■■□□ 2.51
Nkx2-4Q9EQM3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Nkx2-4Q9EQM3 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.56■■■□□ 2.48
Nkx2-4Q9EQM3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
Nkx2-4Q9EQM3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Nkx2-4Q9EQM3 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Nkx2-4Q9EQM3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
Nkx2-4Q9EQM3 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Nkx2-4Q9EQM3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.37■■■□□ 2.45
Nkx2-4Q9EQM3 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
Nkx2-4Q9EQM3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
Nkx2-4Q9EQM3 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Nkx2-4Q9EQM3 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.31■■■□□ 2.44
Nkx2-4Q9EQM3 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Nkx2-4Q9EQM3 Gm24804-201ENSMUST00000174982 85 ntBASIC30.23■■■□□ 2.43
Nkx2-4Q9EQM3 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.19■■■□□ 2.42
Nkx2-4Q9EQM3 Psd-208ENSMUST00000224556 2034 ntBASIC30.15■■■□□ 2.42
Nkx2-4Q9EQM3 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.11■■■□□ 2.41
Nkx2-4Q9EQM3 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
Nkx2-4Q9EQM3 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.05■■■□□ 2.4
Nkx2-4Q9EQM3 Gm27322-201ENSMUST00000184007 104 ntBASIC30.02■■■□□ 2.4
Nkx2-4Q9EQM3 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30■■■□□ 2.39
Nkx2-4Q9EQM3 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.96■■■□□ 2.39
Nkx2-4Q9EQM3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Nkx2-4Q9EQM3 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.93■■■□□ 2.38
Nkx2-4Q9EQM3 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC29.93■■■□□ 2.38
Nkx2-4Q9EQM3 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.89■■■□□ 2.38
Nkx2-4Q9EQM3 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.88■■■□□ 2.37
Nkx2-4Q9EQM3 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29.87■■■□□ 2.37
Nkx2-4Q9EQM3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC29.83■■■□□ 2.37
Nkx2-4Q9EQM3 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Nkx2-4Q9EQM3 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
Nkx2-4Q9EQM3 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Nkx2-4Q9EQM3 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
Nkx2-4Q9EQM3 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
Nkx2-4Q9EQM3 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Retrieved 100 of 76,532 protein–RNA pairs in 7.2 ms