Protein–RNA interactions for Protein: Q9D0E3

Lysmd1, LysM and putative peptidoglycan-binding domain-containing protein 1, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lysmd1Q9D0E3 Gm25239-201ENSMUST00000174915 86 ntBASIC45.56■■■■■ 4.88
Lysmd1Q9D0E3 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC42.69■■■■■ 4.42
Lysmd1Q9D0E3 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC41.96■■■■■ 4.31
Lysmd1Q9D0E3 Gm24109-201ENSMUST00000175489 103 ntBASIC40.16■■■■■ 4.02
Lysmd1Q9D0E3 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38.75■■■■□ 3.79
Lysmd1Q9D0E3 Gm15042-201ENSMUST00000120212 883 ntBASIC38.67■■■■□ 3.78
Lysmd1Q9D0E3 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC38.53■■■■□ 3.76
Lysmd1Q9D0E3 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC38.37■■■■□ 3.73
Lysmd1Q9D0E3 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38.02■■■■□ 3.68
Lysmd1Q9D0E3 Gm23366-201ENSMUST00000175022 89 ntBASIC37.9■■■■□ 3.66
Lysmd1Q9D0E3 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37.82■■■■□ 3.64
Lysmd1Q9D0E3 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
Lysmd1Q9D0E3 Gm15045-201ENSMUST00000117359 883 ntBASIC37.57■■■■□ 3.6
Lysmd1Q9D0E3 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
Lysmd1Q9D0E3 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC37.55■■■■□ 3.6
Lysmd1Q9D0E3 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC37.23■■■■□ 3.55
Lysmd1Q9D0E3 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
Lysmd1Q9D0E3 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36.48■■■■□ 3.43
Lysmd1Q9D0E3 Gm25238-201ENSMUST00000174914 89 ntBASIC36.32■■■■□ 3.4
Lysmd1Q9D0E3 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
Lysmd1Q9D0E3 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Lysmd1Q9D0E3 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC35.96■■■■□ 3.35
Lysmd1Q9D0E3 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
Lysmd1Q9D0E3 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC35.54■■■■□ 3.28
Lysmd1Q9D0E3 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35.47■■■■□ 3.27
Lysmd1Q9D0E3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC35.46■■■■□ 3.27
Lysmd1Q9D0E3 Gm25262-201ENSMUST00000174934 133 ntBASIC35.42■■■■□ 3.26
Lysmd1Q9D0E3 Gm26115-201ENSMUST00000175605 87 ntBASIC35.04■■■■□ 3.2
Lysmd1Q9D0E3 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34.98■■■■□ 3.19
Lysmd1Q9D0E3 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34.97■■■■□ 3.19
Lysmd1Q9D0E3 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34.96■■■■□ 3.19
Lysmd1Q9D0E3 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34.68■■■■□ 3.14
Lysmd1Q9D0E3 Gm8109-201ENSMUST00000194076 746 ntBASIC34.68■■■■□ 3.14
Lysmd1Q9D0E3 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
Lysmd1Q9D0E3 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC34.65■■■■□ 3.14
Lysmd1Q9D0E3 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.39■■■■□ 3.1
Lysmd1Q9D0E3 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
Lysmd1Q9D0E3 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
Lysmd1Q9D0E3 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.17■■■■□ 3.06
Lysmd1Q9D0E3 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
Lysmd1Q9D0E3 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC34.06■■■■□ 3.04
Lysmd1Q9D0E3 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC33.91■■■■□ 3.02
Lysmd1Q9D0E3 Rab21-202ENSMUST00000218831 843 ntBASIC33.83■■■■□ 3.01
Lysmd1Q9D0E3 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
Lysmd1Q9D0E3 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
Lysmd1Q9D0E3 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Lysmd1Q9D0E3 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
Lysmd1Q9D0E3 Gm27325-201ENSMUST00000175467 74 ntBASIC33.65■■■□□ 2.98
Lysmd1Q9D0E3 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC33.52■■■□□ 2.96
Lysmd1Q9D0E3 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Lysmd1Q9D0E3 Gm24804-201ENSMUST00000174982 85 ntBASIC33.38■■■□□ 2.93
Lysmd1Q9D0E3 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.37■■■□□ 2.93
Lysmd1Q9D0E3 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.26■■■□□ 2.91
Lysmd1Q9D0E3 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC33.23■■■□□ 2.91
Lysmd1Q9D0E3 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Lysmd1Q9D0E3 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
Lysmd1Q9D0E3 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
Lysmd1Q9D0E3 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
Lysmd1Q9D0E3 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Lysmd1Q9D0E3 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC33.07■■■□□ 2.88
Lysmd1Q9D0E3 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
Lysmd1Q9D0E3 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
Lysmd1Q9D0E3 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.02■■■□□ 2.88
Lysmd1Q9D0E3 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
Lysmd1Q9D0E3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC33.02■■■□□ 2.88
Lysmd1Q9D0E3 Gm17082-201ENSMUST00000166043 1091 ntBASIC32.94■■■□□ 2.86
Lysmd1Q9D0E3 Zfp131-205ENSMUST00000223812 663 ntBASIC32.94■■■□□ 2.86
Lysmd1Q9D0E3 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
Lysmd1Q9D0E3 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Lysmd1Q9D0E3 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC32.83■■■□□ 2.85
Lysmd1Q9D0E3 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Lysmd1Q9D0E3 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC32.77■■■□□ 2.84
Lysmd1Q9D0E3 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Lysmd1Q9D0E3 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC32.74■■■□□ 2.83
Lysmd1Q9D0E3 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC32.72■■■□□ 2.83
Lysmd1Q9D0E3 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.71■■■□□ 2.83
Lysmd1Q9D0E3 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Lysmd1Q9D0E3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Lysmd1Q9D0E3 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
Lysmd1Q9D0E3 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
Lysmd1Q9D0E3 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC32.58■■■□□ 2.81
Lysmd1Q9D0E3 Gm27322-201ENSMUST00000184007 104 ntBASIC32.52■■■□□ 2.8
Lysmd1Q9D0E3 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Lysmd1Q9D0E3 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
Lysmd1Q9D0E3 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.38■■■□□ 2.77
Lysmd1Q9D0E3 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
Lysmd1Q9D0E3 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC32.34■■■□□ 2.77
Lysmd1Q9D0E3 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
Lysmd1Q9D0E3 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
Lysmd1Q9D0E3 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
Lysmd1Q9D0E3 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Lysmd1Q9D0E3 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
Lysmd1Q9D0E3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC32.21■■■□□ 2.75
Lysmd1Q9D0E3 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Lysmd1Q9D0E3 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC32.2■■■□□ 2.75
Lysmd1Q9D0E3 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC32.2■■■□□ 2.75
Lysmd1Q9D0E3 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC32.05■■■□□ 2.72
Lysmd1Q9D0E3 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC32.03■■■□□ 2.72
Lysmd1Q9D0E3 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC32■■■□□ 2.71
Lysmd1Q9D0E3 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms