Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Syne4Q8CII8 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.99■□□□□ 0.47
Syne4Q8CII8 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gm5177-201ENSMUST00000183092 997 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gm20949-201ENSMUST00000206478 952 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gm45612-201ENSMUST00000211320 160 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Gm13332-201ENSMUST00000120451 1398 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.98■□□□□ 0.47
Syne4Q8CII8 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.98■□□□□ 0.47
Syne4Q8CII8 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.97■□□□□ 0.47
Syne4Q8CII8 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.97■□□□□ 0.47
Syne4Q8CII8 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
Syne4Q8CII8 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC17.96■□□□□ 0.47
Syne4Q8CII8 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Syne4Q8CII8 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Syne4Q8CII8 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.95■□□□□ 0.46
Syne4Q8CII8 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.95■□□□□ 0.46
Syne4Q8CII8 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.95■□□□□ 0.46
Syne4Q8CII8 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Syne4Q8CII8 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Syne4Q8CII8 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Syne4Q8CII8 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Syne4Q8CII8 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Syne4Q8CII8 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Syne4Q8CII8 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms