Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ABCD3P28288 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ABCD3P28288 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 KRT8P45-201ENST00000414328 1447 ntBASIC17.3■□□□□ 0.36
ABCD3P28288 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.3■□□□□ 0.36
ABCD3P28288 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
ABCD3P28288 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 AC008556.1-201ENST00000610908 2040 ntBASIC17.3■□□□□ 0.36
ABCD3P28288 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCD3P28288 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCD3P28288 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCD3P28288 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 AC018445.3-201ENST00000624177 1945 ntBASIC17.3■□□□□ 0.36
ABCD3P28288 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 TERF1P1-201ENST00000311003 1181 ntBASIC17.3■□□□□ 0.36
ABCD3P28288 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
ABCD3P28288 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
ABCD3P28288 LIN28AP1-201ENST00000429574 405 ntBASIC17.3■□□□□ 0.36
ABCD3P28288 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.3■□□□□ 0.36
ABCD3P28288 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
ABCD3P28288 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCD3P28288 AC010203.1-204ENST00000548782 407 ntBASIC17.3■□□□□ 0.36
ABCD3P28288 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.3■□□□□ 0.36
ABCD3P28288 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ABCD3P28288 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.3■□□□□ 0.36
ABCD3P28288 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCD3P28288 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
ABCD3P28288 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.3■□□□□ 0.36
ABCD3P28288 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCD3P28288 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.3■□□□□ 0.36
ABCD3P28288 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.3■□□□□ 0.36
ABCD3P28288 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ABCD3P28288 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
ABCD3P28288 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ABCD3P28288 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
ABCD3P28288 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.29■□□□□ 0.36
ABCD3P28288 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCD3P28288 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.29■□□□□ 0.36
ABCD3P28288 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 AC087289.5-201ENST00000586076 3175 ntBASIC17.29■□□□□ 0.36
ABCD3P28288 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
ABCD3P28288 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCD3P28288 AC005521.1-201ENST00000393351 872 ntBASIC17.29■□□□□ 0.36
ABCD3P28288 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCD3P28288 AL137013.1-201ENST00000432946 1228 ntBASIC17.29■□□□□ 0.36
ABCD3P28288 ATP5G1P1-201ENST00000448724 379 ntBASIC17.29■□□□□ 0.36
ABCD3P28288 MIR3180-5-201ENST00000583743 153 ntBASIC17.29■□□□□ 0.36
ABCD3P28288 CR769767.2-201ENST00000622735 460 ntBASIC17.29■□□□□ 0.36
ABCD3P28288 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.29■□□□□ 0.36
ABCD3P28288 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ABCD3P28288 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ABCD3P28288 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCD3P28288 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ABCD3P28288 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCD3P28288 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCD3P28288 AC036111.1-201ENST00000533973 1582 ntBASIC17.28■□□□□ 0.36
ABCD3P28288 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
ABCD3P28288 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.28■□□□□ 0.36
ABCD3P28288 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 WWOX-216ENST00000569818 525 ntBASIC17.28■□□□□ 0.36
ABCD3P28288 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCD3P28288 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCD3P28288 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.28■□□□□ 0.36
ABCD3P28288 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.28■□□□□ 0.36
ABCD3P28288 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ABCD3P28288 BX323043.1-201ENST00000641006 1765 ntBASIC17.28■□□□□ 0.36
ABCD3P28288 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCD3P28288 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
ABCD3P28288 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
ABCD3P28288 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.27■□□□□ 0.36
ABCD3P28288 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCD3P28288 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
ABCD3P28288 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ABCD3P28288 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCD3P28288 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ABCD3P28288 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms