Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RNU6-854P-201ENST00000364036 107 ntBASIC-4.3□□□□□ -3.1
LIMS3P0CW19 SNORD113-1-201ENST00000365321 69 ntBASIC-4.31□□□□□ -3.1
LIMS3P0CW19 snosnR66.1-201ENST00000391095 99 ntBASIC-4.31□□□□□ -3.1
LIMS3P0CW19 RNU6-820P-201ENST00000384273 107 ntBASIC-4.32□□□□□ -3.1
LIMS3P0CW19 SNORD115-45-201ENST00000391078 81 ntBASIC-4.33□□□□□ -3.1
LIMS3P0CW19 MIR548X-201ENST00000580069 75 ntBASIC-4.33□□□□□ -3.1
LIMS3P0CW19 RNU6-294P-201ENST00000364999 102 ntBASIC-4.34□□□□□ -3.1
LIMS3P0CW19 Y_RNA.382-201ENST00000365672 114 ntBASIC-4.34□□□□□ -3.1
LIMS3P0CW19 RNU6-1161P-201ENST00000516176 102 ntBASIC-4.34□□□□□ -3.1
LIMS3P0CW19 AC139453.2-201ENST00000487255 133 ntBASIC-4.35□□□□□ -3.11
LIMS3P0CW19 MIR656-201ENST00000385224 78 ntBASIC-4.36□□□□□ -3.11
LIMS3P0CW19 Y_RNA.722-201ENST00000517279 114 ntBASIC-4.36□□□□□ -3.11
LIMS3P0CW19 MIR4317-201ENST00000637586 65 ntBASIC-4.37□□□□□ -3.11
LIMS3P0CW19 RNU6-44P-201ENST00000384045 107 ntBASIC-4.4□□□□□ -3.11
LIMS3P0CW19 Y_RNA.694-201ENST00000516677 117 ntBASIC-4.4□□□□□ -3.11
LIMS3P0CW19 Y_RNA.137-201ENST00000363455 112 ntBASIC-4.42□□□□□ -3.12
LIMS3P0CW19 RNA5SP224-201ENST00000365069 126 ntBASIC-4.42□□□□□ -3.12
LIMS3P0CW19 MIR124-1-201ENST00000385275 85 ntBASIC-4.43□□□□□ -3.12
LIMS3P0CW19 AC110620.1-201ENST00000416042 228 ntBASIC-4.43□□□□□ -3.12
LIMS3P0CW19 RNU6-406P-201ENST00000516470 107 ntBASIC-4.45□□□□□ -3.12
LIMS3P0CW19 RNU6-153P-201ENST00000364422 104 ntBASIC-4.47□□□□□ -3.13
LIMS3P0CW19 Y_RNA.260-201ENST00000364628 101 ntBASIC-4.47□□□□□ -3.13
LIMS3P0CW19 AL606753.1-201ENST00000427435 87 ntBASIC-4.47□□□□□ -3.13
LIMS3P0CW19 RNU6-1255P-201ENST00000363434 112 ntBASIC-4.48□□□□□ -3.13
LIMS3P0CW19 RNU6-1340P-201ENST00000384438 107 ntBASIC-4.48□□□□□ -3.13
LIMS3P0CW19 SNORD45C-201ENST00000383893 79 ntBASIC-4.49□□□□□ -3.13
LIMS3P0CW19 MIR3671-201ENST00000580455 88 ntBASIC-4.49□□□□□ -3.13
LIMS3P0CW19 MIR3202-2-201ENST00000635980 79 ntBASIC-4.49□□□□□ -3.13
LIMS3P0CW19 Y_RNA.206-201ENST00000364136 102 ntBASIC-4.5□□□□□ -3.13
LIMS3P0CW19 MT-TR-201ENST00000387439 65 ntBASIC-4.51□□□□□ -3.13
LIMS3P0CW19 MIR548AH-201ENST00000637109 76 ntBASIC-4.51□□□□□ -3.13
LIMS3P0CW19 RNU6-665P-201ENST00000384639 107 ntBASIC-4.57□□□□□ -3.14
LIMS3P0CW19 SNORD115.2-201ENST00000391126 59 ntBASIC-4.57□□□□□ -3.14
LIMS3P0CW19 RNU6-857P-201ENST00000515893 110 ntBASIC-4.57□□□□□ -3.14
LIMS3P0CW19 Y_RNA.369-201ENST00000365568 117 ntBASIC-4.58□□□□□ -3.14
LIMS3P0CW19 RNU6-836P-201ENST00000362920 107 ntBASIC-4.59□□□□□ -3.14
LIMS3P0CW19 Y_RNA.520-201ENST00000384556 102 ntBASIC-4.6□□□□□ -3.15
LIMS3P0CW19 RNU6-1312P-201ENST00000362425 108 ntBASIC-4.62□□□□□ -3.15
LIMS3P0CW19 Y_RNA.81-201ENST00000362997 102 ntBASIC-4.62□□□□□ -3.15
LIMS3P0CW19 MIR5582-201ENST00000579697 68 ntBASIC-4.62□□□□□ -3.15
LIMS3P0CW19 RNU6-279P-201ENST00000391297 101 ntBASIC-4.63□□□□□ -3.15
LIMS3P0CW19 Y_RNA.335-201ENST00000365299 96 ntBASIC-4.65□□□□□ -3.15
LIMS3P0CW19 RNU6-788P-201ENST00000390967 104 ntBASIC-4.66□□□□□ -3.16
LIMS3P0CW19 MIR548AL-201ENST00000578416 97 ntBASIC-4.67□□□□□ -3.16
LIMS3P0CW19 MIR548H4-201ENST00000408689 111 ntBASIC-4.68□□□□□ -3.16
LIMS3P0CW19 MIR1255A-201ENST00000408338 113 ntBASIC-4.69□□□□□ -3.16
LIMS3P0CW19 AC114801.3-201ENST00000510231 177 ntBASIC-4.69□□□□□ -3.16
LIMS3P0CW19 RNU6-776P-201ENST00000364403 104 ntBASIC-4.71□□□□□ -3.16
LIMS3P0CW19 RNU6-1022P-201ENST00000365049 104 ntBASIC-4.71□□□□□ -3.16
LIMS3P0CW19 RNU6-471P-201ENST00000383944 106 ntBASIC-4.71□□□□□ -3.16
LIMS3P0CW19 RNU6-446P-201ENST00000362827 106 ntBASIC-4.72□□□□□ -3.17
LIMS3P0CW19 RNU4-33P-201ENST00000364316 85 ntBASIC-4.73□□□□□ -3.17
LIMS3P0CW19 Y_RNA.565-201ENST00000384719 101 ntBASIC-4.75□□□□□ -3.17
LIMS3P0CW19 RNU6-1326P-201ENST00000391262 107 ntBASIC-4.75□□□□□ -3.17
LIMS3P0CW19 RNU6-1204P-201ENST00000363948 107 ntBASIC-4.77□□□□□ -3.17
LIMS3P0CW19 Y_RNA.386-201ENST00000383913 105 ntBASIC-4.78□□□□□ -3.17
LIMS3P0CW19 RNU6-573P-201ENST00000383938 106 ntBASIC-4.81□□□□□ -3.18
LIMS3P0CW19 RNU6-422P-201ENST00000384632 107 ntBASIC-4.82□□□□□ -3.18
LIMS3P0CW19 MIR545-201ENST00000385085 106 ntBASIC-4.83□□□□□ -3.18
LIMS3P0CW19 Y_RNA.345-201ENST00000365384 92 ntBASIC-4.85□□□□□ -3.19
LIMS3P0CW19 MIR4662A-201ENST00000637499 67 ntBASIC-4.87□□□□□ -3.19
LIMS3P0CW19 SNORD73B-201ENST00000364394 72 ntBASIC-4.88□□□□□ -3.19
LIMS3P0CW19 SNORD113-4-201ENST00000364802 75 ntBASIC-4.89□□□□□ -3.19
LIMS3P0CW19 RNU6-808P-201ENST00000391233 108 ntBASIC-4.89□□□□□ -3.19
LIMS3P0CW19 SNORA26.2-201ENST00000390922 122 ntBASIC-4.91□□□□□ -3.2
LIMS3P0CW19 RNY4P29-201ENST00000410801 97 ntBASIC-4.93□□□□□ -3.2
LIMS3P0CW19 RNU6-1008P-201ENST00000384160 104 ntBASIC-4.94□□□□□ -3.2
LIMS3P0CW19 SNORD78.1-201ENST00000390866 65 ntBASIC-4.94□□□□□ -3.2
LIMS3P0CW19 RNU6-1043P-201ENST00000410355 99 ntBASIC-4.96□□□□□ -3.2
LIMS3P0CW19 RNA5SP225-201ENST00000410874 135 ntBASIC-4.97□□□□□ -3.21
LIMS3P0CW19 AL603908.1-201ENST00000406098 201 ntBASIC-4.98□□□□□ -3.21
LIMS3P0CW19 Y_RNA.388-201ENST00000383919 113 ntBASIC-5.01□□□□□ -3.21
LIMS3P0CW19 RNU6-829P-201ENST00000363700 112 ntBASIC-5.02□□□□□ -3.21
LIMS3P0CW19 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-5.03□□□□□ -3.21
LIMS3P0CW19 RNU6-1128P-201ENST00000362825 109 ntBASIC-5.04□□□□□ -3.22
LIMS3P0CW19 RNU6-838P-201ENST00000363399 108 ntBASIC-5.05□□□□□ -3.22
LIMS3P0CW19 MIR633-201ENST00000384821 98 ntBASIC-5.07□□□□□ -3.22
LIMS3P0CW19 RNA5SP170-201ENST00000517150 101 ntBASIC-5.08□□□□□ -3.22
LIMS3P0CW19 RNU4-85P-201ENST00000364675 123 ntBASIC-5.11□□□□□ -3.23
LIMS3P0CW19 Y_RNA.379-201ENST00000365653 102 ntBASIC-5.12□□□□□ -3.23
LIMS3P0CW19 RNA5SP449-201ENST00000516871 130 ntBASIC-5.15□□□□□ -3.23
LIMS3P0CW19 RNU6-59P-201ENST00000384787 107 ntBASIC-5.18□□□□□ -3.24
LIMS3P0CW19 RNY4P13-201ENST00000384284 96 ntBASIC-5.19□□□□□ -3.24
LIMS3P0CW19 RNU6-1298P-201ENST00000362456 101 ntBASIC-5.2□□□□□ -3.24
LIMS3P0CW19 AC079150.2-201ENST00000443733 78 ntBASIC-5.27□□□□□ -3.25
LIMS3P0CW19 Y_RNA.406-201ENST00000383984 100 ntBASIC-5.28□□□□□ -3.25
LIMS3P0CW19 U2.22-201ENST00000636441 106 ntBASIC-5.28□□□□□ -3.25
LIMS3P0CW19 MIR1302-4-201ENST00000408701 150 ntBASIC-5.3□□□□□ -3.26
LIMS3P0CW19 RNU6-986P-201ENST00000363133 102 ntBASIC-5.33□□□□□ -3.26
LIMS3P0CW19 Y_RNA.685-201ENST00000516532 108 ntBASIC-5.34□□□□□ -3.26
LIMS3P0CW19 Y_RNA.165-201ENST00000363721 102 ntBASIC-5.37□□□□□ -3.27
LIMS3P0CW19 RNU6-753P-201ENST00000363926 107 ntBASIC-5.37□□□□□ -3.27
LIMS3P0CW19 AC125388.1-201ENST00000459631 156 ntBASIC-5.37□□□□□ -3.27
LIMS3P0CW19 RNU6-930P-201ENST00000390938 100 ntBASIC-5.46□□□□□ -3.28
LIMS3P0CW19 RNU6-1024P-201ENST00000384199 107 ntBASIC-5.48□□□□□ -3.29
LIMS3P0CW19 MIR363-201ENST00000384840 75 ntBASIC-5.48□□□□□ -3.29
LIMS3P0CW19 RNU6-936P-201ENST00000384005 107 ntBASIC-5.5□□□□□ -3.29
LIMS3P0CW19 RNU6-499P-201ENST00000365615 107 ntBASIC-5.52□□□□□ -3.29
LIMS3P0CW19 MIR548F3-201ENST00000408509 87 ntBASIC-5.52□□□□□ -3.29
LIMS3P0CW19 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-5.55□□□□□ -3.3
Retrieved 100 of 98,524 protein–RNA pairs in 7.7 ms