Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 MIR1297-201ENST00000637311 77 ntBASIC-2.06□□□□□ -2.74
ZNF404Q494X3 MIR548BB-201ENST00000626714 66 ntBASIC-2.07□□□□□ -2.74
ZNF404Q494X3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-2.07□□□□□ -2.74
ZNF404Q494X3 RNU6-668P-201ENST00000364180 107 ntBASIC-2.08□□□□□ -2.74
ZNF404Q494X3 Y_RNA.261-201ENST00000364631 102 ntBASIC-2.08□□□□□ -2.74
ZNF404Q494X3 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.08□□□□□ -2.74
ZNF404Q494X3 RNU6-129P-201ENST00000391022 107 ntBASIC-2.08□□□□□ -2.74
ZNF404Q494X3 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.08□□□□□ -2.74
ZNF404Q494X3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.08□□□□□ -2.74
ZNF404Q494X3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.08□□□□□ -2.74
ZNF404Q494X3 RNU6-247P-201ENST00000362636 107 ntBASIC-2.09□□□□□ -2.74
ZNF404Q494X3 RNA5SP173-201ENST00000364857 136 ntBASIC-2.09□□□□□ -2.74
ZNF404Q494X3 MIR1207-201ENST00000408249 87 ntBASIC-2.09□□□□□ -2.74
ZNF404Q494X3 RNU6-589P-201ENST00000516485 107 ntBASIC-2.09□□□□□ -2.74
ZNF404Q494X3 RNU6-980P-201ENST00000516925 103 ntBASIC-2.09□□□□□ -2.74
ZNF404Q494X3 MIR8053-201ENST00000613344 75 ntBASIC-2.09□□□□□ -2.74
ZNF404Q494X3 RNU6-258P-201ENST00000390884 101 ntBASIC-2.1□□□□□ -2.75
ZNF404Q494X3 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.1□□□□□ -2.75
ZNF404Q494X3 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.1□□□□□ -2.75
ZNF404Q494X3 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-2.11□□□□□ -2.75
ZNF404Q494X3 RNU6-402P-201ENST00000410678 103 ntBASIC-2.11□□□□□ -2.75
ZNF404Q494X3 AC008267.6-201ENST00000441664 139 ntBASIC-2.11□□□□□ -2.75
ZNF404Q494X3 MIR548AM-201ENST00000584298 74 ntBASIC-2.11□□□□□ -2.75
ZNF404Q494X3 SNORD1B-201ENST00000363091 84 ntBASIC-2.12□□□□□ -2.75
ZNF404Q494X3 SNORD113.1-201ENST00000363280 73 ntBASIC-2.12□□□□□ -2.75
ZNF404Q494X3 SNORA41B-201ENST00000384785 128 ntBASIC-2.12□□□□□ -2.75
ZNF404Q494X3 RNU6-118P-201ENST00000516552 102 ntBASIC-2.12□□□□□ -2.75
ZNF404Q494X3 RNU6-267P-201ENST00000516714 103 ntBASIC-2.12□□□□□ -2.75
ZNF404Q494X3 Y_RNA.219-201ENST00000364232 113 ntBASIC-2.13□□□□□ -2.75
ZNF404Q494X3 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.13□□□□□ -2.75
ZNF404Q494X3 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.13□□□□□ -2.75
ZNF404Q494X3 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.13□□□□□ -2.75
ZNF404Q494X3 RNU6-959P-201ENST00000384671 107 ntBASIC-2.13□□□□□ -2.75
ZNF404Q494X3 RNU6-995P-201ENST00000391244 107 ntBASIC-2.13□□□□□ -2.75
ZNF404Q494X3 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.13□□□□□ -2.75
ZNF404Q494X3 SNORA27.2-201ENST00000363365 126 ntBASIC-2.14□□□□□ -2.75
ZNF404Q494X3 RNY4P18-201ENST00000391107 89 ntBASIC-2.14□□□□□ -2.75
ZNF404Q494X3 RNU6-380P-201ENST00000410207 107 ntBASIC-2.14□□□□□ -2.75
ZNF404Q494X3 MIR4484-201ENST00000582855 83 ntBASIC-2.14□□□□□ -2.75
ZNF404Q494X3 MALAT1.1-201ENST00000618249 95 ntBASIC-2.14□□□□□ -2.75
ZNF404Q494X3 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.14□□□□□ -2.75
ZNF404Q494X3 RNU6-834P-201ENST00000362367 110 ntBASIC-2.15□□□□□ -2.75
ZNF404Q494X3 RNA5SP405-201ENST00000363059 114 ntBASIC-2.15□□□□□ -2.75
ZNF404Q494X3 Y_RNA.611-201ENST00000410682 108 ntBASIC-2.16□□□□□ -2.76
ZNF404Q494X3 Y_RNA.703-201ENST00000516846 111 ntBASIC-2.16□□□□□ -2.76
ZNF404Q494X3 RNU7-151P-201ENST00000516930 53 ntBASIC-2.16□□□□□ -2.76
ZNF404Q494X3 MIR4719-201ENST00000585233 84 ntBASIC-2.16□□□□□ -2.76
ZNF404Q494X3 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.17□□□□□ -2.76
ZNF404Q494X3 RNU6-755P-201ENST00000364400 103 ntBASIC-2.17□□□□□ -2.76
ZNF404Q494X3 RNU6-1056P-201ENST00000383996 107 ntBASIC-2.17□□□□□ -2.76
ZNF404Q494X3 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.17□□□□□ -2.76
ZNF404Q494X3 AL031737.1-201ENST00000450125 223 ntBASIC-2.17□□□□□ -2.76
ZNF404Q494X3 AP001318.4-201ENST00000616637 121 ntBASIC-2.17□□□□□ -2.76
ZNF404Q494X3 SNORA63.4-201ENST00000362763 126 ntBASIC-2.18□□□□□ -2.76
ZNF404Q494X3 Y_RNA.273-201ENST00000364703 102 ntBASIC-2.18□□□□□ -2.76
ZNF404Q494X3 RNU4-88P-201ENST00000411220 86 ntBASIC-2.18□□□□□ -2.76
ZNF404Q494X3 SNORA40.13-201ENST00000516379 120 ntBASIC-2.18□□□□□ -2.76
ZNF404Q494X3 AC099654.10-201ENST00000640395 161 ntBASIC-2.18□□□□□ -2.76
ZNF404Q494X3 RNU6-194P-201ENST00000363862 105 ntBASIC-2.19□□□□□ -2.76
ZNF404Q494X3 SNORD45A-201ENST00000384512 84 ntBASIC-2.19□□□□□ -2.76
ZNF404Q494X3 MIR496-201ENST00000385226 102 ntBASIC-2.19□□□□□ -2.76
ZNF404Q494X3 MIR3133-201ENST00000583157 78 ntBASIC-2.19□□□□□ -2.76
ZNF404Q494X3 AC006160.2-201ENST00000637708 154 ntBASIC-2.19□□□□□ -2.76
ZNF404Q494X3 RNU6-669P-201ENST00000365575 107 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 RNU6-675P-201ENST00000384236 104 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 SNORD63.2-201ENST00000516303 64 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 Y_RNA.709-201ENST00000516952 92 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 AC005520.4-201ENST00000604337 90 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 AL365222.1-201ENST00000614661 98 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 AC013734.1-201ENST00000619329 111 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.2□□□□□ -2.76
ZNF404Q494X3 RNU6-119P-201ENST00000364882 107 ntBASIC-2.21□□□□□ -2.76
ZNF404Q494X3 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.21□□□□□ -2.76
ZNF404Q494X3 MIR7978-201ENST00000636158 59 ntBASIC-2.21□□□□□ -2.76
ZNF404Q494X3 MIR450A1-201ENST00000362262 91 ntBASIC-2.22□□□□□ -2.76
ZNF404Q494X3 MIR125B1-201ENST00000385236 88 ntBASIC-2.22□□□□□ -2.76
ZNF404Q494X3 RNU6-315P-201ENST00000362666 107 ntBASIC-2.23□□□□□ -2.77
ZNF404Q494X3 RNU6-81P-201ENST00000365608 104 ntBASIC-2.23□□□□□ -2.77
ZNF404Q494X3 RNU6-172P-201ENST00000411000 93 ntBASIC-2.23□□□□□ -2.77
ZNF404Q494X3 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.23□□□□□ -2.77
ZNF404Q494X3 RNU6-794P-201ENST00000517261 64 ntBASIC-2.23□□□□□ -2.77
ZNF404Q494X3 MIR3139-201ENST00000579145 76 ntBASIC-2.23□□□□□ -2.77
ZNF404Q494X3 MIR579-201ENST00000385221 98 ntBASIC-2.24□□□□□ -2.77
ZNF404Q494X3 RNU6-523P-201ENST00000516304 54 ntBASIC-2.24□□□□□ -2.77
ZNF404Q494X3 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.25□□□□□ -2.77
ZNF404Q494X3 MIR664A-201ENST00000626086 82 ntBASIC-2.25□□□□□ -2.77
ZNF404Q494X3 Y_RNA.607-201ENST00000410597 98 ntBASIC-2.26□□□□□ -2.77
ZNF404Q494X3 AC090425.1-201ENST00000610007 140 ntBASIC-2.26□□□□□ -2.77
ZNF404Q494X3 U6.97-201ENST00000636904 101 ntBASIC-2.27□□□□□ -2.77
ZNF404Q494X3 RNY3P8-201ENST00000411366 126 ntBASIC-2.28□□□□□ -2.77
ZNF404Q494X3 RNU6-1168P-201ENST00000390831 104 ntBASIC-2.29□□□□□ -2.78
ZNF404Q494X3 RNU6-844P-201ENST00000517175 102 ntBASIC-2.29□□□□□ -2.78
ZNF404Q494X3 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.29□□□□□ -2.78
ZNF404Q494X3 RNU6-1094P-201ENST00000362416 104 ntBASIC-2.3□□□□□ -2.78
ZNF404Q494X3 SNORD18C-201ENST00000362704 69 ntBASIC-2.3□□□□□ -2.78
ZNF404Q494X3 MIR488-201ENST00000365739 83 ntBASIC-2.3□□□□□ -2.78
ZNF404Q494X3 RNU6-1241P-201ENST00000384536 107 ntBASIC-2.3□□□□□ -2.78
ZNF404Q494X3 SNORD116-24-201ENST00000384549 92 ntBASIC-2.3□□□□□ -2.78
ZNF404Q494X3 MT-TM-201ENST00000387377 68 ntBASIC-2.31□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 216.5 ms