Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNU6-624P-201ENST00000363411 107 ntBASIC-1.78□□□□□ -2.69
VCX3AQ9NNX9 RNU6-106P-201ENST00000384405 107 ntBASIC-1.78□□□□□ -2.69
VCX3AQ9NNX9 MIR3675-201ENST00000583661 73 ntBASIC-1.78□□□□□ -2.69
VCX3AQ9NNX9 RNU6-698P-201ENST00000363523 107 ntBASIC-1.79□□□□□ -2.7
VCX3AQ9NNX9 RNU6-598P-201ENST00000364017 105 ntBASIC-1.79□□□□□ -2.7
VCX3AQ9NNX9 RNU6-34P-201ENST00000364874 107 ntBASIC-1.79□□□□□ -2.7
VCX3AQ9NNX9 RNU6-907P-201ENST00000390924 102 ntBASIC-1.79□□□□□ -2.7
VCX3AQ9NNX9 RNU6-303P-201ENST00000517091 106 ntBASIC-1.79□□□□□ -2.7
VCX3AQ9NNX9 RNU6-982P-201ENST00000516216 102 ntBASIC-1.8□□□□□ -2.7
VCX3AQ9NNX9 MIR4668-201ENST00000582284 70 ntBASIC-1.8□□□□□ -2.7
VCX3AQ9NNX9 U4.4-201ENST00000620626 117 ntBASIC-1.8□□□□□ -2.7
VCX3AQ9NNX9 SNORA19-201ENST00000384737 128 ntBASIC-1.81□□□□□ -2.7
VCX3AQ9NNX9 RNU6-158P-201ENST00000517104 100 ntBASIC-1.81□□□□□ -2.7
VCX3AQ9NNX9 MIR23C-201ENST00000579846 100 ntBASIC-1.81□□□□□ -2.7
VCX3AQ9NNX9 RNU6-704P-201ENST00000364162 103 ntBASIC-1.82□□□□□ -2.7
VCX3AQ9NNX9 AC093729.1-201ENST00000513074 128 ntBASIC-1.82□□□□□ -2.7
VCX3AQ9NNX9 RNU6-557P-201ENST00000516842 110 ntBASIC-1.82□□□□□ -2.7
VCX3AQ9NNX9 U2.18-201ENST00000622185 84 ntBASIC-1.82□□□□□ -2.7
VCX3AQ9NNX9 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.82□□□□□ -2.7
VCX3AQ9NNX9 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.83□□□□□ -2.7
VCX3AQ9NNX9 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.83□□□□□ -2.7
VCX3AQ9NNX9 RNU6-766P-201ENST00000362478 107 ntBASIC-1.84□□□□□ -2.7
VCX3AQ9NNX9 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.84□□□□□ -2.7
VCX3AQ9NNX9 AC074348.1-201ENST00000426503 132 ntBASIC-1.84□□□□□ -2.7
VCX3AQ9NNX9 SNORD45.1-201ENST00000363181 77 ntBASIC-1.85□□□□□ -2.71
VCX3AQ9NNX9 RNU6-695P-201ENST00000391157 104 ntBASIC-1.85□□□□□ -2.71
VCX3AQ9NNX9 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.85□□□□□ -2.71
VCX3AQ9NNX9 MIR548V-201ENST00000584165 80 ntBASIC-1.85□□□□□ -2.71
VCX3AQ9NNX9 RNU6-1111P-201ENST00000391118 107 ntBASIC-1.86□□□□□ -2.71
VCX3AQ9NNX9 RNU6-686P-201ENST00000364839 107 ntBASIC-1.87□□□□□ -2.71
VCX3AQ9NNX9 Y_RNA.532-201ENST00000384590 113 ntBASIC-1.87□□□□□ -2.71
VCX3AQ9NNX9 MIR487B-201ENST00000385021 84 ntBASIC-1.87□□□□□ -2.71
VCX3AQ9NNX9 RNA5SP476-201ENST00000516613 103 ntBASIC-1.87□□□□□ -2.71
VCX3AQ9NNX9 MIR3170-201ENST00000582699 77 ntBASIC-1.87□□□□□ -2.71
VCX3AQ9NNX9 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.88□□□□□ -2.71
VCX3AQ9NNX9 RNA5SP266-201ENST00000410273 108 ntBASIC-1.88□□□□□ -2.71
VCX3AQ9NNX9 AC120024.2-201ENST00000576526 175 ntBASIC-1.88□□□□□ -2.71
VCX3AQ9NNX9 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 RNU6-497P-201ENST00000365316 104 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 SNORD116-16-201ENST00000384533 92 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 RNU6-1267P-201ENST00000410747 107 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 MTND4LP1-201ENST00000446263 157 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 RNA5SP461-201ENST00000516451 104 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 MIR2052-201ENST00000636055 55 ntBASIC-1.89□□□□□ -2.71
VCX3AQ9NNX9 MIRLET7A1-201ENST00000362295 80 ntBASIC-1.9□□□□□ -2.71
VCX3AQ9NNX9 SNORD18.1-201ENST00000363807 70 ntBASIC-1.9□□□□□ -2.71
VCX3AQ9NNX9 Y_RNA.261-201ENST00000364631 102 ntBASIC-1.9□□□□□ -2.71
VCX3AQ9NNX9 RNU6-219P-201ENST00000364728 107 ntBASIC-1.9□□□□□ -2.71
VCX3AQ9NNX9 RNU6-563P-201ENST00000364872 108 ntBASIC-1.9□□□□□ -2.71
VCX3AQ9NNX9 MIR630-201ENST00000384957 97 ntBASIC-1.9□□□□□ -2.71
VCX3AQ9NNX9 MIR548AA1-201ENST00000384971 97 ntBASIC-1.9□□□□□ -2.71
VCX3AQ9NNX9 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.91□□□□□ -2.72
VCX3AQ9NNX9 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.91□□□□□ -2.72
VCX3AQ9NNX9 SNORD116-22-201ENST00000384430 92 ntBASIC-1.91□□□□□ -2.72
VCX3AQ9NNX9 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-1.91□□□□□ -2.72
VCX3AQ9NNX9 RNU6-247P-201ENST00000362636 107 ntBASIC-1.92□□□□□ -2.72
VCX3AQ9NNX9 SNORD113-2-201ENST00000391082 72 ntBASIC-1.92□□□□□ -2.72
VCX3AQ9NNX9 MIR548BB-201ENST00000626714 66 ntBASIC-1.92□□□□□ -2.72
VCX3AQ9NNX9 RNA5SP215-201ENST00000363440 122 ntBASIC-1.93□□□□□ -2.72
VCX3AQ9NNX9 RNU6-129P-201ENST00000391022 107 ntBASIC-1.93□□□□□ -2.72
VCX3AQ9NNX9 RNU6-402P-201ENST00000410678 103 ntBASIC-1.93□□□□□ -2.72
VCX3AQ9NNX9 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-1.93□□□□□ -2.72
VCX3AQ9NNX9 RNU6-589P-201ENST00000516485 107 ntBASIC-1.93□□□□□ -2.72
VCX3AQ9NNX9 MIR3123-201ENST00000583417 75 ntBASIC-1.93□□□□□ -2.72
VCX3AQ9NNX9 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.93□□□□□ -2.72
VCX3AQ9NNX9 SNORD1B-201ENST00000363091 84 ntBASIC-1.94□□□□□ -2.72
VCX3AQ9NNX9 RNU6-668P-201ENST00000364180 107 ntBASIC-1.94□□□□□ -2.72
VCX3AQ9NNX9 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.94□□□□□ -2.72
VCX3AQ9NNX9 AC008267.6-201ENST00000441664 139 ntBASIC-1.94□□□□□ -2.72
VCX3AQ9NNX9 RNU6-267P-201ENST00000516714 103 ntBASIC-1.94□□□□□ -2.72
VCX3AQ9NNX9 MIR4484-201ENST00000582855 83 ntBASIC-1.94□□□□□ -2.72
VCX3AQ9NNX9 MIR1297-201ENST00000637311 77 ntBASIC-1.94□□□□□ -2.72
VCX3AQ9NNX9 RNA5SP173-201ENST00000364857 136 ntBASIC-1.95□□□□□ -2.72
VCX3AQ9NNX9 RNU6-841P-201ENST00000383872 107 ntBASIC-1.95□□□□□ -2.72
VCX3AQ9NNX9 RNU6-258P-201ENST00000390884 101 ntBASIC-1.95□□□□□ -2.72
VCX3AQ9NNX9 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.95□□□□□ -2.72
VCX3AQ9NNX9 AC099654.10-201ENST00000640395 161 ntBASIC-1.95□□□□□ -2.72
VCX3AQ9NNX9 Y_RNA.219-201ENST00000364232 113 ntBASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 RNA5SP180-201ENST00000516181 101 ntBASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 Y_RNA.703-201ENST00000516846 111 ntBASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 MIR8053-201ENST00000613344 75 ntBASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 MALAT1.1-201ENST00000618249 95 ntBASIC-1.96□□□□□ -2.72
VCX3AQ9NNX9 RNU6-959P-201ENST00000384671 107 ntBASIC-1.97□□□□□ -2.72
VCX3AQ9NNX9 HAR1A.1-201ENST00000459583 118 ntBASIC-1.97□□□□□ -2.72
VCX3AQ9NNX9 MIR1246-201ENST00000636535 73 ntBASIC-1.97□□□□□ -2.72
VCX3AQ9NNX9 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 SNORD113.1-201ENST00000363280 73 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 RNU6-1081P-201ENST00000384537 107 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 SNORA41B-201ENST00000384785 128 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 Y_RNA.611-201ENST00000410682 108 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 AC108019.1-201ENST00000512540 175 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 MIR4719-201ENST00000585233 84 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.98□□□□□ -2.73
VCX3AQ9NNX9 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.99□□□□□ -2.73
VCX3AQ9NNX9 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.99□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms