Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU2-51P-201ENST00000410708 197 ntBASIC-2.3□□□□□ -2.78
HDDC3Q8N4P3 AC008267.6-201ENST00000441664 139 ntBASIC-2.3□□□□□ -2.78
HDDC3Q8N4P3 RNU6-983P-201ENST00000516004 103 ntBASIC-2.3□□□□□ -2.78
HDDC3Q8N4P3 Y_RNA.703-201ENST00000516846 111 ntBASIC-2.3□□□□□ -2.78
HDDC3Q8N4P3 RNU6-794P-201ENST00000517261 64 ntBASIC-2.3□□□□□ -2.78
HDDC3Q8N4P3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-2.3□□□□□ -2.78
HDDC3Q8N4P3 RNA5SP26-201ENST00000362406 119 ntBASIC-2.31□□□□□ -2.78
HDDC3Q8N4P3 Y_RNA.544-201ENST00000384650 113 ntBASIC-2.31□□□□□ -2.78
HDDC3Q8N4P3 Y_RNA.261-201ENST00000364631 102 ntBASIC-2.32□□□□□ -2.78
HDDC3Q8N4P3 RNU6-246P-201ENST00000384702 107 ntBASIC-2.32□□□□□ -2.78
HDDC3Q8N4P3 MIR548Q-201ENST00000408404 100 ntBASIC-2.32□□□□□ -2.78
HDDC3Q8N4P3 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-2.32□□□□□ -2.78
HDDC3Q8N4P3 MTATP8P2-201ENST00000435212 202 ntBASIC-2.32□□□□□ -2.78
HDDC3Q8N4P3 RNU6-766P-201ENST00000362478 107 ntBASIC-2.33□□□□□ -2.78
HDDC3Q8N4P3 RNU6-704P-201ENST00000364162 103 ntBASIC-2.33□□□□□ -2.78
HDDC3Q8N4P3 Y_RNA.290-201ENST00000364879 114 ntBASIC-2.33□□□□□ -2.78
HDDC3Q8N4P3 MIR548AG1-201ENST00000579932 66 ntBASIC-2.33□□□□□ -2.78
HDDC3Q8N4P3 MIR3133-201ENST00000583157 78 ntBASIC-2.33□□□□□ -2.78
HDDC3Q8N4P3 MIR6129-201ENST00000616087 109 ntBASIC-2.33□□□□□ -2.78
HDDC3Q8N4P3 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.34□□□□□ -2.78
HDDC3Q8N4P3 RNU6-633P-201ENST00000362612 103 ntBASIC-2.35□□□□□ -2.79
HDDC3Q8N4P3 RNU6-164P-201ENST00000364604 103 ntBASIC-2.35□□□□□ -2.79
HDDC3Q8N4P3 MIR2052-201ENST00000636055 55 ntBASIC-2.35□□□□□ -2.79
HDDC3Q8N4P3 RNU6-1174P-201ENST00000517278 101 ntBASIC-2.36□□□□□ -2.79
HDDC3Q8N4P3 MIR4668-201ENST00000582284 70 ntBASIC-2.36□□□□□ -2.79
HDDC3Q8N4P3 Y_RNA.236-201ENST00000364427 111 ntBASIC-2.37□□□□□ -2.79
HDDC3Q8N4P3 RNU6-959P-201ENST00000384671 107 ntBASIC-2.37□□□□□ -2.79
HDDC3Q8N4P3 SNORD19-201ENST00000391191 68 ntBASIC-2.37□□□□□ -2.79
HDDC3Q8N4P3 MIR8485-201ENST00000401372 91 ntBASIC-2.37□□□□□ -2.79
HDDC3Q8N4P3 MIR4770-201ENST00000579149 58 ntBASIC-2.37□□□□□ -2.79
HDDC3Q8N4P3 AL078595.1-201ENST00000404458 226 ntBASIC-2.38□□□□□ -2.79
HDDC3Q8N4P3 AC093729.1-201ENST00000513074 128 ntBASIC-2.38□□□□□ -2.79
HDDC3Q8N4P3 AP002795.1-201ENST00000534879 84 ntBASIC-2.39□□□□□ -2.79
HDDC3Q8N4P3 MIR429-201ENST00000362106 83 ntBASIC-2.4□□□□□ -2.79
HDDC3Q8N4P3 RNU6-209P-201ENST00000384118 107 ntBASIC-2.4□□□□□ -2.79
HDDC3Q8N4P3 snosnR66.1-201ENST00000391095 99 ntBASIC-2.4□□□□□ -2.79
HDDC3Q8N4P3 MIR3675-201ENST00000583661 73 ntBASIC-2.4□□□□□ -2.79
HDDC3Q8N4P3 MIR889-201ENST00000401280 79 ntBASIC-2.41□□□□□ -2.8
HDDC3Q8N4P3 RPL35AP4-201ENST00000412007 102 ntBASIC-2.41□□□□□ -2.8
HDDC3Q8N4P3 RNU6-1056P-201ENST00000383996 107 ntBASIC-2.42□□□□□ -2.8
HDDC3Q8N4P3 RNU6-458P-201ENST00000384179 107 ntBASIC-2.42□□□□□ -2.8
HDDC3Q8N4P3 U6.58-201ENST00000613107 107 ntBASIC-2.42□□□□□ -2.8
HDDC3Q8N4P3 AC091912.2-201ENST00000624798 167 ntBASIC-2.42□□□□□ -2.8
HDDC3Q8N4P3 RNU6-774P-201ENST00000363238 107 ntBASIC-2.43□□□□□ -2.8
HDDC3Q8N4P3 RNU6-624P-201ENST00000363411 107 ntBASIC-2.43□□□□□ -2.8
HDDC3Q8N4P3 SNORD54-201ENST00000459159 67 ntBASIC-2.43□□□□□ -2.8
HDDC3Q8N4P3 RNU6-478P-201ENST00000363904 110 ntBASIC-2.44□□□□□ -2.8
HDDC3Q8N4P3 SNORA8.1-201ENST00000384250 140 ntBASIC-2.44□□□□□ -2.8
HDDC3Q8N4P3 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-2.44□□□□□ -2.8
HDDC3Q8N4P3 RNU6-303P-201ENST00000517091 106 ntBASIC-2.44□□□□□ -2.8
HDDC3Q8N4P3 SNORD116-22-201ENST00000384430 92 ntBASIC-2.45□□□□□ -2.8
HDDC3Q8N4P3 RNU6-589P-201ENST00000516485 107 ntBASIC-2.45□□□□□ -2.8
HDDC3Q8N4P3 MIR4520-1-201ENST00000582609 70 ntBASIC-2.46□□□□□ -2.8
HDDC3Q8N4P3 AL365222.1-201ENST00000614661 98 ntBASIC-2.46□□□□□ -2.8
HDDC3Q8N4P3 MIR6874-201ENST00000635894 71 ntBASIC-2.46□□□□□ -2.8
HDDC3Q8N4P3 RNU6-696P-201ENST00000390834 107 ntBASIC-2.47□□□□□ -2.8
HDDC3Q8N4P3 RNU6-604P-201ENST00000390917 100 ntBASIC-2.47□□□□□ -2.8
HDDC3Q8N4P3 Y_RNA.620-201ENST00000411009 88 ntBASIC-2.47□□□□□ -2.8
HDDC3Q8N4P3 AL031737.1-201ENST00000450125 223 ntBASIC-2.47□□□□□ -2.8
HDDC3Q8N4P3 RNU7-174P-201ENST00000516248 59 ntBASIC-2.47□□□□□ -2.8
HDDC3Q8N4P3 Y_RNA.74-201ENST00000362911 99 ntBASIC-2.48□□□□□ -2.81
HDDC3Q8N4P3 RNU6-1089P-201ENST00000516473 104 ntBASIC-2.48□□□□□ -2.81
HDDC3Q8N4P3 RNU6-557P-201ENST00000516842 110 ntBASIC-2.48□□□□□ -2.81
HDDC3Q8N4P3 RNU6-834P-201ENST00000362367 110 ntBASIC-2.49□□□□□ -2.81
HDDC3Q8N4P3 RNU6-330P-201ENST00000363015 107 ntBASIC-2.49□□□□□ -2.81
HDDC3Q8N4P3 AC090616.4-201ENST00000448026 115 ntBASIC-2.49□□□□□ -2.81
HDDC3Q8N4P3 RNY4-201ENST00000516507 96 ntBASIC-2.49□□□□□ -2.81
HDDC3Q8N4P3 RNU6-686P-201ENST00000364839 107 ntBASIC-2.51□□□□□ -2.81
HDDC3Q8N4P3 RNU6-1325P-201ENST00000364905 105 ntBASIC-2.51□□□□□ -2.81
HDDC3Q8N4P3 RNA5SP93-201ENST00000362525 114 ntBASIC-2.52□□□□□ -2.81
HDDC3Q8N4P3 SNORD45.1-201ENST00000363181 77 ntBASIC-2.52□□□□□ -2.81
HDDC3Q8N4P3 MIR6502-201ENST00000617296 76 ntBASIC-2.52□□□□□ -2.81
HDDC3Q8N4P3 AC018880.2-201ENST00000414265 201 ntBASIC-2.53□□□□□ -2.81
HDDC3Q8N4P3 Y_RNA.603-201ENST00000410571 108 ntBASIC-2.54□□□□□ -2.82
HDDC3Q8N4P3 RNU6-168P-201ENST00000516189 101 ntBASIC-2.54□□□□□ -2.82
HDDC3Q8N4P3 RNU6-118P-201ENST00000516552 102 ntBASIC-2.54□□□□□ -2.82
HDDC3Q8N4P3 MIR450A1-201ENST00000362262 91 ntBASIC-2.55□□□□□ -2.82
HDDC3Q8N4P3 RNU6-982P-201ENST00000516216 102 ntBASIC-2.55□□□□□ -2.82
HDDC3Q8N4P3 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 Y_RNA.282-201ENST00000364793 102 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 Y_RNA.325-201ENST00000365171 122 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 RNU6-402P-201ENST00000410678 103 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 SNORA40.13-201ENST00000516379 120 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 Y_RNA.709-201ENST00000516952 92 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 MIR548BB-201ENST00000626714 66 ntBASIC-2.56□□□□□ -2.82
HDDC3Q8N4P3 Y_RNA.109-201ENST00000363215 102 ntBASIC-2.57□□□□□ -2.82
HDDC3Q8N4P3 RNU6-698P-201ENST00000363523 107 ntBASIC-2.57□□□□□ -2.82
HDDC3Q8N4P3 RNU6-34P-201ENST00000364874 107 ntBASIC-2.57□□□□□ -2.82
HDDC3Q8N4P3 MTND4LP1-201ENST00000446263 157 ntBASIC-2.57□□□□□ -2.82
HDDC3Q8N4P3 RNU6-1262P-201ENST00000516217 96 ntBASIC-2.57□□□□□ -2.82
HDDC3Q8N4P3 MALAT1.1-201ENST00000618249 95 ntBASIC-2.57□□□□□ -2.82
HDDC3Q8N4P3 RNU6-219P-201ENST00000364728 107 ntBASIC-2.58□□□□□ -2.82
HDDC3Q8N4P3 RNU6-81P-201ENST00000365608 104 ntBASIC-2.58□□□□□ -2.82
HDDC3Q8N4P3 RNU6-587P-201ENST00000391282 106 ntBASIC-2.58□□□□□ -2.82
HDDC3Q8N4P3 AC074348.1-201ENST00000426503 132 ntBASIC-2.58□□□□□ -2.82
HDDC3Q8N4P3 RNU6-129P-201ENST00000391022 107 ntBASIC-2.59□□□□□ -2.82
HDDC3Q8N4P3 RNU6-380P-201ENST00000410207 107 ntBASIC-2.59□□□□□ -2.82
HDDC3Q8N4P3 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.6□□□□□ -2.83
HDDC3Q8N4P3 RNU6-630P-201ENST00000391258 106 ntBASIC-2.6□□□□□ -2.83
Retrieved 100 of 98,524 protein–RNA pairs in 238.6 ms