Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL353803.5-201ENST00000599815 141 ntBASIC-0.42□□□□□ -2.48
COL28A1Q2UY09 SNORA62.4-201ENST00000365504 151 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 RNU6-380P-201ENST00000410207 107 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 SNORA13-201ENST00000458790 133 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 RNU6-807P-201ENST00000516805 107 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.43□□□□□ -2.48
COL28A1Q2UY09 MIR518B-201ENST00000385127 83 ntBASIC-0.44□□□□□ -2.48
COL28A1Q2UY09 RNA5SP170-201ENST00000517150 101 ntBASIC-0.44□□□□□ -2.48
COL28A1Q2UY09 MIR4484-201ENST00000582855 83 ntBASIC-0.44□□□□□ -2.48
COL28A1Q2UY09 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.44□□□□□ -2.48
COL28A1Q2UY09 RNU6-645P-201ENST00000364649 106 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 RNU6-1276P-201ENST00000365372 104 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 MIR196A1-201ENST00000388006 70 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 RNU6-721P-201ENST00000410155 105 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 MIR4464-201ENST00000580818 92 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 MIR4320-201ENST00000636981 65 ntBASIC-0.45□□□□□ -2.48
COL28A1Q2UY09 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 SNORD74.6-201ENST00000364796 70 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 RNU6-820P-201ENST00000384273 107 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 RNU6-242P-201ENST00000384359 107 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 MIR587-201ENST00000384845 96 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 AL500527.2-201ENST00000454105 95 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 RNU7-154P-201ENST00000516194 62 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 RNU6-881P-201ENST00000516813 102 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 MIR4712-201ENST00000583750 82 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 MIR1245B-201ENST00000636115 69 ntBASIC-0.46□□□□□ -2.48
COL28A1Q2UY09 SNORD45.1-201ENST00000363181 77 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 SNORD114-25-201ENST00000363742 72 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 RNU6-604P-201ENST00000390917 100 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 AC021146.6-201ENST00000514659 117 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 SNORD22.1-201ENST00000516331 125 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 MIR4666B-201ENST00000578142 81 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 MIR3179-1-201ENST00000578940 84 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 MIR3179-2-201ENST00000579107 84 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 MIR3179-3-201ENST00000579566 84 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 AC062037.1-201ENST00000605302 128 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 MIR3179-4-201ENST00000617599 84 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 U2.7-201ENST00000619197 100 ntBASIC-0.47□□□□□ -2.48
COL28A1Q2UY09 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.48□□□□□ -2.49
COL28A1Q2UY09 MIR519A2-201ENST00000384990 87 ntBASIC-0.48□□□□□ -2.49
COL28A1Q2UY09 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.48□□□□□ -2.49
COL28A1Q2UY09 RNU6-518P-201ENST00000516056 96 ntBASIC-0.48□□□□□ -2.49
COL28A1Q2UY09 AL445584.3-201ENST00000617173 78 ntBASIC-0.48□□□□□ -2.49
COL28A1Q2UY09 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.48□□□□□ -2.49
COL28A1Q2UY09 MIR6888-201ENST00000621977 67 ntBASIC-0.48□□□□□ -2.49
COL28A1Q2UY09 Y_RNA.94-201ENST00000363068 106 ntBASIC-0.49□□□□□ -2.49
COL28A1Q2UY09 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.49□□□□□ -2.49
COL28A1Q2UY09 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.49□□□□□ -2.49
COL28A1Q2UY09 AL021921.1-201ENST00000442774 93 ntBASIC-0.49□□□□□ -2.49
COL28A1Q2UY09 SCARNA17-201ENST00000516183 144 ntBASIC-0.49□□□□□ -2.49
COL28A1Q2UY09 RNU6-787P-201ENST00000384032 107 ntBASIC-0.5□□□□□ -2.49
COL28A1Q2UY09 RNU6-1152P-201ENST00000384576 107 ntBASIC-0.5□□□□□ -2.49
COL28A1Q2UY09 MIR517B-201ENST00000385102 67 ntBASIC-0.5□□□□□ -2.49
COL28A1Q2UY09 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.5□□□□□ -2.49
COL28A1Q2UY09 RNU6-982P-201ENST00000516216 102 ntBASIC-0.5□□□□□ -2.49
COL28A1Q2UY09 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.51□□□□□ -2.49
COL28A1Q2UY09 SNORD115-22-201ENST00000364456 82 ntBASIC-0.51□□□□□ -2.49
COL28A1Q2UY09 MIR124-2-201ENST00000385081 109 ntBASIC-0.51□□□□□ -2.49
COL28A1Q2UY09 SNORD83B-201ENST00000386745 93 ntBASIC-0.51□□□□□ -2.49
COL28A1Q2UY09 SCARNA18B-201ENST00000458806 135 ntBASIC-0.51□□□□□ -2.49
COL28A1Q2UY09 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.51□□□□□ -2.49
COL28A1Q2UY09 MIR664A-201ENST00000626086 82 ntBASIC-0.51□□□□□ -2.49
COL28A1Q2UY09 AP000533.3-201ENST00000447704 118 ntBASIC-0.52□□□□□ -2.49
COL28A1Q2UY09 MIR4324-201ENST00000584846 72 ntBASIC-0.52□□□□□ -2.49
COL28A1Q2UY09 MIR8053-201ENST00000613344 75 ntBASIC-0.52□□□□□ -2.49
COL28A1Q2UY09 uc_338.19-201ENST00000616808 99 ntBASIC-0.52□□□□□ -2.49
COL28A1Q2UY09 RNU6-1255P-201ENST00000363434 112 ntBASIC-0.53□□□□□ -2.49
COL28A1Q2UY09 SNORD73B-201ENST00000364394 72 ntBASIC-0.53□□□□□ -2.49
COL28A1Q2UY09 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.53□□□□□ -2.49
COL28A1Q2UY09 MIR4499-201ENST00000584834 69 ntBASIC-0.53□□□□□ -2.49
COL28A1Q2UY09 Y_RNA.43-201ENST00000362670 111 ntBASIC-0.54□□□□□ -2.5
COL28A1Q2UY09 RNU6-431P-201ENST00000383874 107 ntBASIC-0.54□□□□□ -2.5
COL28A1Q2UY09 SNORD18.2-201ENST00000459604 70 ntBASIC-0.54□□□□□ -2.5
COL28A1Q2UY09 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.54□□□□□ -2.5
COL28A1Q2UY09 SNORD113.1-201ENST00000363280 73 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 SNORD114-3-201ENST00000364969 75 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 MIR548C-201ENST00000384815 97 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 SNORD64-201ENST00000386683 67 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 RNU7-174P-201ENST00000516248 59 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 MIR378F-201ENST00000578143 78 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 MIR6738-201ENST00000619620 64 ntBASIC-0.55□□□□□ -2.5
COL28A1Q2UY09 RNU6-924P-201ENST00000362926 108 ntBASIC-0.56□□□□□ -2.5
COL28A1Q2UY09 SNORD45A-201ENST00000384512 84 ntBASIC-0.56□□□□□ -2.5
COL28A1Q2UY09 MIR548AG1-201ENST00000579932 66 ntBASIC-0.56□□□□□ -2.5
COL28A1Q2UY09 Y_RNA.788-201ENST00000622394 112 ntBASIC-0.56□□□□□ -2.5
COL28A1Q2UY09 RNY4P29-201ENST00000410801 97 ntBASIC-0.57□□□□□ -2.5
COL28A1Q2UY09 MTND4LP1-201ENST00000446263 157 ntBASIC-0.57□□□□□ -2.5
COL28A1Q2UY09 MIR382-201ENST00000637119 76 ntBASIC-0.57□□□□□ -2.5
COL28A1Q2UY09 RNU6-10P-201ENST00000384036 107 ntBASIC-0.58□□□□□ -2.5
COL28A1Q2UY09 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.58□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 204.9 ms