Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNU6-44P-201ENST00000384045 107 ntBASIC-0.71□□□□□ -2.52
CTCFP49711 SNORD83B-201ENST00000386745 93 ntBASIC-0.71□□□□□ -2.52
CTCFP49711 SNORA26.4-201ENST00000391188 123 ntBASIC-0.71□□□□□ -2.52
CTCFP49711 SCARNA17-201ENST00000516183 144 ntBASIC-0.71□□□□□ -2.52
CTCFP49711 MIR548AG1-201ENST00000579932 66 ntBASIC-0.71□□□□□ -2.52
CTCFP49711 RNU6-924P-201ENST00000362926 108 ntBASIC-0.72□□□□□ -2.52
CTCFP49711 SNORD115-37-201ENST00000363768 82 ntBASIC-0.72□□□□□ -2.52
CTCFP49711 RNU6-681P-201ENST00000364012 104 ntBASIC-0.72□□□□□ -2.52
CTCFP49711 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.72□□□□□ -2.52
CTCFP49711 MIR29B1-201ENST00000385015 81 ntBASIC-0.72□□□□□ -2.52
CTCFP49711 RNU6-518P-201ENST00000516056 96 ntBASIC-0.72□□□□□ -2.52
CTCFP49711 SNORD115-33-201ENST00000363723 82 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 SNORD115-22-201ENST00000364456 82 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 RNU6-402P-201ENST00000410678 103 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 Y_RNA.613-201ENST00000410726 97 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 AL021921.1-201ENST00000442774 93 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 SNORD63.1-201ENST00000516178 80 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 AC140658.3-201ENST00000567603 271 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 uc_338.19-201ENST00000616808 99 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 U2.7-201ENST00000619197 100 ntBASIC-0.73□□□□□ -2.53
CTCFP49711 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.74□□□□□ -2.53
CTCFP49711 RNU6-246P-201ENST00000384702 107 ntBASIC-0.74□□□□□ -2.53
CTCFP49711 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.74□□□□□ -2.53
CTCFP49711 AC093729.1-201ENST00000513074 128 ntBASIC-0.74□□□□□ -2.53
CTCFP49711 RNU6-557P-201ENST00000516842 110 ntBASIC-0.74□□□□□ -2.53
CTCFP49711 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.74□□□□□ -2.53
CTCFP49711 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.75□□□□□ -2.53
CTCFP49711 RNU6-267P-201ENST00000516714 103 ntBASIC-0.75□□□□□ -2.53
CTCFP49711 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.76□□□□□ -2.53
CTCFP49711 Y_RNA.532-201ENST00000384590 113 ntBASIC-0.76□□□□□ -2.53
CTCFP49711 AC074348.1-201ENST00000426503 132 ntBASIC-0.76□□□□□ -2.53
CTCFP49711 RNU6-330P-201ENST00000363015 107 ntBASIC-0.77□□□□□ -2.53
CTCFP49711 RNU6-478P-201ENST00000363904 110 ntBASIC-0.77□□□□□ -2.53
CTCFP49711 RNU6-645P-201ENST00000364649 106 ntBASIC-0.77□□□□□ -2.53
CTCFP49711 RNU6-807P-201ENST00000516805 107 ntBASIC-0.77□□□□□ -2.53
CTCFP49711 snoU83B.1-201ENST00000517136 88 ntBASIC-0.77□□□□□ -2.53
CTCFP49711 MIR6818-201ENST00000621576 65 ntBASIC-0.77□□□□□ -2.53
CTCFP49711 RNU6-675P-201ENST00000384236 104 ntBASIC-0.78□□□□□ -2.53
CTCFP49711 RNU7-134P-201ENST00000458997 64 ntBASIC-0.78□□□□□ -2.53
CTCFP49711 RNU6-732P-201ENST00000516033 103 ntBASIC-0.78□□□□□ -2.53
CTCFP49711 RNU7-174P-201ENST00000516248 59 ntBASIC-0.78□□□□□ -2.53
CTCFP49711 RNU6-303P-201ENST00000517091 106 ntBASIC-0.78□□□□□ -2.53
CTCFP49711 MIR548BB-201ENST00000626714 66 ntBASIC-0.78□□□□□ -2.53
CTCFP49711 MIRLET7A1-201ENST00000362295 80 ntBASIC-0.79□□□□□ -2.54
CTCFP49711 RNA5SP26-201ENST00000362406 119 ntBASIC-0.79□□□□□ -2.54
CTCFP49711 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.79□□□□□ -2.54
CTCFP49711 SNORD19-201ENST00000391191 68 ntBASIC-0.79□□□□□ -2.54
CTCFP49711 Y_RNA.684-201ENST00000516510 99 ntBASIC-0.79□□□□□ -2.54
CTCFP49711 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.79□□□□□ -2.54
CTCFP49711 AP002795.1-201ENST00000534879 84 ntBASIC-0.79□□□□□ -2.54
CTCFP49711 U7.5-201ENST00000517224 61 ntBASIC-0.8□□□□□ -2.54
CTCFP49711 RNU6-686P-201ENST00000364839 107 ntBASIC-0.81□□□□□ -2.54
CTCFP49711 AL353691.2-201ENST00000443795 59 ntBASIC-0.81□□□□□ -2.54
CTCFP49711 RNU6-168P-201ENST00000516189 101 ntBASIC-0.81□□□□□ -2.54
CTCFP49711 MIR4306-201ENST00000583390 91 ntBASIC-0.81□□□□□ -2.54
CTCFP49711 MIR3675-201ENST00000583661 73 ntBASIC-0.81□□□□□ -2.54
CTCFP49711 MIR4324-201ENST00000584846 72 ntBASIC-0.81□□□□□ -2.54
CTCFP49711 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.82□□□□□ -2.54
CTCFP49711 SNORA8.1-201ENST00000384250 140 ntBASIC-0.82□□□□□ -2.54
CTCFP49711 RNU6-844P-201ENST00000517175 102 ntBASIC-0.82□□□□□ -2.54
CTCFP49711 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.82□□□□□ -2.54
CTCFP49711 MIR4441-201ENST00000582623 100 ntBASIC-0.82□□□□□ -2.54
CTCFP49711 RNU6-604P-201ENST00000390917 100 ntBASIC-0.83□□□□□ -2.54
CTCFP49711 RNU6-587P-201ENST00000391282 106 ntBASIC-0.83□□□□□ -2.54
CTCFP49711 RNU6-982P-201ENST00000516216 102 ntBASIC-0.83□□□□□ -2.54
CTCFP49711 AC006160.2-201ENST00000637708 154 ntBASIC-0.83□□□□□ -2.54
CTCFP49711 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.84□□□□□ -2.54
CTCFP49711 RNA5SP89-201ENST00000410300 108 ntBASIC-0.84□□□□□ -2.54
CTCFP49711 RNU7-88P-201ENST00000458752 63 ntBASIC-0.84□□□□□ -2.54
CTCFP49711 U4.4-201ENST00000620626 117 ntBASIC-0.84□□□□□ -2.54
CTCFP49711 RNY4P27-201ENST00000363341 96 ntBASIC-0.85□□□□□ -2.55
CTCFP49711 Y_RNA.219-201ENST00000364232 113 ntBASIC-0.85□□□□□ -2.55
CTCFP49711 Y_RNA.282-201ENST00000364793 102 ntBASIC-0.85□□□□□ -2.55
CTCFP49711 RNU6-129P-201ENST00000391022 107 ntBASIC-0.85□□□□□ -2.55
CTCFP49711 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.85□□□□□ -2.55
CTCFP49711 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.86□□□□□ -2.55
CTCFP49711 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.86□□□□□ -2.55
CTCFP49711 RNU6-458P-201ENST00000384179 107 ntBASIC-0.86□□□□□ -2.55
CTCFP49711 RNU6-24P-201ENST00000384440 107 ntBASIC-0.86□□□□□ -2.55
CTCFP49711 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.86□□□□□ -2.55
CTCFP49711 U6.58-201ENST00000613107 107 ntBASIC-0.86□□□□□ -2.55
CTCFP49711 MIR5683-201ENST00000636514 76 ntBASIC-0.86□□□□□ -2.55
CTCFP49711 RNU6-698P-201ENST00000363523 107 ntBASIC-0.87□□□□□ -2.55
CTCFP49711 RNU6-34P-201ENST00000364874 107 ntBASIC-0.87□□□□□ -2.55
CTCFP49711 Y_RNA.593-201ENST00000410292 98 ntBASIC-0.87□□□□□ -2.55
CTCFP49711 RNA5SP461-201ENST00000516451 104 ntBASIC-0.87□□□□□ -2.55
CTCFP49711 MIR1297-201ENST00000637311 77 ntBASIC-0.87□□□□□ -2.55
CTCFP49711 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 SNORD45.1-201ENST00000363181 77 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 MIR507-201ENST00000385234 94 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 MIR527-201ENST00000385244 85 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 RNU6-696P-201ENST00000390834 107 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 MIR1285-2-201ENST00000408311 88 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 Y_RNA.607-201ENST00000410597 98 ntBASIC-0.88□□□□□ -2.55
CTCFP49711 RNU6-315P-201ENST00000362666 107 ntBASIC-0.89□□□□□ -2.55
CTCFP49711 Y_RNA.109-201ENST00000363215 102 ntBASIC-0.89□□□□□ -2.55
CTCFP49711 Y_RNA.228-201ENST00000364346 98 ntBASIC-0.89□□□□□ -2.55
CTCFP49711 RNU6-164P-201ENST00000364604 103 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 213.4 ms