Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.39□□□□□ -2.47
SOX3P41225 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.39□□□□□ -2.47
SOX3P41225 MIR6888-201ENST00000621977 67 ntBASIC-0.39□□□□□ -2.47
SOX3P41225 RNY4P29-201ENST00000410801 97 ntBASIC-0.4□□□□□ -2.47
SOX3P41225 U2.7-201ENST00000619197 100 ntBASIC-0.4□□□□□ -2.47
SOX3P41225 snoR1.1-201ENST00000628177 80 ntBASIC-0.4□□□□□ -2.47
SOX3P41225 RNU6-242P-201ENST00000384359 107 ntBASIC-0.41□□□□□ -2.48
SOX3P41225 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.41□□□□□ -2.48
SOX3P41225 MIR4679-1-201ENST00000637619 75 ntBASIC-0.41□□□□□ -2.48
SOX3P41225 RNA5SP173-201ENST00000364857 136 ntBASIC-0.42□□□□□ -2.48
SOX3P41225 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.42□□□□□ -2.48
SOX3P41225 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-0.42□□□□□ -2.48
SOX3P41225 MIR4436A-201ENST00000585278 85 ntBASIC-0.42□□□□□ -2.48
SOX3P41225 MIR1297-201ENST00000637311 77 ntBASIC-0.42□□□□□ -2.48
SOX3P41225 SNORD95.1-201ENST00000364099 68 ntBASIC-0.43□□□□□ -2.48
SOX3P41225 RNU6-721P-201ENST00000410155 105 ntBASIC-0.43□□□□□ -2.48
SOX3P41225 AL445584.3-201ENST00000617173 78 ntBASIC-0.43□□□□□ -2.48
SOX3P41225 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 SNORD45A-201ENST00000384512 84 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC-0.44□□□□□ -2.48
SOX3P41225 RNU6-284P-201ENST00000411105 106 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 RNU6-518P-201ENST00000516056 96 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 SNORD22.1-201ENST00000516331 125 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 RNA5SP67-201ENST00000516422 131 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 RNU6-807P-201ENST00000516805 107 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 MIR3134-201ENST00000579433 74 ntBASIC-0.44□□□□□ -2.48
SOX3P41225 RNU6-228P-201ENST00000362700 106 ntBASIC-0.46□□□□□ -2.48
SOX3P41225 MIR124-2-201ENST00000385081 109 ntBASIC-0.46□□□□□ -2.48
SOX3P41225 SNORA26.2-201ENST00000390922 122 ntBASIC-0.46□□□□□ -2.48
SOX3P41225 SCARNA17-201ENST00000516183 144 ntBASIC-0.46□□□□□ -2.48
SOX3P41225 RNA5SP470-201ENST00000516463 106 ntBASIC-0.46□□□□□ -2.48
SOX3P41225 SNORD113.1-201ENST00000363280 73 ntBASIC-0.47□□□□□ -2.48
SOX3P41225 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.47□□□□□ -2.48
SOX3P41225 RNU7-154P-201ENST00000516194 62 ntBASIC-0.47□□□□□ -2.48
SOX3P41225 RNU7-174P-201ENST00000516248 59 ntBASIC-0.47□□□□□ -2.48
SOX3P41225 RNU6-1241P-201ENST00000384536 107 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 MIR518B-201ENST00000385127 83 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 MIR204-201ENST00000385200 110 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 MT-TQ-201ENST00000387372 72 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 MIR3179-1-201ENST00000578940 84 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 MIR3179-2-201ENST00000579107 84 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 MIR3179-3-201ENST00000579566 84 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 MIR3179-4-201ENST00000617599 84 ntBASIC-0.48□□□□□ -2.49
SOX3P41225 SNORD115-31-201ENST00000365318 82 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 SNORA62.4-201ENST00000365504 151 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 SNORA3B-201ENST00000391305 131 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 MIR1255A-201ENST00000408338 113 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 RNU6-380P-201ENST00000410207 107 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 RNU6-70P-201ENST00000516438 60 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 RNU6-1089P-201ENST00000516473 104 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-0.49□□□□□ -2.49
SOX3P41225 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.5□□□□□ -2.49
SOX3P41225 RNU6-1124P-201ENST00000384169 107 ntBASIC-0.5□□□□□ -2.49
SOX3P41225 AL021921.1-201ENST00000442774 93 ntBASIC-0.5□□□□□ -2.49
SOX3P41225 SNORD116-24-201ENST00000384549 92 ntBASIC-0.51□□□□□ -2.49
SOX3P41225 RNU6-246P-201ENST00000384702 107 ntBASIC-0.51□□□□□ -2.49
SOX3P41225 MIR548C-201ENST00000384815 97 ntBASIC-0.51□□□□□ -2.49
SOX3P41225 AP000533.3-201ENST00000447704 118 ntBASIC-0.51□□□□□ -2.49
SOX3P41225 RNU6-687P-201ENST00000516443 89 ntBASIC-0.51□□□□□ -2.49
SOX3P41225 MIR548AX-201ENST00000580117 73 ntBASIC-0.51□□□□□ -2.49
SOX3P41225 U4.4-201ENST00000620626 117 ntBASIC-0.51□□□□□ -2.49
SOX3P41225 SNORD114-14-201ENST00000362723 75 ntBASIC-0.52□□□□□ -2.49
SOX3P41225 SNORD74.6-201ENST00000364796 70 ntBASIC-0.52□□□□□ -2.49
SOX3P41225 SNORD57-201ENST00000448188 72 ntBASIC-0.52□□□□□ -2.49
SOX3P41225 Y_RNA.325-201ENST00000365171 122 ntBASIC-0.53□□□□□ -2.49
SOX3P41225 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.53□□□□□ -2.49
SOX3P41225 MIR517B-201ENST00000385102 67 ntBASIC-0.53□□□□□ -2.49
SOX3P41225 RNU6-523P-201ENST00000516304 54 ntBASIC-0.53□□□□□ -2.49
SOX3P41225 MIR8053-201ENST00000613344 75 ntBASIC-0.53□□□□□ -2.49
SOX3P41225 RNU6-587P-201ENST00000391282 106 ntBASIC-0.54□□□□□ -2.5
SOX3P41225 RNA5SP225-201ENST00000410874 135 ntBASIC-0.54□□□□□ -2.5
SOX3P41225 FAS-AS1.1-201ENST00000615327 126 ntBASIC-0.54□□□□□ -2.5
SOX3P41225 MIR3202-2-201ENST00000635980 79 ntBASIC-0.54□□□□□ -2.5
SOX3P41225 SNORA13-201ENST00000458790 133 ntBASIC-0.55□□□□□ -2.5
SOX3P41225 SNORD18.2-201ENST00000459604 70 ntBASIC-0.55□□□□□ -2.5
SOX3P41225 RNU6-857P-201ENST00000515893 110 ntBASIC-0.55□□□□□ -2.5
SOX3P41225 RNU6-1015P-201ENST00000517121 99 ntBASIC-0.55□□□□□ -2.5
SOX3P41225 MIR154-201ENST00000385243 84 ntBASIC-0.56□□□□□ -2.5
SOX3P41225 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.56□□□□□ -2.5
SOX3P41225 RNU6-279P-201ENST00000391297 101 ntBASIC-0.56□□□□□ -2.5
SOX3P41225 MIR1302-4-201ENST00000408701 150 ntBASIC-0.56□□□□□ -2.5
SOX3P41225 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.56□□□□□ -2.5
SOX3P41225 AL627230.5-201ENST00000619807 58 ntBASIC-0.56□□□□□ -2.5
SOX3P41225 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 MIR630-201ENST00000384957 97 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 SNORD78.1-201ENST00000390866 65 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 RNY1P9-201ENST00000532431 109 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 MIR548V-201ENST00000584165 80 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 MIR4324-201ENST00000584846 72 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 MIR6738-201ENST00000619620 64 ntBASIC-0.57□□□□□ -2.5
SOX3P41225 RNU6-668P-201ENST00000364180 107 ntBASIC-0.58□□□□□ -2.5
SOX3P41225 MIR587-201ENST00000384845 96 ntBASIC-0.58□□□□□ -2.5
SOX3P41225 MTND4LP1-201ENST00000446263 157 ntBASIC-0.58□□□□□ -2.5
SOX3P41225 AC021146.6-201ENST00000514659 117 ntBASIC-0.58□□□□□ -2.5
SOX3P41225 MIR4320-201ENST00000636981 65 ntBASIC-0.58□□□□□ -2.5
SOX3P41225 Y_RNA.74-201ENST00000362911 99 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 RNU6-698P-201ENST00000363523 107 ntBASIC-0.59□□□□□ -2.5
SOX3P41225 SNORD114-17-201ENST00000364699 75 ntBASIC-0.59□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 219.6 ms