Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RNU6-604P-201ENST00000390917 100 ntBASIC-2.17□□□□□ -2.76
SDCBPO00560 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-2.17□□□□□ -2.76
SDCBPO00560 RNU6-1267P-201ENST00000410747 107 ntBASIC-2.17□□□□□ -2.76
SDCBPO00560 Y_RNA.107-201ENST00000363190 121 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 RNU6-196P-201ENST00000384315 107 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 Y_RNA.586-201ENST00000391146 98 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 RNU6-327P-201ENST00000516270 127 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 RNU6-109P-201ENST00000516364 107 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 RNU6-659P-201ENST00000516454 104 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 RNU6-184P-201ENST00000516514 107 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 MIR4756-201ENST00000577874 78 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 MIR3675-201ENST00000583661 73 ntBASIC-2.18□□□□□ -2.76
SDCBPO00560 RNU6-841P-201ENST00000383872 107 ntBASIC-2.19□□□□□ -2.76
SDCBPO00560 RNU6-1111P-201ENST00000391118 107 ntBASIC-2.19□□□□□ -2.76
SDCBPO00560 RNU6-388P-201ENST00000517012 105 ntBASIC-2.19□□□□□ -2.76
SDCBPO00560 RNU6-389P-201ENST00000517048 105 ntBASIC-2.19□□□□□ -2.76
SDCBPO00560 MIR548V-201ENST00000584165 80 ntBASIC-2.19□□□□□ -2.76
SDCBPO00560 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-2.19□□□□□ -2.76
SDCBPO00560 RNU6-624P-201ENST00000363411 107 ntBASIC-2.2□□□□□ -2.76
SDCBPO00560 Y_RNA.218-201ENST00000364218 104 ntBASIC-2.2□□□□□ -2.76
SDCBPO00560 AL353621.2-201ENST00000605340 133 ntBASIC-2.2□□□□□ -2.76
SDCBPO00560 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.21□□□□□ -2.76
SDCBPO00560 SNORA8.1-201ENST00000384250 140 ntBASIC-2.21□□□□□ -2.76
SDCBPO00560 SNORD116-21-201ENST00000384507 92 ntBASIC-2.21□□□□□ -2.76
SDCBPO00560 RNU7-200P-201ENST00000516105 62 ntBASIC-2.21□□□□□ -2.76
SDCBPO00560 MIR548AM-201ENST00000584298 74 ntBASIC-2.21□□□□□ -2.76
SDCBPO00560 Y_RNA.413-201ENST00000384007 102 ntBASIC-2.22□□□□□ -2.76
SDCBPO00560 MTATP8P2-201ENST00000435212 202 ntBASIC-2.22□□□□□ -2.76
SDCBPO00560 Y_RNA.754-201ENST00000476024 102 ntBASIC-2.22□□□□□ -2.76
SDCBPO00560 AL117351.2-201ENST00000513571 157 ntBASIC-2.22□□□□□ -2.76
SDCBPO00560 Y_RNA.790-201ENST00000614282 102 ntBASIC-2.22□□□□□ -2.76
SDCBPO00560 Y_RNA.782-201ENST00000614695 102 ntBASIC-2.22□□□□□ -2.76
SDCBPO00560 RNU6-633P-201ENST00000362612 103 ntBASIC-2.23□□□□□ -2.77
SDCBPO00560 Y_RNA.93-201ENST00000363066 109 ntBASIC-2.23□□□□□ -2.77
SDCBPO00560 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.23□□□□□ -2.77
SDCBPO00560 MIR630-201ENST00000384957 97 ntBASIC-2.23□□□□□ -2.77
SDCBPO00560 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-2.23□□□□□ -2.77
SDCBPO00560 SNORD45.1-201ENST00000363181 77 ntBASIC-2.24□□□□□ -2.77
SDCBPO00560 Y_RNA.290-201ENST00000364879 114 ntBASIC-2.24□□□□□ -2.77
SDCBPO00560 Y_RNA.343-201ENST00000365354 112 ntBASIC-2.24□□□□□ -2.77
SDCBPO00560 MIR548AA1-201ENST00000384971 97 ntBASIC-2.24□□□□□ -2.77
SDCBPO00560 SNORD113-2-201ENST00000391082 72 ntBASIC-2.24□□□□□ -2.77
SDCBPO00560 RNU6-303P-201ENST00000517091 106 ntBASIC-2.24□□□□□ -2.77
SDCBPO00560 RNU6-886P-201ENST00000384319 105 ntBASIC-2.25□□□□□ -2.77
SDCBPO00560 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.25□□□□□ -2.77
SDCBPO00560 MIR664B-201ENST00000626756 61 ntBASIC-2.25□□□□□ -2.77
SDCBPO00560 SNORD115-37-201ENST00000363768 82 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 SNORD116-16-201ENST00000384533 92 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 Y_RNA.532-201ENST00000384590 113 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 MIR1302-5-201ENST00000408164 150 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 AC074348.1-201ENST00000426503 132 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 RNU6-346P-201ENST00000516288 111 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 U4.2-201ENST00000618561 85 ntBASIC-2.26□□□□□ -2.77
SDCBPO00560 RNU6-247P-201ENST00000362636 107 ntBASIC-2.27□□□□□ -2.77
SDCBPO00560 Y_RNA.71-201ENST00000362892 104 ntBASIC-2.27□□□□□ -2.77
SDCBPO00560 RNU6-554P-201ENST00000410466 106 ntBASIC-2.27□□□□□ -2.77
SDCBPO00560 MIR4668-201ENST00000582284 70 ntBASIC-2.27□□□□□ -2.77
SDCBPO00560 AC013734.1-201ENST00000619329 111 ntBASIC-2.27□□□□□ -2.77
SDCBPO00560 SNORD1B-201ENST00000363091 84 ntBASIC-2.28□□□□□ -2.77
SDCBPO00560 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.28□□□□□ -2.77
SDCBPO00560 SNORA41B-201ENST00000384785 128 ntBASIC-2.28□□□□□ -2.77
SDCBPO00560 AC093729.1-201ENST00000513074 128 ntBASIC-2.28□□□□□ -2.77
SDCBPO00560 Y_RNA.699-201ENST00000516803 93 ntBASIC-2.28□□□□□ -2.77
SDCBPO00560 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-2.28□□□□□ -2.77
SDCBPO00560 Y_RNA.818-201ENST00000618813 71 ntBASIC-2.28□□□□□ -2.77
SDCBPO00560 MTRNR2L9-201ENST00000622562 75 ntBASIC-2.28□□□□□ -2.77
SDCBPO00560 RNU6-766P-201ENST00000362478 107 ntBASIC-2.29□□□□□ -2.78
SDCBPO00560 RNU6-106P-201ENST00000384405 107 ntBASIC-2.29□□□□□ -2.78
SDCBPO00560 RNU6-1081P-201ENST00000384537 107 ntBASIC-2.29□□□□□ -2.78
SDCBPO00560 SNORA19-201ENST00000384737 128 ntBASIC-2.29□□□□□ -2.78
SDCBPO00560 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.29□□□□□ -2.78
SDCBPO00560 RNU6-557P-201ENST00000516842 110 ntBASIC-2.29□□□□□ -2.78
SDCBPO00560 AC005520.4-201ENST00000604337 90 ntBASIC-2.29□□□□□ -2.78
SDCBPO00560 RNU4-88P-201ENST00000411220 86 ntBASIC-2.3□□□□□ -2.78
SDCBPO00560 RNU6-1045P-201ENST00000516321 107 ntBASIC-2.3□□□□□ -2.78
SDCBPO00560 RNU6-980P-201ENST00000516925 103 ntBASIC-2.3□□□□□ -2.78
SDCBPO00560 RNU6-182P-201ENST00000516970 105 ntBASIC-2.3□□□□□ -2.78
SDCBPO00560 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-2.3□□□□□ -2.78
SDCBPO00560 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.32□□□□□ -2.78
SDCBPO00560 RNU6-463P-201ENST00000384340 107 ntBASIC-2.32□□□□□ -2.78
SDCBPO00560 Y_RNA.506-201ENST00000384494 102 ntBASIC-2.32□□□□□ -2.78
SDCBPO00560 RNU6-686P-201ENST00000364839 107 ntBASIC-2.33□□□□□ -2.78
SDCBPO00560 SNORD114-3-201ENST00000364969 75 ntBASIC-2.33□□□□□ -2.78
SDCBPO00560 Y_RNA.620-201ENST00000411009 88 ntBASIC-2.33□□□□□ -2.78
SDCBPO00560 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.33□□□□□ -2.78
SDCBPO00560 RNA5SP215-201ENST00000363440 122 ntBASIC-2.34□□□□□ -2.78
SDCBPO00560 MTND4LP1-201ENST00000446263 157 ntBASIC-2.34□□□□□ -2.78
SDCBPO00560 RNU7-151P-201ENST00000516930 53 ntBASIC-2.34□□□□□ -2.78
SDCBPO00560 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.34□□□□□ -2.78
SDCBPO00560 MIRLET7A1-201ENST00000362295 80 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 RNU6-497P-201ENST00000365316 104 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 RNU6-669P-201ENST00000365575 107 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 RNU6-907P-201ENST00000390924 102 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 SNORD63.2-201ENST00000516303 64 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 MIR4484-201ENST00000582855 83 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 U6.97-201ENST00000636904 101 ntBASIC-2.35□□□□□ -2.79
SDCBPO00560 SNORA27.2-201ENST00000363365 126 ntBASIC-2.36□□□□□ -2.79
Retrieved 100 of 98,524 protein–RNA pairs in 173 ms