Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.97□□□□□ -2.56
VPS54Q9P1Q0 MTATP8P2-201ENST00000435212 202 ntBASIC-0.97□□□□□ -2.56
VPS54Q9P1Q0 SNORD114-15-201ENST00000364687 72 ntBASIC-0.98□□□□□ -2.57
VPS54Q9P1Q0 SNORD64-201ENST00000386683 67 ntBASIC-0.98□□□□□ -2.57
VPS54Q9P1Q0 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.98□□□□□ -2.57
VPS54Q9P1Q0 RNA5SP25-201ENST00000410815 110 ntBASIC-0.98□□□□□ -2.57
VPS54Q9P1Q0 TMSB4XP3-201ENST00000445144 114 ntBASIC-0.98□□□□□ -2.57
VPS54Q9P1Q0 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.98□□□□□ -2.57
VPS54Q9P1Q0 Y_RNA.698-201ENST00000516798 118 ntBASIC-0.98□□□□□ -2.57
VPS54Q9P1Q0 RNU6-340P-201ENST00000364005 107 ntBASIC-0.99□□□□□ -2.57
VPS54Q9P1Q0 RNA5SP192-201ENST00000364404 120 ntBASIC-0.99□□□□□ -2.57
VPS54Q9P1Q0 MIR521-2-201ENST00000384818 87 ntBASIC-0.99□□□□□ -2.57
VPS54Q9P1Q0 MIR519C-201ENST00000385053 87 ntBASIC-0.99□□□□□ -2.57
VPS54Q9P1Q0 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.99□□□□□ -2.57
VPS54Q9P1Q0 AC140658.3-201ENST00000567603 271 ntBASIC-0.99□□□□□ -2.57
VPS54Q9P1Q0 Y_RNA.244-201ENST00000364484 109 ntBASIC-1□□□□□ -2.57
VPS54Q9P1Q0 Y_RNA.250-201ENST00000364542 110 ntBASIC-1□□□□□ -2.57
VPS54Q9P1Q0 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-1□□□□□ -2.57
VPS54Q9P1Q0 MIR548M-201ENST00000408260 86 ntBASIC-1□□□□□ -2.57
VPS54Q9P1Q0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC-1□□□□□ -2.57
VPS54Q9P1Q0 MIR519A2-201ENST00000384990 87 ntBASIC-1.01□□□□□ -2.57
VPS54Q9P1Q0 MIR382-201ENST00000637119 76 ntBASIC-1.01□□□□□ -2.57
VPS54Q9P1Q0 Y_RNA.544-201ENST00000384650 113 ntBASIC-1.02□□□□□ -2.57
VPS54Q9P1Q0 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.02□□□□□ -2.57
VPS54Q9P1Q0 AL035461.1-201ENST00000421490 332 ntBASIC-1.02□□□□□ -2.57
VPS54Q9P1Q0 RNA5SP67-201ENST00000516422 131 ntBASIC-1.02□□□□□ -2.57
VPS54Q9P1Q0 MIR4668-201ENST00000582284 70 ntBASIC-1.02□□□□□ -2.57
VPS54Q9P1Q0 MIR6739-201ENST00000622461 75 ntBASIC-1.02□□□□□ -2.57
VPS54Q9P1Q0 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.03□□□□□ -2.57
VPS54Q9P1Q0 MIR147A-201ENST00000385079 72 ntBASIC-1.03□□□□□ -2.57
VPS54Q9P1Q0 SNORD77.2-201ENST00000391045 68 ntBASIC-1.03□□□□□ -2.57
VPS54Q9P1Q0 RNU6-633P-201ENST00000362612 103 ntBASIC-1.04□□□□□ -2.58
VPS54Q9P1Q0 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.04□□□□□ -2.58
VPS54Q9P1Q0 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.04□□□□□ -2.58
VPS54Q9P1Q0 AL031737.1-201ENST00000450125 223 ntBASIC-1.04□□□□□ -2.58
VPS54Q9P1Q0 RNU6-518P-201ENST00000516056 96 ntBASIC-1.04□□□□□ -2.58
VPS54Q9P1Q0 RNU6-267P-201ENST00000516714 103 ntBASIC-1.04□□□□□ -2.58
VPS54Q9P1Q0 MIR548AG1-201ENST00000579932 66 ntBASIC-1.04□□□□□ -2.58
VPS54Q9P1Q0 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.05□□□□□ -2.58
VPS54Q9P1Q0 RNY4P18-201ENST00000391107 89 ntBASIC-1.05□□□□□ -2.58
VPS54Q9P1Q0 snoU13.19-201ENST00000459148 104 ntBASIC-1.05□□□□□ -2.58
VPS54Q9P1Q0 RNU6-158P-201ENST00000517104 100 ntBASIC-1.05□□□□□ -2.58
VPS54Q9P1Q0 RNU6-834P-201ENST00000362367 110 ntBASIC-1.06□□□□□ -2.58
VPS54Q9P1Q0 RNU6-313P-201ENST00000516317 112 ntBASIC-1.06□□□□□ -2.58
VPS54Q9P1Q0 RNU6-752P-201ENST00000516376 102 ntBASIC-1.06□□□□□ -2.58
VPS54Q9P1Q0 MIR3165-201ENST00000579874 75 ntBASIC-1.06□□□□□ -2.58
VPS54Q9P1Q0 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.06□□□□□ -2.58
VPS54Q9P1Q0 Y_RNA.620-201ENST00000411009 88 ntBASIC-1.07□□□□□ -2.58
VPS54Q9P1Q0 SNORD57-201ENST00000448188 72 ntBASIC-1.07□□□□□ -2.58
VPS54Q9P1Q0 RNU6-479P-201ENST00000516348 105 ntBASIC-1.07□□□□□ -2.58
VPS54Q9P1Q0 RNA5SP461-201ENST00000516451 104 ntBASIC-1.07□□□□□ -2.58
VPS54Q9P1Q0 RNU6-656P-201ENST00000516785 107 ntBASIC-1.07□□□□□ -2.58
VPS54Q9P1Q0 MIR3910-1-201ENST00000580936 111 ntBASIC-1.07□□□□□ -2.58
VPS54Q9P1Q0 MIR6086-201ENST00000638065 55 ntBASIC-1.07□□□□□ -2.58
VPS54Q9P1Q0 RNU6-330P-201ENST00000363015 107 ntBASIC-1.08□□□□□ -2.58
VPS54Q9P1Q0 RNU6-402P-201ENST00000410678 103 ntBASIC-1.08□□□□□ -2.58
VPS54Q9P1Q0 RNY1P9-201ENST00000532431 109 ntBASIC-1.08□□□□□ -2.58
VPS54Q9P1Q0 AP001318.4-201ENST00000616637 121 ntBASIC-1.08□□□□□ -2.58
VPS54Q9P1Q0 MALAT1.1-201ENST00000618249 95 ntBASIC-1.08□□□□□ -2.58
VPS54Q9P1Q0 MIR4320-201ENST00000636981 65 ntBASIC-1.08□□□□□ -2.58
VPS54Q9P1Q0 RNU6-681P-201ENST00000364012 104 ntBASIC-1.09□□□□□ -2.58
VPS54Q9P1Q0 RNU6-219P-201ENST00000364728 107 ntBASIC-1.09□□□□□ -2.58
VPS54Q9P1Q0 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.09□□□□□ -2.58
VPS54Q9P1Q0 RNU6-706P-201ENST00000517229 104 ntBASIC-1.09□□□□□ -2.58
VPS54Q9P1Q0 SNORD115-37-201ENST00000363768 82 ntBASIC-1.1□□□□□ -2.59
VPS54Q9P1Q0 RNU6-1325P-201ENST00000364905 105 ntBASIC-1.1□□□□□ -2.59
VPS54Q9P1Q0 MIR488-201ENST00000365739 83 ntBASIC-1.1□□□□□ -2.59
VPS54Q9P1Q0 AC093729.1-201ENST00000513074 128 ntBASIC-1.1□□□□□ -2.59
VPS54Q9P1Q0 RNU7-154P-201ENST00000516194 62 ntBASIC-1.1□□□□□ -2.59
VPS54Q9P1Q0 RNU6-924P-201ENST00000362926 108 ntBASIC-1.11□□□□□ -2.59
VPS54Q9P1Q0 RNU6-624P-201ENST00000363411 107 ntBASIC-1.11□□□□□ -2.59
VPS54Q9P1Q0 Y_RNA.178-201ENST00000363832 102 ntBASIC-1.11□□□□□ -2.59
VPS54Q9P1Q0 SNORD63.1-201ENST00000516178 80 ntBASIC-1.11□□□□□ -2.59
VPS54Q9P1Q0 AC132825.6-201ENST00000638861 357 ntBASIC-1.11□□□□□ -2.59
VPS54Q9P1Q0 SNORA63.4-201ENST00000362763 126 ntBASIC-1.12□□□□□ -2.59
VPS54Q9P1Q0 RNU2-51P-201ENST00000410708 197 ntBASIC-1.12□□□□□ -2.59
VPS54Q9P1Q0 RNU7-134P-201ENST00000458997 64 ntBASIC-1.12□□□□□ -2.59
VPS54Q9P1Q0 U2.7-201ENST00000619197 100 ntBASIC-1.12□□□□□ -2.59
VPS54Q9P1Q0 MIR548BB-201ENST00000626714 66 ntBASIC-1.12□□□□□ -2.59
VPS54Q9P1Q0 MIR2052-201ENST00000636055 55 ntBASIC-1.12□□□□□ -2.59
VPS54Q9P1Q0 SNORD115-22-201ENST00000364456 82 ntBASIC-1.13□□□□□ -2.59
VPS54Q9P1Q0 RNU6-497P-201ENST00000365316 104 ntBASIC-1.13□□□□□ -2.59
VPS54Q9P1Q0 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.13□□□□□ -2.59
VPS54Q9P1Q0 SNORD116-22-201ENST00000384430 92 ntBASIC-1.13□□□□□ -2.59
VPS54Q9P1Q0 SNORA40.13-201ENST00000516379 120 ntBASIC-1.13□□□□□ -2.59
VPS54Q9P1Q0 AC138207.3-201ENST00000585289 166 ntBASIC-1.13□□□□□ -2.59
VPS54Q9P1Q0 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.13□□□□□ -2.59
VPS54Q9P1Q0 RNU6-226P-201ENST00000363778 107 ntBASIC-1.14□□□□□ -2.59
VPS54Q9P1Q0 RNU6-645P-201ENST00000364649 106 ntBASIC-1.14□□□□□ -2.59
VPS54Q9P1Q0 Y_RNA.264-201ENST00000364665 102 ntBASIC-1.14□□□□□ -2.59
VPS54Q9P1Q0 MIR8485-201ENST00000401372 91 ntBASIC-1.14□□□□□ -2.59
VPS54Q9P1Q0 AL021921.1-201ENST00000442774 93 ntBASIC-1.14□□□□□ -2.59
VPS54Q9P1Q0 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.14□□□□□ -2.59
VPS54Q9P1Q0 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.15□□□□□ -2.59
VPS54Q9P1Q0 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.15□□□□□ -2.59
VPS54Q9P1Q0 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.15□□□□□ -2.59
VPS54Q9P1Q0 MIR548C-201ENST00000384815 97 ntBASIC-1.15□□□□□ -2.59
VPS54Q9P1Q0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-1.15□□□□□ -2.59
VPS54Q9P1Q0 RNU7-88P-201ENST00000458752 63 ntBASIC-1.15□□□□□ -2.59
VPS54Q9P1Q0 snoU83B.1-201ENST00000517136 88 ntBASIC-1.15□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms