Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR5009-201ENST00000578736 100 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 MIR4777-201ENST00000583710 86 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 AC141273.2-201ENST00000618989 130 ntBASIC-1.9□□□□□ -2.71
SCN3AQ9NY46 RNU6-841P-201ENST00000383872 107 ntBASIC-1.91□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.91□□□□□ -2.71
SCN3AQ9NY46 RNU6-1023P-201ENST00000516137 106 ntBASIC-1.91□□□□□ -2.71
SCN3AQ9NY46 Y_RNA.680-201ENST00000516441 93 ntBASIC-1.91□□□□□ -2.71
SCN3AQ9NY46 RNU6-772P-201ENST00000516042 105 ntBASIC-1.91□□□□□ -2.72
SCN3AQ9NY46 RNU6-1094P-201ENST00000362416 104 ntBASIC-1.92□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.202-201ENST00000364083 110 ntBASIC-1.92□□□□□ -2.72
SCN3AQ9NY46 RNU6-813P-201ENST00000384691 107 ntBASIC-1.92□□□□□ -2.72
SCN3AQ9NY46 RNU7-61P-201ENST00000515897 61 ntBASIC-1.92□□□□□ -2.72
SCN3AQ9NY46 RNU6-518P-201ENST00000516056 96 ntBASIC-1.92□□□□□ -2.72
SCN3AQ9NY46 RNU6-861P-201ENST00000516745 106 ntBASIC-1.92□□□□□ -2.72
SCN3AQ9NY46 RNU6-807P-201ENST00000516805 107 ntBASIC-1.92□□□□□ -2.72
SCN3AQ9NY46 RNU6-1113P-201ENST00000384348 107 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.603-201ENST00000410571 108 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 RNU7-174P-201ENST00000516248 59 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 MIR548F4-201ENST00000408515 105 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.702-201ENST00000516843 96 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 MIR3128-201ENST00000581957 66 ntBASIC-1.93□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.94□□□□□ -2.72
SCN3AQ9NY46 RNU6-194P-201ENST00000363862 105 ntBASIC-1.94□□□□□ -2.72
SCN3AQ9NY46 RNU6-340P-201ENST00000364005 107 ntBASIC-1.94□□□□□ -2.72
SCN3AQ9NY46 RNU6-887P-201ENST00000410660 100 ntBASIC-1.94□□□□□ -2.72
SCN3AQ9NY46 RNU6-537P-201ENST00000517277 103 ntBASIC-1.94□□□□□ -2.72
SCN3AQ9NY46 U6.81-201ENST00000612550 106 ntBASIC-1.94□□□□□ -2.72
SCN3AQ9NY46 RNU6-458P-201ENST00000384179 107 ntBASIC-1.95□□□□□ -2.72
SCN3AQ9NY46 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.95□□□□□ -2.72
SCN3AQ9NY46 U6.58-201ENST00000613107 107 ntBASIC-1.95□□□□□ -2.72
SCN3AQ9NY46 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.95□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 RNU6-478P-201ENST00000363904 110 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 U2.7-201ENST00000619197 100 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 U4.4-201ENST00000620626 117 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 MIR429-201ENST00000362106 83 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 RNU6-1089P-201ENST00000516473 104 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 MIR23C-201ENST00000579846 100 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 MIR548AM-201ENST00000584298 74 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 AC062037.2-201ENST00000610137 73 ntBASIC-1.96□□□□□ -2.72
SCN3AQ9NY46 RNU6-624P-201ENST00000363411 107 ntBASIC-1.98□□□□□ -2.73
SCN3AQ9NY46 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.98□□□□□ -2.73
SCN3AQ9NY46 MIR3675-201ENST00000583661 73 ntBASIC-1.98□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.98□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.98□□□□□ -2.73
SCN3AQ9NY46 MIR606-201ENST00000384851 96 ntBASIC-1.98□□□□□ -2.73
SCN3AQ9NY46 RNU6-682P-201ENST00000363843 106 ntBASIC-1.99□□□□□ -2.73
SCN3AQ9NY46 MIR1236-201ENST00000408340 102 ntBASIC-1.99□□□□□ -2.73
SCN3AQ9NY46 MTCYBP6-201ENST00000441810 138 ntBASIC-1.99□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.668-201ENST00000516233 93 ntBASIC-1.99□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.701-201ENST00000516812 110 ntBASIC-1.99□□□□□ -2.73
SCN3AQ9NY46 MIR548AG1-201ENST00000579932 66 ntBASIC-1.99□□□□□ -2.73
SCN3AQ9NY46 AL035470.1-201ENST00000622571 220 ntBASIC-1.99□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.61-201ENST00000362835 102 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 RNU6-738P-201ENST00000384531 106 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 RNY4-201ENST00000516507 96 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 MIR3123-201ENST00000583417 75 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 AC008737.2-201ENST00000599446 118 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 AC005520.4-201ENST00000604337 90 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 AL353621.2-201ENST00000605340 133 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.103-201ENST00000363171 102 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 RNU6-608P-201ENST00000383927 104 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 MIR519C-201ENST00000385053 87 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 AL117187.1-201ENST00000555482 181 ntBASIC-2□□□□□ -2.73
SCN3AQ9NY46 RNU6-698P-201ENST00000363523 107 ntBASIC-2.01□□□□□ -2.73
SCN3AQ9NY46 SNORD115-37-201ENST00000363768 82 ntBASIC-2.01□□□□□ -2.73
SCN3AQ9NY46 SNORA20.1-201ENST00000364790 130 ntBASIC-2.01□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.282-201ENST00000364793 102 ntBASIC-2.01□□□□□ -2.73
SCN3AQ9NY46 RNU6-34P-201ENST00000364874 107 ntBASIC-2.01□□□□□ -2.73
SCN3AQ9NY46 SNORD90-201ENST00000391145 111 ntBASIC-2.01□□□□□ -2.73
SCN3AQ9NY46 MIR4801-201ENST00000582704 82 ntBASIC-2.01□□□□□ -2.73
SCN3AQ9NY46 SNORD116-18-201ENST00000383961 92 ntBASIC-2.02□□□□□ -2.73
SCN3AQ9NY46 SNORD77.2-201ENST00000391045 68 ntBASIC-2.02□□□□□ -2.73
SCN3AQ9NY46 MTCYBP9-201ENST00000431021 303 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.478-201ENST00000384358 107 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 RNU6-1152P-201ENST00000384576 107 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 RNU6-795P-201ENST00000516323 103 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 RNU6-426P-201ENST00000516464 97 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 RNU6-111P-201ENST00000517179 105 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 MIR3144-201ENST00000579460 79 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 MIR548X2-201ENST00000579776 100 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.781-201ENST00000620301 103 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.03□□□□□ -2.73
SCN3AQ9NY46 Y_RNA.74-201ENST00000362911 99 ntBASIC-2.04□□□□□ -2.74
SCN3AQ9NY46 MIR548AA1-201ENST00000384971 97 ntBASIC-2.04□□□□□ -2.74
SCN3AQ9NY46 Y_RNA.264-201ENST00000364665 102 ntBASIC-2.05□□□□□ -2.74
SCN3AQ9NY46 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.05□□□□□ -2.74
SCN3AQ9NY46 Y_RNA.297-201ENST00000364950 91 ntBASIC-2.06□□□□□ -2.74
SCN3AQ9NY46 SCARNA23-201ENST00000516060 130 ntBASIC-2.06□□□□□ -2.74
SCN3AQ9NY46 MIR466-201ENST00000580653 84 ntBASIC-2.06□□□□□ -2.74
SCN3AQ9NY46 AC044792.1-201ENST00000593294 196 ntBASIC-2.06□□□□□ -2.74
SCN3AQ9NY46 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.07□□□□□ -2.74
SCN3AQ9NY46 Y_RNA.422-201ENST00000384054 114 ntBASIC-2.07□□□□□ -2.74
SCN3AQ9NY46 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.07□□□□□ -2.74
SCN3AQ9NY46 RNU6-258P-201ENST00000390884 101 ntBASIC-2.07□□□□□ -2.74
SCN3AQ9NY46 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-2.07□□□□□ -2.74
Retrieved 100 of 98,524 protein–RNA pairs in 277.6 ms